Wall clock time and date at job start Mon Mar 30 2020 00:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99921 * 2 1 4 4 C 1.53001 * 112.85126 * 63.56610 * 3 2 1 5 5 C 1.52998 * 109.47181 * 54.01581 * 4 3 2 6 6 N 1.46896 * 109.47341 * 174.87850 * 5 4 3 7 7 C 1.46898 * 111.00062 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.47388 * 180.02562 * 7 6 5 9 9 H 1.08998 * 109.47160 * 305.00590 * 8 7 6 10 10 C 1.47207 * 109.46856 * 65.00128 * 8 7 6 11 11 N 7.23094 * 74.22951 * 66.82001 * 2 1 3 12 12 C 1.53002 * 109.47270 * 185.00130 * 8 7 6 13 13 C 1.50698 * 109.46721 * 175.00133 * 12 8 7 14 14 H 1.07995 * 120.00421 * 0.02562 * 13 12 8 15 15 C 1.37876 * 119.99661 * 179.97438 * 13 12 8 16 16 N 1.31514 * 120.00202 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00205 * 0.02562 * 15 13 12 18 18 H 1.48495 * 109.47411 * 89.99643 * 17 15 13 19 19 H 1.48497 * 109.47367 * 209.99860 * 17 15 13 20 20 H 1.48508 * 109.47073 * 330.00007 * 17 15 13 21 21 C 1.53774 * 113.69521 * 194.83742 * 3 2 1 22 22 C 1.53783 * 87.08408 * 89.12405 * 21 3 2 23 23 C 1.53783 * 87.07831 * 25.43531 * 22 21 3 24 24 H 1.09000 * 109.46900 * 295.23176 * 1 2 3 25 25 H 1.08990 * 109.47364 * 55.23877 * 1 2 3 26 26 H 1.09003 * 109.46765 * 175.23792 * 1 2 3 27 27 H 1.09005 * 109.47185 * 294.02081 * 4 3 2 28 28 H 1.08998 * 109.47433 * 174.01696 * 4 3 2 29 29 H 1.09003 * 109.46761 * 54.88307 * 5 4 3 30 30 H 1.08999 * 109.47283 * 294.88166 * 5 4 3 31 31 H 1.00900 * 110.99559 * 56.05118 * 6 5 4 32 32 H 1.09003 * 109.47369 * 60.00134 * 7 6 5 33 33 H 1.08999 * 109.47412 * 300.00095 * 7 6 5 34 34 H 1.08998 * 109.47014 * 55.00214 * 12 8 7 35 35 H 1.08998 * 109.46712 * 295.00034 * 12 8 7 36 36 H 0.97001 * 120.00704 * 180.02562 * 16 15 13 37 37 H 1.09005 * 113.61828 * 203.67514 * 21 3 2 38 38 H 1.09005 * 113.61314 * 334.58006 * 21 3 2 39 39 H 1.09000 * 113.61272 * 270.89158 * 22 21 3 40 40 H 1.08994 * 113.69130 * 139.98913 * 22 21 3 41 41 H 1.09001 * 113.61369 * 220.02148 * 23 22 21 42 42 H 1.09003 * 113.61643 * 89.11329 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6785 2.1035 1.2625 5 6 2.0712 1.2906 2.4977 6 7 1.8672 2.1034 3.7041 7 6 2.2354 1.3536 4.9125 8 6 2.0093 2.2307 6.1457 9 1 2.5563 3.1665 6.0312 10 6 0.5723 2.5166 6.2876 11 7 -0.5362 2.7391 6.3970 12 6 2.5088 1.4970 7.3919 13 6 2.3996 2.4071 8.5881 14 1 2.0123 3.4084 8.4713 15 6 2.7932 1.9610 9.8319 16 7 2.6975 2.7550 10.8759 17 14 3.4626 0.2288 10.0342 18 1 4.9356 0.2423 9.8472 19 1 3.1410 -0.2703 11.3953 20 1 2.8432 -0.6627 9.0208 21 6 3.5051 1.3164 -0.3606 22 6 3.0693 1.4524 -1.8291 23 6 1.7708 2.0864 -1.3030 24 1 -0.3633 0.4381 0.9296 25 1 -0.3633 0.5859 -0.8442 26 1 -0.3633 -1.0242 -0.0853 27 1 0.6090 2.3122 1.2900 28 1 2.2318 3.0426 1.2547 29 1 3.1205 1.0043 2.4256 30 1 1.4532 0.3945 2.5545 31 1 0.9160 2.4352 3.7599 32 1 3.2859 1.0681 4.8570 33 1 1.6189 0.4578 4.9863 34 1 3.5499 1.2070 7.2499 35 1 1.9026 0.6063 7.5565 36 1 2.9747 2.4414 11.7510 37 1 4.0395 2.1874 0.0188 38 1 4.0140 0.3777 -0.1414 39 1 2.9168 0.4962 -2.3296 40 1 3.6873 2.1392 -2.4074 41 1 0.8795 1.7693 -1.8445 42 1 1.8310 3.1679 -1.1812 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000515055034.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:24 Heat of formation + Delta-G solvation = -32.148176 kcal Electronic energy + Delta-G solvation = -19899.966127 eV Core-core repulsion = 16879.587060 eV Total energy + Delta-G solvation = -3020.379067 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.98799 -38.94182 -36.73329 -36.49508 -35.46749 -33.86488 -31.41468 -28.57136 -27.96125 -26.46277 -25.17867 -23.65738 -23.33698 -22.24960 -20.33782 -18.94816 -18.32583 -17.34722 -16.94878 -16.71974 -16.31324 -16.16360 -15.65946 -15.26814 -15.11377 -14.82462 -14.63616 -14.39009 -14.06675 -14.01258 -13.67910 -13.22357 -13.19193 -13.03486 -12.80016 -12.57653 -12.46568 -12.17879 -12.07156 -11.99463 -11.84682 -11.66808 -11.66325 -11.48988 -11.29111 -10.93617 -10.73263 -10.27659 -9.40660 -8.25089 -6.30815 1.42743 1.45269 1.55560 1.91325 1.92736 2.40844 2.73030 3.10453 3.12377 3.21384 3.58374 3.70980 3.93794 4.01760 4.07486 4.29989 4.33574 4.40849 4.44167 4.51385 4.54834 4.61135 4.74700 4.79598 4.85631 4.86711 4.90273 4.94325 5.01798 5.08708 5.17389 5.19753 5.23670 5.35675 5.43385 5.45705 5.62921 6.03135 6.25664 6.31526 6.34453 6.72298 6.79123 7.33746 8.91904 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.030939 B = 0.003327 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.787425 B = 8413.781862 C = 8674.810516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.379 6.379 3 C 0.085 3.915 4 C -0.126 4.126 5 C 0.069 3.931 6 N -0.693 5.693 7 C 0.076 3.924 8 C 0.024 3.976 9 H 0.121 0.879 10 C 0.249 3.751 11 N -0.506 5.506 12 C -0.003 4.003 13 C -0.532 4.532 14 H 0.029 0.971 15 C 0.003 3.997 16 N -0.954 5.954 17 Si 0.949 3.051 18 H -0.256 1.256 19 H -0.295 1.295 20 H -0.239 1.239 21 C -0.124 4.124 22 C -0.133 4.133 23 C -0.162 4.162 24 H 0.037 0.963 25 H 0.052 0.948 26 H 0.093 0.907 27 H 0.058 0.942 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.023 0.977 31 H 0.333 0.667 32 H 0.113 0.887 33 H 0.036 0.964 34 H 0.064 0.936 35 H 0.025 0.975 36 H 0.265 0.735 37 H 0.106 0.894 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.369 -6.243 -27.390 28.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.299 6.299 3 C 0.045 3.955 4 C -0.164 4.164 5 C -0.060 4.060 6 N -0.324 5.324 7 C -0.055 4.055 8 C 0.002 3.998 9 H 0.139 0.861 10 C -0.067 4.067 11 N -0.183 5.183 12 C -0.042 4.042 13 C -0.570 4.570 14 H 0.047 0.953 15 C -0.194 4.194 16 N -0.595 5.595 17 Si 0.772 3.228 18 H -0.180 1.180 19 H -0.222 1.222 20 H -0.162 1.162 21 C -0.161 4.161 22 C -0.170 4.170 23 C -0.199 4.199 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.112 0.888 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.042 0.958 31 H 0.149 0.851 32 H 0.131 0.869 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.125 0.875 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.445 -5.754 -27.116 27.757 hybrid contribution -0.714 -0.717 1.069 1.472 sum 0.731 -6.470 -26.047 26.848 Atomic orbital electron populations 1.22820 0.80545 1.03336 1.00377 1.87876 1.20443 1.26685 1.94857 1.22670 0.95943 0.83476 0.93404 1.21962 1.01667 0.99592 0.93195 1.21806 1.01743 0.93886 0.88534 1.60587 1.29658 1.40061 1.02063 1.21992 1.03419 0.93463 0.86578 1.19120 0.81460 1.02531 0.96714 0.86127 1.29719 0.95457 0.91168 0.90394 1.81037 1.14823 1.11153 1.11314 1.19582 0.98573 0.95345 0.90659 1.21404 1.42308 1.00052 0.93208 0.95256 1.26046 0.95640 1.02334 0.95379 1.70087 1.49924 1.39008 1.00486 0.85675 0.79959 0.79402 0.77758 1.18032 1.22155 1.16201 1.23056 0.93295 1.03330 0.96422 1.22742 0.96922 1.01152 0.96203 1.23541 0.99026 1.00871 0.96466 0.94462 0.92921 0.88808 0.92356 0.89148 0.90096 0.95833 0.85055 0.86866 0.94535 0.91828 0.95624 0.92626 0.87534 0.91172 0.90532 0.90047 0.91165 0.88238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.54 113.37 1.20 1.58 16 2 O -0.38 -7.28 9.98 -148.98 -1.49 -8.77 16 3 C 0.09 1.36 0.72 -10.27 -0.01 1.36 16 4 C -0.13 -2.16 4.49 30.59 0.14 -2.02 16 5 C 0.07 1.39 5.41 86.30 0.47 1.86 16 6 N -0.69 -16.37 6.50 -513.89 -3.34 -19.71 16 7 C 0.08 1.93 5.12 86.31 0.44 2.38 16 8 C 0.02 0.80 2.42 -12.59 -0.03 0.77 16 9 H 0.12 4.03 8.14 -2.39 -0.02 4.01 16 10 C 0.25 9.91 12.98 89.45 1.16 11.07 16 11 N -0.51 -22.25 18.54 20.01 0.37 -21.88 16 12 C 0.00 -0.10 3.49 29.85 0.10 0.00 16 13 C -0.53 -28.95 9.15 25.60 0.23 -28.72 16 14 H 0.03 1.80 7.84 -2.91 -0.02 1.78 16 15 C 0.00 0.15 5.47 84.65 0.46 0.61 16 16 N -0.95 -59.42 13.96 21.45 0.30 -59.12 16 17 Si 0.95 41.78 27.47 68.60 1.88 43.66 16 18 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 19 H -0.30 -13.28 7.11 99.48 0.71 -12.58 16 20 H -0.24 -9.46 6.54 99.48 0.65 -8.80 16 21 C -0.12 -1.74 7.23 31.12 0.22 -1.51 16 22 C -0.13 -1.66 8.02 31.12 0.25 -1.41 16 23 C -0.16 -2.10 7.19 31.12 0.22 -1.88 16 24 H 0.04 0.61 7.17 -2.39 -0.02 0.59 16 25 H 0.05 0.68 6.70 -2.39 -0.02 0.67 16 26 H 0.09 1.22 8.14 -2.39 -0.02 1.21 16 27 H 0.06 1.03 7.35 -2.38 -0.02 1.01 16 28 H 0.09 1.48 8.05 -2.39 -0.02 1.46 16 29 H 0.08 1.56 7.94 -2.39 -0.02 1.55 16 30 H 0.02 0.52 7.88 -2.39 -0.02 0.50 16 31 H 0.33 8.44 7.81 -89.69 -0.70 7.74 16 32 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 2.30 7.57 -2.39 -0.02 2.28 16 35 H 0.03 1.05 7.20 -2.39 -0.02 1.03 16 36 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 37 H 0.11 1.28 8.04 -2.38 -0.02 1.26 16 38 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.07 0.91 6.83 -2.39 -0.02 0.89 16 42 H 0.10 1.11 8.10 -2.39 -0.02 1.09 16 Total: -1.00 -67.77 343.19 2.83 -64.94 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.24 Total: 16.80 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: 4.86 Total: -15.91 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -2.67 Total: -100.72 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -1.49 Total: -8.77 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.88 Total: 43.66 kcal Total: -67.77 2.83 -64.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515055034.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.794 kcal (2) G-P(sol) polarization free energy of solvation -67.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds