Wall clock time and date at job start Mon Mar 30 2020 00:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36938 * 120.00622 * 2 1 4 4 H 1.07999 * 120.00291 * 202.58893 * 3 2 1 5 5 C 1.38814 * 119.99620 * 22.58550 * 3 2 1 6 6 N 1.31620 * 119.99818 * 13.15598 * 5 3 2 7 7 Si 1.86795 * 119.99772 * 193.15950 * 5 3 2 8 8 H 1.48504 * 109.47441 * 60.00118 * 7 5 3 9 9 H 1.48504 * 109.47055 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47257 * 299.99816 * 7 5 3 11 11 C 1.46507 * 119.99664 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.43492 * 181.09074 * 11 2 1 13 13 C 1.54635 * 110.48275 * 303.76798 * 11 2 1 14 14 C 1.54661 * 101.68207 * 93.67014 * 13 11 2 15 15 N 1.46766 * 105.38297 * 25.76315 * 14 13 11 16 16 C 1.46503 * 124.34606 * 162.85736 * 15 14 13 17 17 C 1.52994 * 109.47180 * 119.72785 * 16 15 14 18 18 C 1.53000 * 109.47306 * 179.97438 * 17 16 15 19 19 C 1.52995 * 109.46794 * 299.99894 * 18 17 16 20 20 C 1.53003 * 109.47242 * 59.99924 * 19 18 17 21 21 C 1.52995 * 109.46684 * 239.72536 * 16 15 14 22 22 C 1.34419 * 111.30010 * 342.58928 * 15 14 13 23 23 O 1.21280 * 124.93924 * 180.69182 * 22 15 14 24 24 H 1.09000 * 109.46834 * 271.28049 * 1 2 3 25 25 H 1.08999 * 109.46411 * 31.27379 * 1 2 3 26 26 H 1.08993 * 109.47191 * 151.27374 * 1 2 3 27 27 H 0.97001 * 119.99479 * 180.02562 * 6 5 3 28 28 H 1.09004 * 110.96482 * 211.99982 * 13 11 2 29 29 H 1.08992 * 110.96830 * 335.72580 * 13 11 2 30 30 H 1.09002 * 110.39652 * 266.73474 * 14 13 11 31 31 H 1.08990 * 110.18149 * 144.68007 * 14 13 11 32 32 H 1.08994 * 109.47111 * 359.72529 * 16 15 14 33 33 H 1.09007 * 109.46782 * 299.99839 * 17 16 15 34 34 H 1.09005 * 109.47193 * 59.99395 * 17 16 15 35 35 H 1.08998 * 109.46855 * 179.97438 * 18 17 16 36 36 H 1.09004 * 109.46816 * 59.99838 * 18 17 16 37 37 H 1.09004 * 109.47393 * 299.99590 * 19 18 17 38 38 H 1.09004 * 109.47027 * 179.97438 * 19 18 17 39 39 H 1.09007 * 109.46916 * 179.97438 * 20 19 18 40 40 H 1.08996 * 109.47070 * 60.00154 * 20 19 18 41 41 H 1.09004 * 109.47393 * 299.99811 * 21 16 15 42 42 H 1.08998 * 109.47553 * 60.00485 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1677 1.2217 -0.3593 5 6 1.5357 2.3419 0.4617 6 7 0.4064 2.2639 1.1333 7 14 2.3119 4.0082 0.1298 8 1 2.4206 4.2207 -1.3359 9 1 1.4661 5.0752 0.7227 10 1 3.6658 4.0537 0.7384 11 6 2.1975 -1.2688 -0.0006 12 1 3.2722 -1.0879 0.0190 13 6 1.7707 -2.1405 1.2032 14 6 0.6578 -3.0141 0.5784 15 7 0.9665 -3.0711 -0.8553 16 6 0.4090 -4.0593 -1.7822 17 6 -0.3793 -3.3415 -2.8795 18 6 -0.9609 -4.3734 -3.8478 19 6 0.1769 -5.1774 -4.4801 20 6 0.9652 -5.8953 -3.3827 21 6 1.5464 -4.8637 -2.4145 22 6 1.8217 -2.0965 -1.2098 23 8 2.2322 -1.9081 -2.3353 24 1 -0.3633 0.0230 1.0274 25 1 -0.3632 0.8784 -0.5335 26 1 -0.3633 -0.9011 -0.4939 27 1 -0.0230 3.0718 1.4556 28 1 2.6010 -2.7526 1.5554 29 1 1.3735 -1.5243 2.0097 30 1 -0.3185 -2.5557 0.7362 31 1 0.6793 -4.0151 1.0089 32 1 -0.2544 -4.7326 -1.2395 33 1 -1.1896 -2.7682 -2.4289 34 1 0.2842 -2.6679 -3.4221 35 1 -1.5228 -3.8620 -4.6293 36 1 -1.6242 -5.0472 -3.3054 37 1 0.8402 -4.5037 -5.0225 38 1 -0.2375 -5.9129 -5.1696 39 1 1.7756 -6.4685 -3.8333 40 1 0.3020 -6.5690 -2.8404 41 1 2.2099 -4.1903 -2.9572 42 1 2.1081 -5.3752 -1.6328 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528371246.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:28 Heat of formation + Delta-G solvation = -40.454005 kcal Electronic energy + Delta-G solvation = -21722.044878 eV Core-core repulsion = 18701.305643 eV Total energy + Delta-G solvation = -3020.739235 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.70884 -39.00133 -37.63866 -36.43031 -33.75919 -32.01012 -31.69478 -29.36357 -28.54334 -27.70401 -24.55667 -23.62893 -23.50985 -22.07265 -20.94887 -19.72827 -19.00086 -17.79078 -17.51744 -16.41026 -16.29077 -15.70928 -15.32619 -15.15839 -15.09956 -14.85326 -14.77369 -14.27446 -13.99557 -13.73054 -13.46744 -13.18761 -13.12495 -12.98859 -12.89692 -12.60603 -12.43986 -12.22267 -12.09097 -12.06778 -11.89316 -11.73428 -11.55567 -11.24679 -11.15796 -10.88653 -10.44343 -9.54019 -8.82089 -7.89618 -5.36797 1.43621 1.47736 1.52963 1.66476 2.12667 2.50397 3.24328 3.57304 3.61231 3.75700 3.82432 3.93306 4.02317 4.19638 4.27100 4.30834 4.34285 4.41025 4.56870 4.60038 4.62899 4.67494 4.74469 4.81527 4.92634 5.09251 5.09929 5.13880 5.20751 5.22669 5.27575 5.28027 5.30155 5.39004 5.51742 5.56745 5.62613 5.87174 6.23277 6.27794 7.07649 7.35454 7.75510 8.19024 9.14328 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031219 B = 0.005231 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.674340 B = 5351.185961 C = 5549.567835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.185 3.815 2 N -0.591 5.591 3 C -0.274 4.274 4 H 0.063 0.937 5 C -0.041 4.041 6 N -0.930 5.930 7 Si 0.969 3.031 8 H -0.287 1.287 9 H -0.287 1.287 10 H -0.271 1.271 11 C 0.135 3.865 12 H 0.081 0.919 13 C -0.139 4.139 14 C 0.109 3.891 15 N -0.611 5.611 16 C 0.157 3.843 17 C -0.134 4.134 18 C -0.106 4.106 19 C -0.122 4.122 20 C -0.106 4.106 21 C -0.128 4.128 22 C 0.504 3.496 23 O -0.576 6.576 24 H 0.018 0.982 25 H 0.011 0.989 26 H 0.020 0.980 27 H 0.251 0.749 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.051 0.949 34 H 0.035 0.965 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.039 0.961 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.038 0.962 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.964 -18.722 -2.995 19.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.314 5.314 3 C -0.404 4.404 4 H 0.080 0.920 5 C -0.237 4.237 6 N -0.576 5.576 7 Si 0.796 3.204 8 H -0.214 1.214 9 H -0.213 1.213 10 H -0.197 1.197 11 C 0.024 3.976 12 H 0.099 0.901 13 C -0.178 4.178 14 C -0.013 4.013 15 N -0.345 5.345 16 C 0.056 3.944 17 C -0.172 4.172 18 C -0.144 4.144 19 C -0.159 4.159 20 C -0.144 4.144 21 C -0.167 4.167 22 C 0.290 3.710 23 O -0.455 6.455 24 H 0.037 0.963 25 H 0.030 0.970 26 H 0.038 0.962 27 H 0.061 0.939 28 H 0.121 0.879 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.131 0.869 32 H 0.134 0.866 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.058 0.942 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.057 0.943 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.899 -18.539 -3.538 19.095 hybrid contribution 0.397 1.709 -0.238 1.770 sum -2.502 -16.830 -3.776 17.429 Atomic orbital electron populations 1.20513 0.82156 0.95596 0.97662 1.43793 1.02006 1.00089 1.85498 1.19457 0.98309 0.86696 1.35892 0.91956 1.25670 0.98493 1.01457 0.98071 1.70186 1.20190 1.27872 1.39343 0.85334 0.78059 0.79479 0.77506 1.21368 1.21286 1.19684 1.21278 0.97323 0.86421 0.92623 0.90100 1.23039 0.99458 0.97880 0.97460 1.22257 0.98384 1.01946 0.78672 1.48573 1.45009 1.30400 1.10469 1.21163 0.94946 0.88798 0.89502 1.21890 0.98864 0.98869 0.97588 1.21457 0.97885 0.97121 0.97973 1.21574 0.97099 0.99087 0.98153 1.21456 1.00062 0.96825 0.96072 1.21857 0.97626 0.97796 0.99411 1.22094 0.78077 0.80475 0.90344 1.90554 1.58298 1.71792 1.24836 0.96333 0.96973 0.96157 0.93935 0.87892 0.90225 0.91667 0.86906 0.86555 0.92979 0.94631 0.91853 0.89554 0.94230 0.89752 0.91029 0.89537 0.94266 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.34 7.69 127.77 0.98 10.32 16 2 N -0.59 -30.67 2.86 -702.81 -2.01 -32.68 16 3 C -0.27 -15.73 9.60 84.03 0.81 -14.92 16 4 H 0.06 3.58 7.84 -2.91 -0.02 3.56 16 5 C -0.04 -2.34 5.07 84.86 0.43 -1.91 16 6 N -0.93 -54.64 10.72 21.65 0.23 -54.41 16 7 Si 0.97 46.22 29.57 68.60 2.03 48.25 16 8 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 9 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 C 0.13 5.77 3.51 44.98 0.16 5.93 16 12 H 0.08 3.58 7.92 -2.39 -0.02 3.56 16 13 C -0.14 -4.38 6.49 31.72 0.21 -4.18 16 14 C 0.11 2.88 6.39 86.89 0.56 3.44 16 15 N -0.61 -19.26 2.54 -793.71 -2.02 -21.27 16 16 C 0.16 4.04 2.75 44.99 0.12 4.16 16 17 C -0.13 -3.83 5.21 30.59 0.16 -3.67 16 18 C -0.11 -2.17 5.92 30.59 0.18 -1.99 16 19 C -0.12 -2.33 5.92 30.59 0.18 -2.15 16 20 C -0.11 -1.87 5.92 30.58 0.18 -1.69 16 21 C -0.13 -3.14 5.20 30.58 0.16 -2.99 16 22 C 0.50 21.00 6.17 87.90 0.54 21.54 16 23 O -0.58 -28.44 15.12 -3.03 -0.05 -28.48 16 24 H 0.02 0.96 7.57 -2.39 -0.02 0.94 16 25 H 0.01 0.66 7.05 -2.39 -0.02 0.64 16 26 H 0.02 0.91 5.68 -2.39 -0.01 0.89 16 27 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 28 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 29 H 0.08 2.81 8.08 -2.39 -0.02 2.79 16 30 H 0.07 1.81 7.01 -2.39 -0.02 1.79 16 31 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.12 2.19 8.07 -2.39 -0.02 2.17 16 33 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.03 1.33 6.77 -2.38 -0.02 1.32 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 38 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.04 1.29 6.80 -2.38 -0.02 1.27 16 42 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -70.96 320.52 3.83 -67.13 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 0.98 Total: 9.57 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: 4.67 Total: 11.90 kcal Atomic # 7 Polarization: -104.57 SS G_CDS: -3.80 Total: -108.37 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.05 Total: -28.48 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -70.96 3.83 -67.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528371246.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.676 kcal (2) G-P(sol) polarization free energy of solvation -70.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds