Wall clock time and date at job start Mon Mar 30 2020 00:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99783 * 2 1 4 4 H 1.48507 * 109.47279 * 239.99790 * 3 2 1 5 5 H 1.48496 * 109.47478 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47462 * 120.00322 * 3 2 1 7 7 C 1.37876 * 120.00443 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99851 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99886 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.53124 * 109.52034 * 175.00355 * 10 9 7 12 12 C 1.53039 * 109.27778 * 177.55597 * 11 10 9 13 13 N 1.46843 * 109.52233 * 300.82229 * 12 11 10 14 14 C 1.46904 * 111.00069 * 185.83950 * 13 12 11 15 15 C 1.53000 * 109.47135 * 169.99460 * 14 13 12 16 16 C 1.53003 * 109.46904 * 179.97438 * 15 14 13 17 17 H 1.09003 * 110.76099 * 51.80378 * 16 15 14 18 18 C 1.55138 * 110.70598 * 175.00016 * 16 15 14 19 19 C 1.54908 * 101.68619 * 154.02265 * 18 16 15 20 20 N 1.47887 * 104.77420 * 322.97931 * 19 18 16 21 21 C 1.47444 * 108.58784 * 24.04325 * 20 19 18 22 22 C 1.46846 * 111.20374 * 61.73875 * 13 12 11 23 23 C 1.53034 * 109.52270 * 298.26049 * 22 13 12 24 24 H 0.97003 * 120.00072 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46688 * 60.00167 * 9 7 2 26 26 H 1.08998 * 109.46776 * 300.00692 * 9 7 2 27 27 H 1.08992 * 109.57758 * 54.84204 * 10 9 7 28 28 H 1.09001 * 109.50092 * 57.61612 * 11 10 9 29 29 H 1.09000 * 109.49929 * 297.49763 * 11 10 9 30 30 H 1.08993 * 109.46268 * 180.80291 * 12 11 10 31 31 H 1.09006 * 109.45968 * 60.83292 * 12 11 10 32 32 H 1.09006 * 109.46876 * 49.99613 * 14 13 12 33 33 H 1.08994 * 109.46922 * 289.99682 * 14 13 12 34 34 H 1.08999 * 109.46928 * 60.00648 * 15 14 13 35 35 H 1.08994 * 109.47397 * 299.99931 * 15 14 13 36 36 H 1.09002 * 110.99302 * 272.13266 * 18 16 15 37 37 H 1.08995 * 110.99003 * 35.91153 * 18 16 15 38 38 H 1.08993 * 110.37866 * 81.77867 * 19 18 16 39 39 H 1.09005 * 110.37455 * 204.12444 * 19 18 16 40 40 H 1.00899 * 110.97002 * 261.78382 * 20 19 18 41 41 H 1.08998 * 109.89066 * 239.63908 * 21 20 19 42 42 H 1.08993 * 110.02675 * 118.51798 * 21 20 19 43 43 H 1.09000 * 109.45777 * 58.27640 * 22 13 12 44 44 H 1.09000 * 109.46440 * 178.24340 * 22 13 12 45 45 H 1.09001 * 109.50367 * 299.23115 * 23 22 13 46 46 H 1.09004 * 109.53607 * 179.13649 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4852 -4.9852 0.1252 12 6 2.4794 -6.1470 0.0633 13 7 3.2099 -6.1005 -1.2097 14 6 4.0739 -7.2784 -1.3643 15 6 4.6226 -7.3247 -2.7918 16 6 5.5230 -8.5513 -2.9525 17 1 5.0091 -9.4539 -2.6219 18 6 5.9950 -8.6963 -4.4232 19 6 7.3245 -9.4725 -4.2510 20 7 7.9229 -8.9258 -3.0141 21 6 6.8455 -8.3624 -2.1799 22 6 3.9852 -4.8594 -1.3321 23 6 3.0359 -3.6593 -1.3119 24 1 -0.4850 0.8401 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6247 -2.5570 0.8896 27 1 2.9322 -3.5553 0.8390 28 1 0.7708 -5.0736 -0.6933 29 1 0.9543 -5.0108 1.0768 30 1 1.9399 -7.0911 0.1382 31 1 3.1851 -6.0655 0.8901 32 1 3.4958 -8.1814 -1.1678 33 1 4.9022 -7.2165 -0.6585 34 1 5.2007 -6.4218 -2.9883 35 1 3.7943 -7.3867 -3.4976 36 1 5.2788 -9.2735 -5.0081 37 1 6.1686 -7.7200 -4.8756 38 1 7.1295 -10.5390 -4.1386 39 1 7.9814 -9.2937 -5.1023 40 1 8.6180 -8.2263 -3.2278 41 1 7.0260 -7.3013 -2.0079 42 1 6.7968 -8.8894 -1.2271 43 1 4.6838 -4.7841 -0.4989 44 1 4.5393 -4.8684 -2.2708 45 1 2.3459 -3.7268 -2.1530 46 1 3.6124 -2.7372 -1.3873 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571443452.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:28 Heat of formation + Delta-G solvation = -26.385481 kcal Electronic energy + Delta-G solvation = -20592.166122 eV Core-core repulsion = 17707.870039 eV Total energy + Delta-G solvation = -2884.296083 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.35469 -38.42845 -34.99749 -32.93324 -31.70865 -30.36116 -29.63674 -28.28423 -26.41052 -23.98111 -22.88027 -22.20819 -21.48243 -20.55584 -19.96490 -18.89294 -16.76843 -16.22808 -16.18960 -15.43551 -14.84448 -14.47688 -14.31310 -13.92924 -13.65724 -13.43584 -13.23893 -12.87654 -12.74936 -12.40292 -12.19046 -11.91001 -11.73804 -11.66962 -11.37408 -11.19841 -10.91966 -10.84025 -10.79521 -10.70831 -10.60599 -10.48004 -10.22212 -9.91388 -9.49635 -9.01539 -8.85829 -8.78243 -8.30771 -8.05418 -5.95664 -3.97161 3.34453 3.39131 3.41225 3.89213 4.09181 4.36107 4.46124 4.48591 4.74535 4.93367 5.05887 5.19268 5.22960 5.30329 5.33972 5.39487 5.45396 5.51191 5.55292 5.57401 5.63100 5.68268 5.74084 5.81897 5.88916 5.92171 5.99865 6.09843 6.13056 6.20997 6.29381 6.48300 6.52539 6.61032 6.70430 7.00968 7.04766 7.13337 7.22508 7.38710 7.42597 7.72530 7.89729 8.05308 8.48416 9.09271 9.66089 11.15678 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.030828 B = 0.003306 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.033035 B = 8467.125117 C = 8998.844683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.028 3.972 10 C -0.081 4.081 11 C -0.112 4.112 12 C 0.060 3.940 13 N -0.537 5.537 14 C 0.056 3.944 15 C -0.106 4.106 16 C -0.106 4.106 17 H 0.080 0.920 18 C -0.150 4.150 19 C 0.046 3.954 20 N -0.689 5.689 21 C 0.050 3.950 22 C 0.054 3.946 23 C -0.100 4.100 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.014 0.986 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.026 0.974 32 H 0.069 0.931 33 H 0.029 0.971 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.338 0.662 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.025 0.975 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.641 -18.055 -6.401 22.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.553 4.553 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.100 4.100 11 C -0.150 4.150 12 C -0.068 4.068 13 N -0.262 5.262 14 C -0.072 4.072 15 C -0.144 4.144 16 C -0.126 4.126 17 H 0.098 0.902 18 C -0.189 4.189 19 C -0.083 4.083 20 N -0.317 5.317 21 C -0.079 4.079 22 C -0.073 4.073 23 C -0.138 4.138 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.032 0.968 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.153 0.847 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.043 0.957 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.193 -18.564 -6.413 22.606 hybrid contribution 0.787 1.818 0.215 1.993 sum 11.981 -16.746 -6.197 21.503 Atomic orbital electron populations 1.69954 1.06022 1.26555 1.51075 1.25016 0.94801 0.99109 0.95558 0.86716 0.79620 0.83454 0.78539 1.20290 1.21360 1.20360 1.21224 0.92868 0.91074 1.50149 0.92798 1.19109 0.93620 0.91035 0.97089 1.21231 0.97871 0.94782 0.96103 1.21692 0.97550 0.94291 1.01441 1.22091 0.96271 0.99335 0.89085 1.61942 1.28012 1.01799 1.34458 1.22087 0.95145 0.93902 0.96083 1.21605 0.98884 0.96604 0.97281 1.22405 0.96024 0.99206 0.94965 0.90172 1.23193 0.98050 1.00924 0.96738 1.22881 0.94342 0.99693 0.91388 1.61721 1.14210 1.38479 1.17296 1.22738 0.89417 0.98565 0.97224 1.22239 0.95328 0.90133 0.99619 1.21546 0.97858 0.95501 0.98849 0.93044 0.96523 0.96804 0.93130 0.91627 0.92191 0.91743 0.95528 0.91257 0.95294 0.91776 0.90845 0.90652 0.91243 0.90610 0.91591 0.84716 0.92719 0.90876 0.95665 0.91582 0.91919 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.51 -14.47 8.44 -34.44 -0.29 -14.76 16 8 H 0.05 1.47 7.08 -52.49 -0.37 1.10 16 9 C 0.03 0.74 4.45 -27.88 -0.12 0.61 16 10 C -0.08 -1.68 2.20 -90.50 -0.20 -1.88 16 11 C -0.11 -1.98 5.38 -26.65 -0.14 -2.12 16 12 C 0.06 0.89 5.46 -3.83 -0.02 0.87 16 13 N -0.54 -7.82 4.66 -234.67 -1.09 -8.92 16 14 C 0.06 0.65 4.85 -3.82 -0.02 0.63 16 15 C -0.11 -1.07 4.54 -26.73 -0.12 -1.19 16 16 C -0.11 -0.92 2.93 -88.80 -0.26 -1.18 16 17 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 18 C -0.15 -1.16 6.52 -24.59 -0.16 -1.32 16 19 C 0.05 0.35 7.58 -2.27 -0.02 0.33 16 20 N -0.69 -5.98 7.39 -110.76 -0.82 -6.80 16 21 C 0.05 0.45 6.57 -2.83 -0.02 0.43 16 22 C 0.05 0.84 5.29 -3.84 -0.02 0.82 16 23 C -0.10 -1.90 5.15 -26.65 -0.14 -2.03 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.85 8.01 -51.93 -0.42 0.44 16 31 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.76 7.99 -51.93 -0.41 0.34 16 33 H 0.03 0.34 7.66 -51.93 -0.40 -0.06 16 34 H 0.06 0.69 6.22 -51.93 -0.32 0.37 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.56 8.05 -51.93 -0.42 0.14 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.34 2.53 8.91 -39.29 -0.35 2.18 16 41 H 0.05 0.50 7.68 -51.93 -0.40 0.10 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.93 6.21 -51.93 -0.32 0.61 16 45 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.07 1.45 7.05 -51.93 -0.37 1.08 16 LS Contribution 348.18 15.07 5.25 5.25 Total: -1.00 -29.77 348.18 -11.41 -41.18 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -8.83 Total: -1.75 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -1.63 Total: -19.28 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: -1.18 Total: -42.13 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.77 -11.41 -41.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571443452.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.791 kcal (2) G-P(sol) polarization free energy of solvation -29.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds