Wall clock time and date at job start Mon Mar 30 2020 00:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47320 * 2 1 4 4 H 1.09003 * 109.47569 * 54.73557 * 3 2 1 5 5 C 1.50703 * 109.47242 * 174.74064 * 3 2 1 6 6 H 1.07991 * 119.99816 * 119.99874 * 5 3 2 7 7 C 1.37881 * 119.99679 * 299.99325 * 5 3 2 8 8 N 1.31518 * 119.99943 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99722 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47529 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47177 * 120.00757 * 9 7 5 12 12 H 1.48510 * 109.46870 * 240.00276 * 9 7 5 13 13 N 1.46904 * 109.46874 * 294.73917 * 3 2 1 14 14 C 1.46897 * 111.00364 * 110.54076 * 13 3 2 15 15 C 1.50696 * 109.47600 * 176.09134 * 14 13 3 16 16 N 1.30827 * 125.96155 * 94.56863 * 15 14 13 17 17 C 1.33238 * 109.82919 * 180.02562 * 16 15 14 18 18 N 1.30710 * 108.94706 * 359.97438 * 17 16 15 19 19 N 1.34430 * 125.96014 * 274.27006 * 15 14 13 20 20 C 1.46502 * 126.82242 * 359.97438 * 19 15 14 21 21 C 1.53001 * 109.47053 * 274.54039 * 20 19 15 22 22 C 1.53004 * 109.46918 * 174.34926 * 21 20 19 23 23 C 1.53001 * 109.47079 * 294.35083 * 21 20 19 24 24 H 1.09002 * 109.46675 * 304.18284 * 1 2 3 25 25 H 1.08996 * 109.46890 * 184.18519 * 1 2 3 26 26 H 1.09001 * 109.46865 * 64.17943 * 1 2 3 27 27 H 1.09005 * 109.47170 * 119.99911 * 2 1 3 28 28 H 1.08998 * 109.47397 * 239.99717 * 2 1 3 29 29 H 0.97000 * 119.99851 * 179.97438 * 8 7 5 30 30 H 1.00901 * 110.99391 * 234.49131 * 13 3 2 31 31 H 1.09002 * 109.46867 * 296.09597 * 14 13 3 32 32 H 1.09006 * 109.47356 * 56.08537 * 14 13 3 33 33 H 1.08002 * 125.52699 * 180.02562 * 17 16 15 34 34 H 1.09000 * 109.47301 * 34.53919 * 20 19 15 35 35 H 1.08998 * 109.46865 * 154.54287 * 20 19 15 36 36 H 1.09002 * 109.47297 * 54.35490 * 21 20 19 37 37 H 1.08999 * 109.47032 * 60.00542 * 22 21 20 38 38 H 1.09007 * 109.47058 * 179.97438 * 22 21 20 39 39 H 1.08998 * 109.47126 * 299.99959 * 22 21 20 40 40 H 1.09007 * 109.46926 * 185.20935 * 23 21 20 41 41 H 1.09000 * 109.47159 * 305.20711 * 23 21 20 42 42 H 1.08998 * 109.47117 * 65.20925 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6019 1.9829 0.8391 5 6 3.5415 1.4444 0.1302 6 1 4.1500 1.8878 -0.6439 7 6 4.1381 0.8803 1.2379 8 7 3.3969 0.3400 2.1805 9 14 5.9990 0.8834 1.3997 10 1 6.5979 1.5475 0.2142 11 1 6.3878 1.6207 2.6287 12 1 6.4907 -0.5154 1.4852 13 7 1.6568 2.0973 -1.2579 14 6 0.6344 3.1262 -1.0257 15 6 0.3369 3.8398 -2.3192 16 7 -0.6281 3.5483 -3.1531 17 6 -0.5961 4.3832 -4.1910 18 7 0.3938 5.2217 -4.0309 19 7 1.0133 4.8906 -2.8147 20 6 2.1689 5.5561 -2.2081 21 6 1.6846 6.6117 -1.2120 22 6 2.8864 7.2079 -0.4763 23 6 0.9450 7.7205 -1.9633 24 1 -0.3633 0.5774 0.8502 25 1 -0.3633 -1.0249 0.0750 26 1 -0.3633 0.4476 -0.9251 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 3.8166 -0.0572 2.9596 30 1 2.4631 2.4872 -1.7228 31 1 -0.2755 2.6563 -0.6523 32 1 1.0007 3.8432 -0.2910 33 1 -1.2780 4.3699 -5.0284 34 1 2.7808 4.8192 -1.6878 35 1 2.7617 6.0361 -2.9867 36 1 1.0105 6.1489 -0.4912 37 1 3.5605 7.6707 -1.1970 38 1 2.5415 7.9603 0.2330 39 1 3.4133 6.4179 0.0589 40 1 0.6809 8.5170 -1.2675 41 1 1.5889 8.1208 -2.7464 42 1 0.0383 7.3137 -2.4109 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517391899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:38 Heat of formation + Delta-G solvation = 69.205932 kcal Electronic energy + Delta-G solvation = -21005.778248 eV Core-core repulsion = 18022.086976 eV Total energy + Delta-G solvation = -2983.691272 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.87306 -36.85007 -36.37012 -33.14550 -32.37321 -31.47367 -30.21073 -27.47413 -27.28971 -26.48982 -24.54358 -22.58856 -21.78127 -20.89126 -19.89454 -19.37419 -17.02092 -16.57040 -15.71455 -15.48563 -14.95545 -14.43411 -14.19730 -14.03517 -13.65428 -13.32413 -13.27919 -12.75732 -12.54032 -12.45362 -12.13669 -11.89182 -11.70067 -11.51298 -11.25705 -11.14232 -11.11176 -10.91242 -10.87605 -10.78351 -10.26476 -9.81085 -9.70193 -9.55457 -9.45366 -9.24902 -8.96637 -8.51441 -7.44600 -6.12572 -4.22255 1.83925 2.48693 3.20357 3.21988 3.29752 3.31896 4.29507 4.40396 4.49782 4.60903 4.79963 4.98033 5.09175 5.15675 5.28944 5.33811 5.48036 5.50388 5.55836 5.70239 5.75952 5.90661 5.93654 6.02211 6.13772 6.14800 6.39075 6.48783 6.54914 6.66910 6.69672 6.96352 7.04080 7.15735 7.40431 7.45376 7.67142 7.83931 8.09729 8.23871 8.39694 8.48518 8.88020 9.44557 10.91445 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.016668 B = 0.006114 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.445248 B = 4578.750542 C = 5732.482424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 C 0.218 3.782 4 H 0.018 0.982 5 C -0.534 4.534 6 H 0.058 0.942 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.893 3.107 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.282 1.282 13 N -0.676 5.676 14 C 0.136 3.864 15 C 0.298 3.702 16 N -0.536 5.536 17 C 0.190 3.810 18 N -0.329 5.329 19 N -0.372 5.372 20 C 0.129 3.871 21 C -0.112 4.112 22 C -0.146 4.146 23 C -0.141 4.141 24 H 0.035 0.965 25 H 0.028 0.972 26 H 0.048 0.952 27 H 0.090 0.910 28 H 0.036 0.964 29 H 0.262 0.738 30 H 0.329 0.671 31 H 0.101 0.899 32 H 0.046 0.954 33 H 0.211 0.789 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.526 11.299 -5.479 13.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.143 4.143 3 C 0.111 3.889 4 H 0.036 0.964 5 C -0.573 4.573 6 H 0.076 0.924 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.208 1.208 13 N -0.309 5.309 14 C 0.004 3.996 15 C 0.021 3.979 16 N -0.264 5.264 17 C -0.113 4.113 18 N -0.157 5.157 19 N -0.163 5.163 20 C 0.007 3.993 21 C -0.132 4.132 22 C -0.203 4.203 23 C -0.199 4.199 24 H 0.054 0.946 25 H 0.047 0.953 26 H 0.067 0.933 27 H 0.108 0.892 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.147 0.853 31 H 0.119 0.881 32 H 0.063 0.937 33 H 0.228 0.772 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.962 11.064 -5.905 13.153 hybrid contribution 1.621 0.606 0.611 1.835 sum -2.342 11.670 -5.294 13.027 Atomic orbital electron populations 1.21795 0.99246 0.98891 1.00130 1.21522 0.91853 0.99055 1.01859 1.19216 0.94172 0.91491 0.83976 0.96406 1.21516 0.91404 1.38986 1.05399 0.92415 1.24902 0.98186 0.94858 0.95611 1.69893 1.34851 1.37920 1.09359 0.86529 0.85532 0.77930 0.77938 1.19829 1.21015 1.20842 1.60864 1.13928 1.28274 1.27824 1.20602 0.99648 0.92961 0.86394 1.24603 0.88789 0.87260 0.97247 1.70505 1.23377 1.28206 1.04272 1.25877 0.96398 0.90737 0.98264 1.77937 1.12501 1.25272 1.00012 1.50358 1.25500 1.24576 1.15840 1.21974 0.84831 0.96043 0.96455 1.21525 0.98593 0.95971 0.97082 1.21780 0.97042 1.01325 1.00202 1.21784 1.00546 0.97671 0.99877 0.94584 0.95282 0.93302 0.89212 0.94475 0.92775 0.85330 0.88137 0.93663 0.77225 0.88134 0.88519 0.90461 0.92338 0.91956 0.91581 0.92644 0.92490 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.17 37.16 0.34 -2.57 16 2 C -0.10 -2.45 5.45 -26.73 -0.15 -2.59 16 3 C 0.22 5.10 2.18 -68.86 -0.15 4.95 16 4 H 0.02 0.45 7.52 -51.93 -0.39 0.06 16 5 C -0.53 -13.56 8.61 -34.44 -0.30 -13.86 16 6 H 0.06 1.44 7.34 -52.49 -0.39 1.06 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.84 11.29 55.43 0.63 -23.21 16 9 Si 0.89 20.15 29.54 -169.99 -5.02 15.13 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.68 -13.61 6.00 -109.22 -0.65 -14.26 16 14 C 0.14 2.38 5.35 -4.98 -0.03 2.36 16 15 C 0.30 5.05 7.45 -155.70 -1.16 3.89 16 16 N -0.54 -9.41 11.19 -11.97 -0.13 -9.54 16 17 C 0.19 2.86 13.03 -91.82 -1.20 1.67 16 18 N -0.33 -5.13 12.37 29.29 0.36 -4.77 16 19 N -0.37 -5.68 3.22 -58.34 -0.19 -5.86 16 20 C 0.13 1.63 5.52 -4.04 -0.02 1.60 16 21 C -0.11 -1.25 3.12 -90.62 -0.28 -1.53 16 22 C -0.15 -1.39 9.19 37.16 0.34 -1.05 16 23 C -0.14 -1.53 9.03 37.16 0.34 -1.19 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.97 7.27 -51.93 -0.38 0.60 16 27 H 0.09 2.34 5.95 -51.93 -0.31 2.03 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 30 H 0.33 6.59 7.58 -39.29 -0.30 6.29 16 31 H 0.10 1.81 7.12 -51.93 -0.37 1.44 16 32 H 0.05 0.76 7.59 -51.93 -0.39 0.36 16 33 H 0.21 2.28 8.06 -52.49 -0.42 1.86 16 34 H 0.10 1.30 7.78 -51.93 -0.40 0.90 16 35 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.08 0.95 7.82 -51.93 -0.41 0.54 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.71 7.59 -51.93 -0.39 0.31 16 LS Contribution 341.53 15.07 5.15 5.15 Total: -1.00 -28.28 341.53 -9.31 -37.60 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -7.09 Total: 6.45 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -2.36 Total: -6.67 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: 0.01 Total: -57.65 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.28 -9.31 -37.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517391899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.802 kcal (2) G-P(sol) polarization free energy of solvation -28.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds