Wall clock time and date at job start Mon Mar 30 2020 00:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47425 * 2 1 4 4 H 1.09002 * 109.47211 * 177.95328 * 3 2 1 5 5 C 1.50706 * 109.46695 * 57.95419 * 3 2 1 6 6 H 1.07997 * 120.00031 * 239.99216 * 5 3 2 7 7 C 1.37877 * 119.99848 * 60.00467 * 5 3 2 8 8 N 1.31516 * 120.00218 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99782 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46623 * 89.99983 * 9 7 5 11 11 H 1.48496 * 109.47155 * 209.99254 * 9 7 5 12 12 H 1.48497 * 109.47384 * 330.00013 * 9 7 5 13 13 N 1.46898 * 109.47205 * 297.95507 * 3 2 1 14 14 C 1.46899 * 111.00146 * 273.81477 * 13 3 2 15 15 C 1.50697 * 109.47199 * 174.49902 * 14 13 3 16 16 N 1.30832 * 125.96248 * 270.17619 * 15 14 13 17 17 C 1.33243 * 109.82727 * 180.23929 * 16 15 14 18 18 N 1.30706 * 108.94727 * 359.75547 * 17 16 15 19 19 N 1.34428 * 125.96089 * 90.00067 * 15 14 13 20 20 C 1.46506 * 126.82444 * 0.03841 * 19 15 14 21 21 C 1.53001 * 109.46962 * 269.71238 * 20 19 15 22 22 C 1.53003 * 109.46755 * 294.99494 * 21 20 19 23 23 C 1.53002 * 109.46675 * 174.99769 * 21 20 19 24 24 H 1.08998 * 109.46942 * 54.45749 * 1 2 3 25 25 H 1.09000 * 109.47376 * 174.45908 * 1 2 3 26 26 H 1.08997 * 109.47224 * 294.46371 * 1 2 3 27 27 H 1.09004 * 109.46587 * 239.99643 * 2 1 3 28 28 H 1.09000 * 109.46711 * 120.00274 * 2 1 3 29 29 H 0.96996 * 119.99650 * 180.02562 * 8 7 5 30 30 H 1.00904 * 110.99767 * 149.86035 * 13 3 2 31 31 H 1.09003 * 109.46853 * 54.50001 * 14 13 3 32 32 H 1.08998 * 109.46897 * 294.50020 * 14 13 3 33 33 H 1.08004 * 125.52293 * 179.72864 * 17 16 15 34 34 H 1.08998 * 109.46815 * 149.70873 * 20 19 15 35 35 H 1.08999 * 109.46284 * 29.70699 * 20 19 15 36 36 H 1.09001 * 109.47426 * 54.99999 * 21 20 19 37 37 H 1.09007 * 109.46637 * 180.02562 * 22 21 20 38 38 H 1.08991 * 109.47444 * 299.99840 * 22 21 20 39 39 H 1.08990 * 109.47002 * 60.00606 * 22 21 20 40 40 H 1.09000 * 109.46650 * 179.97438 * 23 21 20 41 41 H 1.08998 * 109.47201 * 299.99966 * 23 21 20 42 42 H 1.09001 * 109.47006 * 59.99973 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1295 1.4426 0.0367 5 6 1.4967 2.1673 1.2044 6 1 0.8798 3.0441 1.0741 7 6 1.7874 1.7112 2.4726 8 7 2.5385 0.6433 2.6314 9 14 1.1145 2.6101 3.9655 10 1 -0.2068 2.0401 4.3324 11 1 2.0549 2.4522 5.1039 12 1 0.9603 4.0523 3.6471 13 7 1.5912 2.1205 -1.2234 14 6 2.5278 1.8843 -2.3301 15 6 1.9688 2.4790 -3.5969 16 7 1.1953 1.8674 -4.4567 17 6 0.8955 2.6908 -5.4605 18 7 1.4724 3.8446 -5.2496 19 7 2.1752 3.7317 -4.0389 20 6 2.9787 4.7706 -3.3899 21 6 2.0928 5.5844 -2.4446 22 6 1.0372 6.3375 -3.2568 23 6 2.9547 6.5869 -1.6745 24 1 -0.3633 0.5974 -0.8362 25 1 -0.3634 -1.0228 -0.0992 26 1 -0.3633 0.4256 0.9354 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.7427 0.3223 3.5236 30 1 1.4629 3.1084 -1.0629 31 1 2.6691 0.8117 -2.4638 32 1 3.4858 2.3512 -2.1014 33 1 0.2766 2.4446 -6.3106 34 1 3.4021 5.4292 -4.1483 35 1 3.7843 4.3050 -2.8222 36 1 1.5996 4.9136 -1.7411 37 1 0.4063 6.9177 -2.5834 38 1 1.5304 7.0084 -3.9602 39 1 0.4233 5.6233 -3.8054 40 1 2.3235 7.1670 -1.0014 41 1 3.7067 6.0504 -1.0959 42 1 3.4479 7.2578 -2.3780 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517391891.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:36 Heat of formation + Delta-G solvation = 72.890868 kcal Electronic energy + Delta-G solvation = -21169.741098 eV Core-core repulsion = 18186.209617 eV Total energy + Delta-G solvation = -2983.531481 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.86613 -36.84745 -36.34138 -33.21763 -32.36996 -31.30897 -30.09166 -27.22793 -27.15404 -26.39173 -24.52507 -23.15730 -21.78811 -20.97809 -19.69742 -19.01047 -17.02850 -16.39071 -15.73124 -15.44452 -15.00743 -14.40113 -14.20475 -13.90236 -13.62324 -13.34948 -13.26390 -12.81923 -12.56826 -12.31768 -12.07540 -11.86790 -11.81890 -11.48055 -11.19656 -11.06017 -10.97116 -10.82185 -10.79660 -10.42939 -10.16813 -9.82547 -9.67964 -9.44379 -9.40067 -9.24294 -8.83890 -8.54006 -7.43200 -6.08449 -4.14340 1.83925 2.48530 3.23318 3.25490 3.32798 3.34698 4.32300 4.41021 4.50679 4.64572 4.86061 4.99374 5.07350 5.22244 5.28957 5.30693 5.41956 5.57528 5.61022 5.76727 5.82245 5.92111 6.00313 6.05441 6.19555 6.25926 6.52167 6.55321 6.70414 6.72645 6.85294 7.02823 7.19068 7.27186 7.44849 7.68115 7.73128 7.78497 8.14072 8.26275 8.40881 8.51032 8.92144 9.50629 10.97442 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.018305 B = 0.006165 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.253388 B = 4540.578341 C = 5570.748547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.219 3.781 4 H 0.004 0.996 5 C -0.515 4.515 6 H 0.058 0.942 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.893 3.107 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.672 5.672 14 C 0.134 3.866 15 C 0.300 3.700 16 N -0.533 5.533 17 C 0.191 3.809 18 N -0.330 5.330 19 N -0.375 5.375 20 C 0.131 3.869 21 C -0.114 4.114 22 C -0.142 4.142 23 C -0.144 4.144 24 H 0.048 0.952 25 H 0.013 0.987 26 H 0.050 0.950 27 H 0.013 0.987 28 H 0.086 0.914 29 H 0.262 0.738 30 H 0.329 0.671 31 H 0.102 0.898 32 H 0.041 0.959 33 H 0.211 0.789 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.739 8.066 -10.202 13.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.112 3.888 4 H 0.022 0.978 5 C -0.553 4.553 6 H 0.077 0.923 7 C -0.136 4.136 8 N -0.525 5.525 9 Si 0.721 3.279 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.306 5.306 14 C 0.002 3.998 15 C 0.023 3.977 16 N -0.260 5.260 17 C -0.112 4.112 18 N -0.158 5.158 19 N -0.165 5.165 20 C 0.009 3.991 21 C -0.134 4.134 22 C -0.199 4.199 23 C -0.201 4.201 24 H 0.067 0.933 25 H 0.033 0.967 26 H 0.069 0.931 27 H 0.032 0.968 28 H 0.105 0.895 29 H 0.071 0.929 30 H 0.148 0.852 31 H 0.120 0.880 32 H 0.059 0.941 33 H 0.228 0.772 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.279 7.773 -10.661 13.256 hybrid contribution 0.402 1.006 1.208 1.622 sum 1.681 8.779 -9.453 13.010 Atomic orbital electron populations 1.21429 0.97371 0.97345 1.01508 1.21433 0.95305 0.97821 0.99520 1.19179 0.93457 0.91847 0.84309 0.97818 1.21108 1.31938 1.12100 0.90186 0.92346 1.24849 0.94960 0.94978 0.98790 1.69881 1.37122 1.22941 1.22517 0.86585 0.78890 0.80040 0.82426 1.20575 1.21284 1.20002 1.60694 1.46701 1.16223 1.06939 1.20450 0.92995 1.01317 0.85067 1.24579 0.93786 0.82521 0.96780 1.70520 1.17716 1.33571 1.04240 1.25890 0.99327 0.87411 0.98603 1.77929 1.14579 1.23242 1.00013 1.50381 1.38268 1.10952 1.16914 1.21931 0.92470 0.88815 0.95883 1.21569 0.96893 0.97776 0.97154 1.21781 0.98493 1.00110 0.99550 1.21760 0.99871 0.98602 0.99915 0.93312 0.96748 0.93095 0.96820 0.89539 0.92851 0.85246 0.87990 0.94099 0.77238 0.88794 0.88594 0.89770 0.92590 0.92807 0.92202 0.91734 0.91923 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.69 9.46 37.16 0.35 -2.34 16 2 C -0.10 -2.41 5.57 -26.73 -0.15 -2.56 16 3 C 0.22 5.11 2.30 -68.87 -0.16 4.95 16 4 H 0.00 0.11 7.84 -51.93 -0.41 -0.30 16 5 C -0.51 -13.09 7.33 -34.44 -0.25 -13.34 16 6 H 0.06 1.49 7.60 -52.49 -0.40 1.09 16 7 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -24.03 11.34 55.43 0.63 -23.40 16 9 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 N -0.67 -13.41 5.49 -109.22 -0.60 -14.01 16 14 C 0.13 2.31 5.78 -4.98 -0.03 2.28 16 15 C 0.30 5.05 7.54 -155.70 -1.17 3.88 16 16 N -0.53 -9.43 11.19 -11.97 -0.13 -9.56 16 17 C 0.19 2.87 13.03 -91.82 -1.20 1.68 16 18 N -0.33 -5.07 11.82 29.29 0.35 -4.73 16 19 N -0.37 -5.58 3.22 -58.34 -0.19 -5.77 16 20 C 0.13 1.55 5.69 -4.04 -0.02 1.53 16 21 C -0.11 -1.35 3.13 -90.62 -0.28 -1.63 16 22 C -0.14 -1.68 9.06 37.16 0.34 -1.35 16 23 C -0.14 -1.42 9.19 37.16 0.34 -1.08 16 24 H 0.05 1.09 7.50 -51.93 -0.39 0.70 16 25 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.05 1.22 7.37 -51.93 -0.38 0.84 16 27 H 0.01 0.29 7.43 -51.93 -0.39 -0.09 16 28 H 0.09 2.25 6.13 -51.93 -0.32 1.93 16 29 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 30 H 0.33 6.42 6.49 -39.29 -0.25 6.17 16 31 H 0.10 1.83 7.38 -51.93 -0.38 1.45 16 32 H 0.04 0.64 7.12 -51.93 -0.37 0.27 16 33 H 0.21 2.30 8.06 -52.48 -0.42 1.88 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.10 1.03 7.10 -51.93 -0.37 0.67 16 36 H 0.08 1.19 6.38 -51.93 -0.33 0.86 16 37 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.84 6.97 -51.93 -0.36 0.48 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 335.98 15.07 5.06 5.06 Total: -1.00 -28.59 335.98 -9.11 -37.69 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -6.87 Total: 5.65 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -2.33 Total: -6.34 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: 0.05 Total: -57.47 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.59 -9.11 -37.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517391891.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.582 kcal (2) G-P(sol) polarization free energy of solvation -28.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds