Wall clock time and date at job start Mon Mar 30 2020 00:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47320 * 2 1 4 4 H 1.09003 * 109.47569 * 54.73557 * 3 2 1 5 5 C 1.50703 * 109.47242 * 174.74064 * 3 2 1 6 6 H 1.07991 * 119.99816 * 119.99874 * 5 3 2 7 7 C 1.37881 * 119.99679 * 299.99325 * 5 3 2 8 8 N 1.31518 * 119.99943 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99722 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47529 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47177 * 120.00757 * 9 7 5 12 12 H 1.48510 * 109.46870 * 240.00276 * 9 7 5 13 13 N 1.46904 * 109.46874 * 294.73917 * 3 2 1 14 14 C 1.46897 * 111.00364 * 110.54076 * 13 3 2 15 15 C 1.50696 * 109.47600 * 176.09134 * 14 13 3 16 16 N 1.30827 * 125.96155 * 94.56863 * 15 14 13 17 17 C 1.33238 * 109.82919 * 180.02562 * 16 15 14 18 18 N 1.30710 * 108.94706 * 359.97438 * 17 16 15 19 19 N 1.34430 * 125.96014 * 274.27006 * 15 14 13 20 20 C 1.46502 * 126.82242 * 359.97438 * 19 15 14 21 21 C 1.53001 * 109.47053 * 274.54039 * 20 19 15 22 22 C 1.53004 * 109.46918 * 174.34926 * 21 20 19 23 23 C 1.53001 * 109.47079 * 294.35083 * 21 20 19 24 24 H 1.09002 * 109.46675 * 304.18284 * 1 2 3 25 25 H 1.08996 * 109.46890 * 184.18519 * 1 2 3 26 26 H 1.09001 * 109.46865 * 64.17943 * 1 2 3 27 27 H 1.09005 * 109.47170 * 119.99911 * 2 1 3 28 28 H 1.08998 * 109.47397 * 239.99717 * 2 1 3 29 29 H 0.97000 * 119.99851 * 179.97438 * 8 7 5 30 30 H 1.00901 * 110.99391 * 234.49131 * 13 3 2 31 31 H 1.09002 * 109.46867 * 296.09597 * 14 13 3 32 32 H 1.09006 * 109.47356 * 56.08537 * 14 13 3 33 33 H 1.08002 * 125.52699 * 180.02562 * 17 16 15 34 34 H 1.09000 * 109.47301 * 34.53919 * 20 19 15 35 35 H 1.08998 * 109.46865 * 154.54287 * 20 19 15 36 36 H 1.09002 * 109.47297 * 54.35490 * 21 20 19 37 37 H 1.08999 * 109.47032 * 60.00542 * 22 21 20 38 38 H 1.09007 * 109.47058 * 179.97438 * 22 21 20 39 39 H 1.08998 * 109.47126 * 299.99959 * 22 21 20 40 40 H 1.09007 * 109.46926 * 185.20935 * 23 21 20 41 41 H 1.09000 * 109.47159 * 305.20711 * 23 21 20 42 42 H 1.08998 * 109.47117 * 65.20925 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6019 1.9829 0.8391 5 6 3.5415 1.4444 0.1302 6 1 4.1500 1.8878 -0.6439 7 6 4.1381 0.8803 1.2379 8 7 3.3969 0.3400 2.1805 9 14 5.9990 0.8834 1.3997 10 1 6.5979 1.5475 0.2142 11 1 6.3878 1.6207 2.6287 12 1 6.4907 -0.5154 1.4852 13 7 1.6568 2.0973 -1.2579 14 6 0.6344 3.1262 -1.0257 15 6 0.3369 3.8398 -2.3192 16 7 -0.6281 3.5483 -3.1531 17 6 -0.5961 4.3832 -4.1910 18 7 0.3938 5.2217 -4.0309 19 7 1.0133 4.8906 -2.8147 20 6 2.1689 5.5561 -2.2081 21 6 1.6846 6.6117 -1.2120 22 6 2.8864 7.2079 -0.4763 23 6 0.9450 7.7205 -1.9633 24 1 -0.3633 0.5774 0.8502 25 1 -0.3633 -1.0249 0.0750 26 1 -0.3633 0.4476 -0.9251 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 3.8166 -0.0572 2.9596 30 1 2.4631 2.4872 -1.7228 31 1 -0.2755 2.6563 -0.6523 32 1 1.0007 3.8432 -0.2910 33 1 -1.2780 4.3699 -5.0284 34 1 2.7808 4.8192 -1.6878 35 1 2.7617 6.0361 -2.9867 36 1 1.0105 6.1489 -0.4912 37 1 3.5605 7.6707 -1.1970 38 1 2.5415 7.9603 0.2330 39 1 3.4133 6.4179 0.0589 40 1 0.6809 8.5170 -1.2675 41 1 1.5889 8.1208 -2.7464 42 1 0.0383 7.3137 -2.4109 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517391899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:38 Heat of formation + Delta-G solvation = 54.192268 kcal Electronic energy + Delta-G solvation = -21006.429289 eV Core-core repulsion = 18022.086976 eV Total energy + Delta-G solvation = -2984.342313 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.10166 -38.24706 -37.67006 -34.84826 -33.55660 -33.16505 -31.70871 -29.11489 -28.13469 -27.66748 -26.16347 -24.35761 -22.95157 -21.98240 -21.40897 -20.86231 -18.76096 -17.88384 -17.03283 -16.69496 -16.51953 -15.99648 -15.67390 -15.24734 -14.87452 -14.71663 -14.48405 -14.22624 -14.09126 -13.54185 -13.39264 -13.18068 -13.06597 -12.93267 -12.73829 -12.65121 -12.60482 -12.36927 -12.08747 -12.03050 -11.78117 -11.60863 -11.38723 -10.96722 -10.88675 -10.67096 -10.51093 -10.45933 -9.13210 -8.09935 -6.25900 0.58703 1.33712 1.41576 1.45656 1.54556 1.97912 2.42369 3.11818 3.17238 3.46313 3.64584 3.72309 3.86760 3.95051 4.04032 4.31405 4.41017 4.52644 4.61107 4.62513 4.67797 4.74265 4.76449 4.87394 4.90171 4.94246 5.10381 5.13208 5.24280 5.31686 5.39418 5.40997 5.53906 5.55124 5.63486 5.70866 5.82732 5.93384 6.25616 6.36292 6.67787 6.96901 7.16486 7.44306 8.93116 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.016668 B = 0.006114 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.445248 B = 4578.750542 C = 5732.482424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.101 4.101 3 C 0.227 3.773 4 H -0.003 1.003 5 C -0.546 4.546 6 H 0.059 0.941 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.953 3.047 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.285 1.285 13 N -0.674 5.674 14 C 0.145 3.855 15 C 0.285 3.715 16 N -0.560 5.560 17 C 0.188 3.812 18 N -0.336 5.336 19 N -0.367 5.367 20 C 0.124 3.876 21 C -0.107 4.107 22 C -0.141 4.141 23 C -0.134 4.134 24 H 0.036 0.964 25 H 0.044 0.956 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.025 0.975 29 H 0.262 0.738 30 H 0.330 0.670 31 H 0.095 0.905 32 H 0.053 0.947 33 H 0.247 0.753 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.124 12.492 -6.255 14.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.140 4.140 3 C 0.119 3.881 4 H 0.015 0.985 5 C -0.585 4.585 6 H 0.077 0.923 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.779 3.221 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.211 1.211 13 N -0.307 5.307 14 C 0.013 3.987 15 C 0.008 3.992 16 N -0.289 5.289 17 C -0.114 4.114 18 N -0.164 5.164 19 N -0.157 5.157 20 C 0.002 3.998 21 C -0.127 4.127 22 C -0.199 4.199 23 C -0.192 4.192 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.148 0.852 31 H 0.113 0.887 32 H 0.071 0.929 33 H 0.263 0.737 34 H 0.113 0.887 35 H 0.129 0.871 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.556 12.279 -6.692 14.429 hybrid contribution 1.465 0.270 0.812 1.696 sum -2.092 12.548 -5.879 14.014 Atomic orbital electron populations 1.21643 0.96805 0.99986 1.00326 1.21401 0.94019 0.98710 0.99874 1.18978 0.93182 0.91459 0.84484 0.98545 1.21833 0.92610 1.38661 1.05385 0.92306 1.25612 1.02113 0.94663 0.95452 1.70012 1.36399 1.38659 1.09798 0.85582 0.80791 0.77628 0.78060 1.19094 1.20625 1.21100 1.60733 1.14257 1.29504 1.26167 1.20427 0.98499 0.92502 0.87245 1.24313 0.89586 0.88118 0.97150 1.70475 1.23929 1.29311 1.05155 1.26598 0.96591 0.89716 0.98485 1.77917 1.12815 1.25589 1.00035 1.50502 1.25577 1.24034 1.15617 1.22205 0.84232 0.96218 0.97116 1.21487 0.99044 0.95650 0.96490 1.21751 0.96411 1.01227 1.00478 1.21717 0.99566 0.97675 1.00198 0.94441 0.93734 0.92936 0.91867 0.95616 0.92821 0.85243 0.88664 0.92941 0.73726 0.88719 0.87121 0.91901 0.90944 0.90902 0.92504 0.91287 0.91752 0.94775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.23 9.17 71.98 0.66 -4.57 16 2 C -0.10 -4.80 5.45 30.60 0.17 -4.63 16 3 C 0.23 10.69 2.18 44.17 0.10 10.79 16 4 H 0.00 -0.16 7.52 -2.39 -0.02 -0.18 16 5 C -0.55 -27.81 8.61 25.60 0.22 -27.59 16 6 H 0.06 2.92 7.34 -2.92 -0.02 2.89 16 7 C 0.02 1.14 5.29 84.66 0.45 1.59 16 8 N -0.91 -49.72 11.29 21.45 0.24 -49.48 16 9 Si 0.95 41.19 29.54 68.60 2.03 43.21 16 10 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 12 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 13 N -0.67 -27.12 6.00 -499.45 -2.99 -30.12 16 14 C 0.14 5.07 5.35 85.56 0.46 5.53 16 15 C 0.29 9.51 7.45 138.23 1.03 10.54 16 16 N -0.56 -19.10 11.19 -191.79 -2.15 -21.24 16 17 C 0.19 5.35 13.03 180.77 2.36 7.71 16 18 N -0.34 -9.95 12.37 -61.25 -0.76 -10.70 16 19 N -0.37 -10.82 3.22 -338.49 -1.09 -11.91 16 20 C 0.12 2.97 5.52 86.38 0.48 3.44 16 21 C -0.11 -2.25 3.12 -10.79 -0.03 -2.28 16 22 C -0.14 -2.44 9.19 71.98 0.66 -1.78 16 23 C -0.13 -2.67 9.03 71.98 0.65 -2.02 16 24 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.05 2.06 7.27 -2.39 -0.02 2.04 16 27 H 0.06 3.35 5.95 -2.38 -0.01 3.34 16 28 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.26 13.68 8.31 -92.71 -0.77 12.91 16 30 H 0.33 13.16 7.58 -89.69 -0.68 12.48 16 31 H 0.10 3.43 7.12 -2.39 -0.02 3.41 16 32 H 0.05 1.76 7.59 -2.38 -0.02 1.74 16 33 H 0.25 4.71 8.06 -2.91 -0.02 4.68 16 34 H 0.09 2.39 7.78 -2.39 -0.02 2.37 16 35 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.06 1.51 7.82 -2.39 -0.02 1.49 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.03 0.82 7.59 -2.39 -0.02 0.80 16 Total: -1.00 -59.46 341.53 2.78 -56.68 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 0.31 Total: 26.84 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: 7.19 Total: -3.28 kcal Atomic # 7 Polarization: -116.71 SS G_CDS: -6.75 Total: -123.45 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.21 kcal Total: -59.46 2.78 -56.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517391899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.869 kcal (2) G-P(sol) polarization free energy of solvation -59.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds