Wall clock time and date at job start Mon Mar 30 2020 00:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 110.27703 * 2 1 4 4 N 1.46905 * 109.47004 * 312.21146 * 3 2 1 5 5 C 1.46848 * 110.99915 * 183.54672 * 4 3 2 6 6 C 1.53036 * 109.52440 * 185.84290 * 5 4 3 7 7 C 1.53125 * 109.27461 * 300.81729 * 6 5 4 8 8 C 1.52994 * 109.52092 * 177.55628 * 7 6 5 9 9 C 1.50701 * 109.47056 * 175.00083 * 8 7 6 10 10 H 1.08001 * 119.99983 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00313 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00540 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99966 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.47342 * 270.00622 * 13 11 9 15 15 H 1.48506 * 109.46825 * 30.00371 * 13 11 9 16 16 H 1.48494 * 109.47457 * 150.00128 * 13 11 9 17 17 C 1.53120 * 109.15673 * 57.65425 * 7 6 5 18 18 C 1.46839 * 110.99887 * 307.75414 * 4 3 2 19 19 C 1.54602 * 110.39362 * 122.14503 * 2 1 3 20 20 C 1.54943 * 102.91842 * 97.00022 * 19 2 1 21 21 N 1.48526 * 103.22965 * 37.41848 * 20 19 2 22 22 C 1.47908 * 105.81996 * 320.79275 * 21 20 19 23 23 H 1.09000 * 109.47158 * 60.00076 * 1 2 3 24 24 H 1.08998 * 109.47587 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47366 * 299.99933 * 1 2 3 26 26 H 1.09001 * 109.47136 * 192.21292 * 3 2 1 27 27 H 1.09004 * 109.46945 * 72.21103 * 3 2 1 28 28 H 1.09004 * 109.46409 * 65.81920 * 5 4 3 29 29 H 1.09004 * 109.46032 * 305.85507 * 5 4 3 30 30 H 1.08997 * 109.50271 * 180.88374 * 6 5 4 31 31 H 1.08997 * 109.53450 * 60.77499 * 6 5 4 32 32 H 1.09002 * 109.52535 * 297.69131 * 7 6 5 33 33 H 1.09000 * 109.46833 * 55.00559 * 8 7 6 34 34 H 1.08996 * 109.47588 * 295.00157 * 8 7 6 35 35 H 0.96998 * 120.00594 * 180.02562 * 12 11 9 36 36 H 1.09001 * 109.50767 * 62.28979 * 17 7 6 37 37 H 1.09004 * 109.50027 * 182.40183 * 17 7 6 38 38 H 1.09000 * 109.46457 * 294.17534 * 18 4 3 39 39 H 1.09007 * 109.46240 * 54.14766 * 18 4 3 40 40 H 1.08992 * 110.72532 * 215.35746 * 19 2 1 41 41 H 1.08995 * 110.72123 * 338.64563 * 19 2 1 42 42 H 1.09003 * 110.66888 * 278.97874 * 20 19 2 43 43 H 1.09002 * 110.66347 * 155.85333 * 20 19 2 44 44 H 1.00894 * 111.00138 * 200.27384 * 21 20 19 45 45 H 1.09001 * 109.91014 * 265.97631 * 22 21 20 46 46 H 1.08993 * 109.91688 * 144.68767 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0602 1.4352 0.0000 4 7 1.3570 2.2170 -1.0259 5 6 1.8985 3.5792 -1.1125 6 6 1.0514 4.4056 -2.0828 7 6 1.0691 3.7406 -3.4619 8 6 0.1747 4.5286 -4.4210 9 6 0.2885 3.9468 -5.8065 10 1 0.9339 3.0994 -5.9850 11 6 -0.4313 4.4962 -6.8463 12 7 -0.3324 3.9881 -8.0552 13 14 -1.5481 5.9614 -6.5374 14 1 -2.9068 5.4813 -6.1787 15 1 -1.0002 6.7750 -5.4225 16 1 -1.6251 6.7927 -7.7655 17 6 0.5458 2.3072 -3.3354 18 6 1.4075 1.5416 -2.3287 19 6 2.0687 -0.7710 1.2270 20 6 2.3619 -2.1788 0.6500 21 7 2.8829 -1.8871 -0.7099 22 6 2.0645 -0.7672 -1.2236 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 3.1282 1.4279 -0.2174 27 1 1.8915 1.8848 0.9786 28 1 2.9269 3.5390 -1.4716 29 1 1.8763 4.0422 -0.1260 30 1 1.4629 5.4120 -2.1588 31 1 0.0258 4.4583 -1.7173 32 1 2.0893 3.7243 -3.8455 33 1 0.4905 5.5717 -4.4380 34 1 -0.8605 4.4677 -4.0853 35 1 -0.8384 4.3749 -8.7868 36 1 -0.4877 2.3262 -2.9894 37 1 0.5959 1.8144 -4.3064 38 1 2.4382 1.5110 -2.6822 39 1 1.0287 0.5247 -2.2257 40 1 2.9823 -0.3098 1.6017 41 1 1.3131 -0.8251 2.0107 42 1 1.4475 -2.7695 0.5933 43 1 3.1152 -2.6907 1.2490 44 1 2.8051 -2.6959 -1.3081 45 1 1.2324 -1.1546 -1.8115 46 1 2.6798 -0.1079 -1.8356 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563135524.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:13 Heat of formation + Delta-G solvation = -0.361018 kcal Electronic energy + Delta-G solvation = -21562.237482 eV Core-core repulsion = 18679.069904 eV Total energy + Delta-G solvation = -2883.167578 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.23614 -37.96588 -34.74465 -32.69956 -31.62318 -30.75957 -29.07119 -28.57101 -26.37692 -25.18992 -23.18308 -22.33243 -21.48237 -20.33617 -19.12670 -18.93098 -16.71240 -16.50081 -15.65125 -15.42958 -14.67001 -14.43148 -14.22738 -14.18986 -13.53503 -13.23424 -12.88859 -12.74721 -12.61675 -12.49279 -12.26197 -11.97121 -11.89757 -11.81254 -11.36625 -11.35981 -10.95360 -10.77399 -10.72495 -10.57156 -10.54001 -10.47514 -10.05646 -9.73139 -9.52507 -9.16669 -8.95631 -8.66690 -8.48889 -8.04187 -5.99773 -3.96464 3.33809 3.41143 3.45476 4.05929 4.11387 4.45216 4.49550 4.52111 4.80434 5.05184 5.16056 5.22655 5.31999 5.33769 5.38267 5.44455 5.47871 5.58282 5.62806 5.67971 5.72603 5.73730 5.78511 5.87933 5.89805 5.98166 6.06289 6.11770 6.15312 6.21899 6.36414 6.39208 6.52619 6.61727 6.64447 6.89445 6.98956 7.07466 7.13653 7.32607 7.34433 7.42449 7.54660 7.86020 8.59752 9.05599 9.63751 11.13704 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.032463 B = 0.004254 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.322869 B = 6580.323128 C = 6996.103863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.068 4.068 3 C 0.070 3.930 4 N -0.532 5.532 5 C 0.060 3.940 6 C -0.114 4.114 7 C -0.073 4.073 8 C -0.009 4.009 9 C -0.513 4.513 10 H 0.072 0.928 11 C 0.065 3.935 12 N -0.906 5.906 13 Si 0.878 3.122 14 H -0.278 1.278 15 H -0.266 1.266 16 H -0.289 1.289 17 C -0.102 4.102 18 C 0.037 3.963 19 C -0.114 4.114 20 C 0.037 3.963 21 N -0.676 5.676 22 C 0.036 3.964 23 H 0.076 0.924 24 H 0.042 0.958 25 H 0.056 0.944 26 H 0.033 0.967 27 H 0.071 0.929 28 H 0.028 0.972 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.013 0.987 34 H 0.011 0.989 35 H 0.261 0.739 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.028 0.972 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.039 0.961 43 H 0.077 0.923 44 H 0.336 0.664 45 H 0.047 0.953 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.980 -9.050 19.098 21.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.069 4.069 3 C -0.058 4.058 4 N -0.257 5.257 5 C -0.068 4.068 6 C -0.151 4.151 7 C -0.091 4.091 8 C -0.046 4.046 9 C -0.551 4.551 10 H 0.090 0.910 11 C -0.136 4.136 12 N -0.546 5.546 13 Si 0.706 3.294 14 H -0.204 1.204 15 H -0.191 1.191 16 H -0.216 1.216 17 C -0.140 4.140 18 C -0.090 4.090 19 C -0.152 4.152 20 C -0.092 4.092 21 N -0.305 5.305 22 C -0.092 4.092 23 H 0.095 0.905 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.029 0.971 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.047 0.953 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.058 0.942 43 H 0.096 0.904 44 H 0.151 0.849 45 H 0.065 0.935 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.017 -8.591 19.244 21.454 hybrid contribution -0.629 0.281 -0.483 0.841 sum 3.388 -8.310 18.761 20.797 Atomic orbital electron populations 1.21854 0.93078 1.00447 1.03590 1.21429 0.96513 0.94542 0.94452 1.22118 0.95435 0.92211 0.96057 1.62027 1.54918 1.02177 1.06580 1.22059 0.96313 0.89089 0.99336 1.21711 1.00021 0.97754 0.95654 1.21047 0.99904 0.94835 0.93358 1.19607 0.94537 0.95356 0.95091 1.21163 1.26679 1.16165 0.91101 0.90992 1.25027 0.96615 0.96855 0.95066 1.69913 1.42566 1.41765 1.00331 0.86804 0.81454 0.83488 0.77688 1.20386 1.19062 1.21563 1.21583 0.98738 0.95784 0.97849 1.22805 0.98551 0.98824 0.88806 1.22578 1.01057 0.94762 0.96836 1.23007 0.98106 0.96879 0.91202 1.63157 1.53811 1.09872 1.03663 1.23381 0.95727 0.93461 0.96625 0.90517 0.93895 0.92530 0.94857 0.91052 0.95357 0.91732 0.92253 0.91691 0.92507 0.96852 0.97055 0.92878 0.92076 0.90577 0.95345 0.89725 0.90855 0.90956 0.94250 0.90413 0.84922 0.93469 0.89385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 7.74 37.15 0.29 -1.14 16 2 C -0.07 -0.73 0.64 -153.15 -0.10 -0.82 16 3 C 0.07 0.82 4.18 -3.82 -0.02 0.81 16 4 N -0.53 -7.36 3.92 -234.67 -0.92 -8.28 16 5 C 0.06 0.85 5.46 -3.83 -0.02 0.83 16 6 C -0.11 -1.87 5.38 -26.65 -0.14 -2.02 16 7 C -0.07 -1.44 2.20 -90.50 -0.20 -1.64 16 8 C -0.01 -0.21 3.52 -27.89 -0.10 -0.30 16 9 C -0.51 -14.51 9.00 -34.44 -0.31 -14.82 16 10 H 0.07 2.18 7.32 -52.49 -0.38 1.79 16 11 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 12 N -0.91 -28.07 13.96 55.43 0.77 -27.30 16 13 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 16 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 17 C -0.10 -1.88 5.15 -26.65 -0.14 -2.01 16 18 C 0.04 0.56 3.30 -3.84 -0.01 0.55 16 19 C -0.11 -1.04 6.16 -24.86 -0.15 -1.19 16 20 C 0.04 0.33 7.55 -1.90 -0.01 0.32 16 21 N -0.68 -6.99 7.51 -110.08 -0.83 -7.82 16 22 C 0.04 0.41 4.85 -2.75 -0.01 0.40 16 23 H 0.08 0.97 6.01 -51.93 -0.31 0.66 16 24 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.03 0.42 8.00 -51.93 -0.42 0.00 16 27 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 34 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.08 1.56 7.05 -51.93 -0.37 1.19 16 38 H 0.03 0.45 7.29 -51.93 -0.38 0.07 16 39 H 0.08 1.17 3.19 -51.93 -0.17 1.00 16 40 H 0.07 0.68 7.86 -51.93 -0.41 0.27 16 41 H 0.07 0.58 7.86 -51.93 -0.41 0.17 16 42 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.34 3.01 8.92 -39.29 -0.35 2.66 16 45 H 0.05 0.53 6.91 -51.93 -0.36 0.18 16 46 H 0.09 1.13 5.24 -51.93 -0.27 0.86 16 LS Contribution 332.45 15.07 5.01 5.01 Total: -1.00 -29.94 332.45 -10.06 -40.00 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -8.40 Total: 0.32 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -1.03 Total: -19.25 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: -0.97 Total: -43.40 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.94 -10.06 -40.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563135524.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.640 kcal (2) G-P(sol) polarization free energy of solvation -29.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds