Wall clock time and date at job start Mon Mar 30 2020 00:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47425 * 2 1 4 4 H 1.09002 * 109.47211 * 177.95328 * 3 2 1 5 5 C 1.50706 * 109.46695 * 57.95419 * 3 2 1 6 6 H 1.07997 * 120.00031 * 239.99216 * 5 3 2 7 7 C 1.37877 * 119.99848 * 60.00467 * 5 3 2 8 8 N 1.31516 * 120.00218 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99782 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46623 * 89.99983 * 9 7 5 11 11 H 1.48496 * 109.47155 * 209.99254 * 9 7 5 12 12 H 1.48497 * 109.47384 * 330.00013 * 9 7 5 13 13 N 1.46898 * 109.47205 * 297.95507 * 3 2 1 14 14 C 1.46899 * 111.00146 * 273.81477 * 13 3 2 15 15 C 1.50697 * 109.47199 * 174.49902 * 14 13 3 16 16 N 1.30832 * 125.96248 * 270.17619 * 15 14 13 17 17 C 1.33243 * 109.82727 * 180.23929 * 16 15 14 18 18 N 1.30706 * 108.94727 * 359.75547 * 17 16 15 19 19 N 1.34428 * 125.96089 * 90.00067 * 15 14 13 20 20 C 1.46506 * 126.82444 * 0.03841 * 19 15 14 21 21 C 1.53001 * 109.46962 * 269.71238 * 20 19 15 22 22 C 1.53003 * 109.46755 * 294.99494 * 21 20 19 23 23 C 1.53002 * 109.46675 * 174.99769 * 21 20 19 24 24 H 1.08998 * 109.46942 * 54.45749 * 1 2 3 25 25 H 1.09000 * 109.47376 * 174.45908 * 1 2 3 26 26 H 1.08997 * 109.47224 * 294.46371 * 1 2 3 27 27 H 1.09004 * 109.46587 * 239.99643 * 2 1 3 28 28 H 1.09000 * 109.46711 * 120.00274 * 2 1 3 29 29 H 0.96996 * 119.99650 * 180.02562 * 8 7 5 30 30 H 1.00904 * 110.99767 * 149.86035 * 13 3 2 31 31 H 1.09003 * 109.46853 * 54.50001 * 14 13 3 32 32 H 1.08998 * 109.46897 * 294.50020 * 14 13 3 33 33 H 1.08004 * 125.52293 * 179.72864 * 17 16 15 34 34 H 1.08998 * 109.46815 * 149.70873 * 20 19 15 35 35 H 1.08999 * 109.46284 * 29.70699 * 20 19 15 36 36 H 1.09001 * 109.47426 * 54.99999 * 21 20 19 37 37 H 1.09007 * 109.46637 * 180.02562 * 22 21 20 38 38 H 1.08991 * 109.47444 * 299.99840 * 22 21 20 39 39 H 1.08990 * 109.47002 * 60.00606 * 22 21 20 40 40 H 1.09000 * 109.46650 * 179.97438 * 23 21 20 41 41 H 1.08998 * 109.47201 * 299.99966 * 23 21 20 42 42 H 1.09001 * 109.47006 * 59.99973 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1295 1.4426 0.0367 5 6 1.4967 2.1673 1.2044 6 1 0.8798 3.0441 1.0741 7 6 1.7874 1.7112 2.4726 8 7 2.5385 0.6433 2.6314 9 14 1.1145 2.6101 3.9655 10 1 -0.2068 2.0401 4.3324 11 1 2.0549 2.4522 5.1039 12 1 0.9603 4.0523 3.6471 13 7 1.5912 2.1205 -1.2234 14 6 2.5278 1.8843 -2.3301 15 6 1.9688 2.4790 -3.5969 16 7 1.1953 1.8674 -4.4567 17 6 0.8955 2.6908 -5.4605 18 7 1.4724 3.8446 -5.2496 19 7 2.1752 3.7317 -4.0389 20 6 2.9787 4.7706 -3.3899 21 6 2.0928 5.5844 -2.4446 22 6 1.0372 6.3375 -3.2568 23 6 2.9547 6.5869 -1.6745 24 1 -0.3633 0.5974 -0.8362 25 1 -0.3634 -1.0228 -0.0992 26 1 -0.3633 0.4256 0.9354 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.7427 0.3223 3.5236 30 1 1.4629 3.1084 -1.0629 31 1 2.6691 0.8117 -2.4638 32 1 3.4858 2.3512 -2.1014 33 1 0.2766 2.4446 -6.3106 34 1 3.4021 5.4292 -4.1483 35 1 3.7843 4.3050 -2.8222 36 1 1.5996 4.9136 -1.7411 37 1 0.4063 6.9177 -2.5834 38 1 1.5304 7.0084 -3.9602 39 1 0.4233 5.6233 -3.8054 40 1 2.3235 7.1670 -1.0014 41 1 3.7067 6.0504 -1.0959 42 1 3.4479 7.2578 -2.3780 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517391891.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:36 Heat of formation + Delta-G solvation = 57.787687 kcal Electronic energy + Delta-G solvation = -21170.396021 eV Core-core repulsion = 18186.209617 eV Total energy + Delta-G solvation = -2984.186404 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.07249 -38.28123 -37.62109 -34.90371 -33.53224 -33.01618 -31.63420 -28.77679 -28.10529 -27.60448 -26.14901 -24.99067 -22.93753 -22.08264 -21.14960 -20.55284 -18.55421 -17.87721 -16.99472 -16.86257 -16.44622 -16.00918 -15.44823 -15.21899 -15.11418 -14.69514 -14.47654 -14.25006 -14.03901 -13.60399 -13.52091 -13.18369 -12.97227 -12.84378 -12.71827 -12.54746 -12.40406 -12.30573 -11.99319 -11.97032 -11.74340 -11.65475 -11.29557 -10.93011 -10.81323 -10.62333 -10.52997 -10.43718 -9.09402 -8.07748 -6.18898 0.60894 1.37551 1.43268 1.46484 1.53668 2.00425 2.44579 3.14562 3.22185 3.50187 3.66162 3.71170 3.86983 3.98966 4.10395 4.31548 4.35674 4.56654 4.61168 4.66510 4.69883 4.77119 4.83810 4.91034 4.96996 4.97731 5.16859 5.26294 5.32122 5.34137 5.41069 5.41920 5.56068 5.57621 5.73341 5.80642 5.85057 5.90302 6.28635 6.42052 6.71631 6.98960 7.19875 7.49325 8.97364 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.018305 B = 0.006165 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.253388 B = 4540.578341 C = 5570.748547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.099 4.099 3 C 0.228 3.772 4 H -0.018 1.018 5 C -0.521 4.521 6 H 0.055 0.945 7 C 0.024 3.976 8 N -0.912 5.912 9 Si 0.948 3.052 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.268 1.268 13 N -0.673 5.673 14 C 0.140 3.860 15 C 0.288 3.712 16 N -0.562 5.562 17 C 0.187 3.813 18 N -0.334 5.334 19 N -0.368 5.368 20 C 0.124 3.876 21 C -0.110 4.110 22 C -0.136 4.136 23 C -0.139 4.139 24 H 0.047 0.953 25 H 0.031 0.969 26 H 0.031 0.969 27 H 0.023 0.977 28 H 0.061 0.939 29 H 0.261 0.739 30 H 0.332 0.668 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.245 0.755 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.034 0.966 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.764 9.414 -10.911 14.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.138 4.138 3 C 0.120 3.880 4 H -0.001 1.001 5 C -0.560 4.560 6 H 0.073 0.927 7 C -0.176 4.176 8 N -0.551 5.551 9 Si 0.774 3.226 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.192 1.192 13 N -0.306 5.306 14 C 0.008 3.992 15 C 0.011 3.989 16 N -0.290 5.290 17 C -0.115 4.115 18 N -0.163 5.163 19 N -0.158 5.158 20 C 0.003 3.997 21 C -0.130 4.130 22 C -0.193 4.193 23 C -0.196 4.196 24 H 0.066 0.934 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.042 0.958 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.151 0.849 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.260 0.740 34 H 0.132 0.868 35 H 0.125 0.875 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.053 0.947 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.309 9.146 -11.382 14.660 hybrid contribution 0.397 0.614 1.355 1.540 sum 1.706 9.760 -10.027 14.096 Atomic orbital electron populations 1.21286 0.96531 0.98281 1.00303 1.21336 0.95927 0.97831 0.98700 1.18923 0.91909 0.91938 0.85244 1.00065 1.21343 1.31536 1.11999 0.91115 0.92673 1.25502 0.95279 0.95622 1.01179 1.69997 1.38185 1.24082 1.22886 0.85712 0.78005 0.79324 0.79524 1.20765 1.21130 1.19205 1.60540 1.47565 1.16221 1.06249 1.20330 0.93244 1.01112 0.84491 1.24297 0.94497 0.83434 0.96683 1.70481 1.18411 1.34910 1.05230 1.26568 0.99289 0.86778 0.98908 1.77903 1.14666 1.23495 1.00193 1.50538 1.37842 1.10813 1.16634 1.22233 0.92371 0.88601 0.96469 1.21511 0.97058 0.97717 0.96691 1.21723 0.98304 0.99685 0.99630 1.21727 0.99512 0.98308 1.00099 0.93357 0.94957 0.95029 0.95809 0.92088 0.92974 0.84937 0.88869 0.92314 0.73960 0.86791 0.87525 0.92486 0.92224 0.91319 0.94665 0.91816 0.92068 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.78 9.46 71.98 0.68 -4.10 16 2 C -0.10 -4.70 5.57 30.59 0.17 -4.53 16 3 C 0.23 10.70 2.30 44.17 0.10 10.80 16 4 H -0.02 -0.92 7.84 -2.39 -0.02 -0.94 16 5 C -0.52 -26.57 7.33 25.60 0.19 -26.39 16 6 H 0.06 2.80 7.60 -2.91 -0.02 2.77 16 7 C 0.02 1.25 5.30 84.65 0.45 1.70 16 8 N -0.91 -49.93 11.34 21.45 0.24 -49.69 16 9 Si 0.95 41.76 29.54 68.60 2.03 43.79 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 13 N -0.67 -26.75 5.49 -499.47 -2.74 -29.49 16 14 C 0.14 4.77 5.78 85.56 0.49 5.27 16 15 C 0.29 9.44 7.54 138.23 1.04 10.48 16 16 N -0.56 -19.34 11.19 -191.78 -2.15 -21.48 16 17 C 0.19 5.34 13.03 180.77 2.36 7.69 16 18 N -0.33 -9.75 11.82 -61.25 -0.72 -10.47 16 19 N -0.37 -10.45 3.22 -338.48 -1.09 -11.54 16 20 C 0.12 2.70 5.69 86.38 0.49 3.19 16 21 C -0.11 -2.44 3.13 -10.79 -0.03 -2.47 16 22 C -0.14 -3.02 9.06 71.98 0.65 -2.36 16 23 C -0.14 -2.45 9.19 71.98 0.66 -1.79 16 24 H 0.05 2.14 7.50 -2.39 -0.02 2.12 16 25 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.03 1.50 7.37 -2.39 -0.02 1.48 16 27 H 0.02 1.04 7.43 -2.38 -0.02 1.02 16 28 H 0.06 3.22 6.13 -2.39 -0.01 3.20 16 29 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 30 H 0.33 12.93 6.49 -89.69 -0.58 12.35 16 31 H 0.09 3.34 7.38 -2.39 -0.02 3.32 16 32 H 0.06 1.79 7.12 -2.39 -0.02 1.77 16 33 H 0.24 4.78 8.06 -2.91 -0.02 4.76 16 34 H 0.11 2.04 8.14 -2.39 -0.02 2.03 16 35 H 0.11 2.09 7.10 -2.39 -0.02 2.07 16 36 H 0.06 1.59 6.38 -2.39 -0.02 1.57 16 37 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.03 0.95 6.97 -2.39 -0.02 0.93 16 40 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -60.30 335.98 3.23 -57.07 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.42 Total: 24.32 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 7.25 Total: -2.50 kcal Atomic # 7 Polarization: -116.22 SS G_CDS: -6.46 Total: -122.68 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -60.30 3.23 -57.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517391891.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.854 kcal (2) G-P(sol) polarization free energy of solvation -60.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds