Wall clock time and date at job start Mon Mar 30 2020 01:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47455 * 2 1 4 4 H 1.09010 * 109.46945 * 304.52309 * 3 2 1 5 5 C 1.50698 * 109.47297 * 184.52489 * 3 2 1 6 6 H 1.07995 * 120.00080 * 244.77163 * 5 3 2 7 7 C 1.37873 * 120.00143 * 64.76930 * 5 3 2 8 8 N 1.31508 * 120.00442 * 195.80116 * 7 5 3 9 9 Si 1.86804 * 120.00013 * 15.80527 * 7 5 3 10 10 H 1.48504 * 109.47270 * 87.18525 * 9 7 5 11 11 H 1.48498 * 109.47229 * 207.18668 * 9 7 5 12 12 H 1.48501 * 109.46907 * 327.18623 * 9 7 5 13 13 N 1.46896 * 109.47216 * 64.52213 * 3 2 1 14 14 C 1.46900 * 111.00166 * 258.64278 * 13 3 2 15 15 C 1.53117 * 109.52374 * 274.67946 * 14 13 3 16 16 C 1.53047 * 109.27451 * 182.50548 * 15 14 13 17 17 N 1.46844 * 109.57585 * 59.08540 * 16 15 14 18 18 C 1.46903 * 110.99907 * 174.19273 * 17 16 15 19 19 C 1.53000 * 109.47249 * 294.21114 * 18 17 16 20 20 C 1.53002 * 117.49757 * 243.74866 * 19 18 17 21 21 C 1.52995 * 117.49862 * 175.08922 * 19 18 17 22 22 C 1.46844 * 111.19569 * 298.28720 * 17 16 15 23 23 C 1.53041 * 109.52259 * 61.74719 * 22 17 16 24 24 H 1.09004 * 109.46906 * 54.46631 * 1 2 3 25 25 H 1.09000 * 109.46912 * 294.46789 * 1 2 3 26 26 H 1.09001 * 109.47646 * 174.46640 * 1 2 3 27 27 H 1.09002 * 109.46993 * 120.00426 * 2 1 3 28 28 H 1.09006 * 109.46904 * 240.00177 * 2 1 3 29 29 H 0.97005 * 120.00641 * 179.97438 * 8 7 5 30 30 H 1.00906 * 110.99860 * 22.59298 * 13 3 2 31 31 H 1.09001 * 109.52730 * 34.81052 * 14 13 3 32 32 H 1.08997 * 109.50556 * 302.38372 * 15 14 13 33 33 H 1.09001 * 109.50196 * 62.50456 * 15 14 13 34 34 H 1.09006 * 109.40884 * 299.07009 * 16 15 14 35 35 H 1.09002 * 109.45118 * 179.13286 * 16 15 14 36 36 H 1.09007 * 109.46936 * 54.20805 * 18 17 16 37 37 H 1.09001 * 109.47091 * 174.20622 * 18 17 16 38 38 H 1.09005 * 115.54558 * 29.41494 * 19 18 17 39 39 H 1.08997 * 117.50116 * 359.97438 * 20 19 18 40 40 H 1.08999 * 117.49501 * 145.01541 * 20 19 18 41 41 H 1.09007 * 117.49486 * 214.97981 * 21 19 18 42 42 H 1.08996 * 117.50034 * 359.97438 * 21 19 18 43 43 H 1.08994 * 109.46794 * 301.72600 * 22 17 16 44 44 H 1.09009 * 109.46054 * 181.75683 * 22 17 16 45 45 H 1.09004 * 109.49845 * 180.87587 * 23 22 17 46 46 H 1.08999 * 109.50101 * 60.75822 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6121 1.9791 -0.8468 5 6 3.5429 1.4438 -0.1121 6 1 4.1447 1.8206 0.7016 7 6 4.1495 0.9641 -1.2535 8 7 5.4319 0.6728 -1.2438 9 14 3.1499 0.7281 -2.8138 10 1 3.1292 1.9969 -3.5852 11 1 3.7651 -0.3426 -3.6386 12 1 1.7607 0.3424 -2.4580 13 7 1.6417 2.1027 1.2503 14 6 0.4759 2.9711 1.0387 15 6 0.9431 4.3445 0.5486 16 6 -0.2701 5.2639 0.3900 17 7 -0.9621 5.3921 1.6788 18 6 -2.0505 6.3753 1.5964 19 6 -1.4633 7.7669 1.3521 20 6 -1.6733 8.8230 2.4391 21 6 -2.4451 8.9172 1.1205 22 6 -1.4613 4.0923 2.1450 23 6 -0.2836 3.1384 2.3577 24 1 -0.3633 0.5973 -0.8363 25 1 -0.3633 0.4256 0.9354 26 1 -0.3634 -1.0228 -0.0991 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 5.8587 0.3349 -2.0468 30 1 1.4607 1.4248 1.9754 31 1 -0.1819 2.5230 0.2940 32 1 1.6323 4.7750 1.2751 33 1 1.4468 4.2361 -0.4119 34 1 -0.9517 4.8401 -0.3476 35 1 0.0609 6.2472 0.0559 36 1 -2.7161 6.1124 0.7741 37 1 -2.6108 6.3763 2.5313 38 1 -0.5220 7.7901 0.8029 39 1 -2.2302 8.5266 3.3279 40 1 -0.8704 9.5413 2.6046 41 1 -2.1496 9.6975 0.4191 42 1 -3.5093 8.6826 1.1417 43 1 -2.1373 3.6741 1.3993 44 1 -1.9958 4.2247 3.0858 45 1 -0.6558 2.1689 2.6889 46 1 0.3857 3.5495 3.1135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000545168076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:01 Heat of formation + Delta-G solvation = 23.111881 kcal Electronic energy + Delta-G solvation = -21215.003952 eV Core-core repulsion = 18332.854236 eV Total energy + Delta-G solvation = -2882.149717 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.32217 -37.54792 -36.11653 -33.15014 -31.83376 -30.69465 -29.74687 -27.38757 -25.63542 -23.20897 -22.75132 -22.52689 -21.84750 -20.26985 -19.78343 -19.31038 -16.79169 -16.36902 -15.26847 -15.15890 -15.06390 -14.55035 -14.35373 -13.97656 -13.64199 -13.38520 -13.08539 -12.83768 -12.68194 -12.49570 -12.01406 -11.76003 -11.72521 -11.68328 -11.32839 -11.06620 -10.95182 -10.78891 -10.67956 -10.59634 -10.40976 -10.28272 -10.04446 -9.88807 -9.86351 -9.35488 -9.22940 -8.33128 -8.24786 -7.27570 -6.01838 -3.92618 3.29834 3.38543 3.40934 3.55748 3.95928 4.46888 4.55871 4.76185 4.84739 4.89328 5.05477 5.15910 5.24865 5.26936 5.34452 5.41643 5.45261 5.52584 5.60245 5.65691 5.72137 5.76444 5.78159 5.85573 5.90971 5.93191 5.96647 6.02436 6.06280 6.18219 6.30212 6.35850 6.48867 6.56016 6.60855 6.82430 6.84125 6.96933 7.17123 7.18339 7.23629 7.83086 8.03827 8.43456 8.78608 9.16678 9.65563 11.11838 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.026210 B = 0.004409 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.036667 B = 6349.408569 C = 6758.073373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.152 4.152 3 C 0.194 3.806 4 H 0.022 0.978 5 C -0.496 4.496 6 H 0.080 0.920 7 C 0.071 3.929 8 N -0.896 5.896 9 Si 0.856 3.144 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.256 1.256 13 N -0.667 5.667 14 C 0.087 3.913 15 C -0.103 4.103 16 C 0.055 3.945 17 N -0.533 5.533 18 C 0.087 3.913 19 C -0.145 4.145 20 C -0.174 4.174 21 C -0.185 4.185 22 C 0.062 3.938 23 C -0.117 4.117 24 H 0.043 0.957 25 H 0.044 0.956 26 H 0.040 0.960 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.261 0.739 30 H 0.327 0.673 31 H 0.032 0.968 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.026 0.974 35 H 0.074 0.926 36 H 0.033 0.967 37 H 0.072 0.928 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.028 0.972 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.264 10.265 5.230 20.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.191 4.191 3 C 0.085 3.915 4 H 0.039 0.961 5 C -0.535 4.535 6 H 0.098 0.902 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.684 3.316 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.181 1.181 13 N -0.297 5.297 14 C -0.023 4.023 15 C -0.141 4.141 16 C -0.073 4.073 17 N -0.258 5.258 18 C -0.041 4.041 19 C -0.163 4.163 20 C -0.211 4.211 21 C -0.223 4.223 22 C -0.066 4.066 23 C -0.156 4.156 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.145 0.855 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.045 0.955 35 H 0.093 0.907 36 H 0.051 0.949 37 H 0.090 0.910 38 H 0.128 0.872 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.046 0.954 44 H 0.089 0.911 45 H 0.079 0.921 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.302 10.855 5.392 20.314 hybrid contribution -1.721 -1.144 -1.760 2.714 sum -18.023 9.711 3.633 20.793 Atomic orbital electron populations 1.21931 0.98654 1.00057 1.00366 1.22639 0.92621 1.01854 1.02031 1.19576 0.96526 0.87952 0.87401 0.96071 1.21004 0.89084 1.40310 1.03059 0.90190 1.24894 0.94677 0.94885 0.98549 1.69972 1.10938 1.44038 1.28452 0.87349 0.81747 0.77939 0.84605 1.20662 1.21599 1.18055 1.60630 1.33930 1.25213 1.09889 1.21573 0.91280 0.94487 0.95003 1.21573 0.96146 0.93955 1.02436 1.22204 0.96086 1.00114 0.88888 1.61886 1.26718 1.08023 1.29128 1.21628 0.92088 0.90174 1.00243 1.22322 1.00678 0.90059 1.03284 1.22982 1.02953 1.02385 0.92780 1.22978 0.97707 1.01252 1.00344 1.22019 0.96374 0.88963 0.99276 1.21778 0.96838 0.97997 0.98946 0.93821 0.93683 0.94076 0.92383 0.92038 0.92871 0.85515 0.94991 0.90461 0.91232 0.95528 0.90750 0.94851 0.90964 0.87208 0.88940 0.88942 0.88906 0.89073 0.95384 0.91129 0.92113 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 8.62 37.16 0.32 -2.33 16 2 C -0.15 -3.22 4.57 -26.73 -0.12 -3.34 16 3 C 0.19 4.47 1.57 -68.87 -0.11 4.36 16 4 H 0.02 0.51 5.90 -51.92 -0.31 0.21 16 5 C -0.50 -13.91 9.27 -34.44 -0.32 -14.23 16 6 H 0.08 2.50 8.06 -52.49 -0.42 2.07 16 7 C 0.07 2.05 5.33 -17.82 -0.09 1.95 16 8 N -0.90 -27.45 13.96 55.43 0.77 -26.67 16 9 Si 0.86 21.17 25.84 -169.99 -4.39 16.78 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 12 H -0.26 -5.93 5.49 56.52 0.31 -5.62 16 13 N -0.67 -13.31 5.88 -100.83 -0.59 -13.90 16 14 C 0.09 1.46 1.60 -67.59 -0.11 1.35 16 15 C -0.10 -1.72 5.58 -26.65 -0.15 -1.87 16 16 C 0.06 0.76 5.30 -3.83 -0.02 0.74 16 17 N -0.53 -6.76 4.66 -234.66 -1.09 -7.85 16 18 C 0.09 0.92 5.24 -3.82 -0.02 0.90 16 19 C -0.15 -1.45 5.66 -90.62 -0.51 -1.97 16 20 C -0.17 -1.53 10.18 -26.69 -0.27 -1.81 16 21 C -0.19 -1.55 10.25 -26.70 -0.27 -1.82 16 22 C 0.06 0.76 5.46 -3.83 -0.02 0.74 16 23 C -0.12 -1.62 5.36 -26.65 -0.14 -1.76 16 24 H 0.04 0.76 7.89 -51.93 -0.41 0.35 16 25 H 0.04 0.71 6.95 -51.93 -0.36 0.35 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 1.21 8.05 -51.93 -0.42 0.80 16 28 H 0.06 1.40 4.91 -51.93 -0.25 1.15 16 29 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.33 6.12 7.58 -39.29 -0.30 5.82 16 31 H 0.03 0.56 6.20 -51.93 -0.32 0.24 16 32 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.07 1.30 7.80 -51.93 -0.41 0.89 16 34 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.96 6.16 -51.93 -0.32 0.64 16 36 H 0.03 0.35 8.12 -51.92 -0.42 -0.07 16 37 H 0.07 0.70 7.72 -51.93 -0.40 0.30 16 38 H 0.11 1.21 6.33 -51.93 -0.33 0.88 16 39 H 0.09 0.77 8.03 -51.93 -0.42 0.35 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.75 8.02 -51.92 -0.42 0.34 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 343.34 15.07 5.17 5.17 Total: -1.00 -29.43 343.34 -10.51 -39.94 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -8.53 Total: 5.62 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: -1.84 Total: -19.08 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: -0.91 Total: -48.43 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.39 Total: 16.78 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.43 -10.51 -39.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545168076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.050 kcal (2) G-P(sol) polarization free energy of solvation -29.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds