Wall clock time and date at job start Mon Mar 30 2020 00:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99783 * 2 1 4 4 H 1.48507 * 109.47279 * 239.99790 * 3 2 1 5 5 H 1.48496 * 109.47478 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47462 * 120.00322 * 3 2 1 7 7 C 1.37876 * 120.00443 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99851 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99886 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.53124 * 109.52034 * 175.00355 * 10 9 7 12 12 C 1.53039 * 109.27778 * 177.55597 * 11 10 9 13 13 N 1.46843 * 109.52233 * 300.82229 * 12 11 10 14 14 C 1.46904 * 111.00069 * 185.83950 * 13 12 11 15 15 C 1.53000 * 109.47135 * 169.99460 * 14 13 12 16 16 C 1.53003 * 109.46904 * 179.97438 * 15 14 13 17 17 H 1.09003 * 110.76099 * 51.80378 * 16 15 14 18 18 C 1.55138 * 110.70598 * 175.00016 * 16 15 14 19 19 C 1.54908 * 101.68619 * 154.02265 * 18 16 15 20 20 N 1.47887 * 104.77420 * 322.97931 * 19 18 16 21 21 C 1.47444 * 108.58784 * 24.04325 * 20 19 18 22 22 C 1.46846 * 111.20374 * 61.73875 * 13 12 11 23 23 C 1.53034 * 109.52270 * 298.26049 * 22 13 12 24 24 H 0.97003 * 120.00072 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46688 * 60.00167 * 9 7 2 26 26 H 1.08998 * 109.46776 * 300.00692 * 9 7 2 27 27 H 1.08992 * 109.57758 * 54.84204 * 10 9 7 28 28 H 1.09001 * 109.50092 * 57.61612 * 11 10 9 29 29 H 1.09000 * 109.49929 * 297.49763 * 11 10 9 30 30 H 1.08993 * 109.46268 * 180.80291 * 12 11 10 31 31 H 1.09006 * 109.45968 * 60.83292 * 12 11 10 32 32 H 1.09006 * 109.46876 * 49.99613 * 14 13 12 33 33 H 1.08994 * 109.46922 * 289.99682 * 14 13 12 34 34 H 1.08999 * 109.46928 * 60.00648 * 15 14 13 35 35 H 1.08994 * 109.47397 * 299.99931 * 15 14 13 36 36 H 1.09002 * 110.99302 * 272.13266 * 18 16 15 37 37 H 1.08995 * 110.99003 * 35.91153 * 18 16 15 38 38 H 1.08993 * 110.37866 * 81.77867 * 19 18 16 39 39 H 1.09005 * 110.37455 * 204.12444 * 19 18 16 40 40 H 1.00899 * 110.97002 * 261.78382 * 20 19 18 41 41 H 1.08998 * 109.89066 * 239.63908 * 21 20 19 42 42 H 1.08993 * 110.02675 * 118.51798 * 21 20 19 43 43 H 1.09000 * 109.45777 * 58.27640 * 22 13 12 44 44 H 1.09000 * 109.46440 * 178.24340 * 22 13 12 45 45 H 1.09001 * 109.50367 * 299.23115 * 23 22 13 46 46 H 1.09004 * 109.53607 * 179.13649 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4852 -4.9852 0.1252 12 6 2.4794 -6.1470 0.0633 13 7 3.2099 -6.1005 -1.2097 14 6 4.0739 -7.2784 -1.3643 15 6 4.6226 -7.3247 -2.7918 16 6 5.5230 -8.5513 -2.9525 17 1 5.0091 -9.4539 -2.6219 18 6 5.9950 -8.6963 -4.4232 19 6 7.3245 -9.4725 -4.2510 20 7 7.9229 -8.9258 -3.0141 21 6 6.8455 -8.3624 -2.1799 22 6 3.9852 -4.8594 -1.3321 23 6 3.0359 -3.6593 -1.3119 24 1 -0.4850 0.8401 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6247 -2.5570 0.8896 27 1 2.9322 -3.5553 0.8390 28 1 0.7708 -5.0736 -0.6933 29 1 0.9543 -5.0108 1.0768 30 1 1.9399 -7.0911 0.1382 31 1 3.1851 -6.0655 0.8901 32 1 3.4958 -8.1814 -1.1678 33 1 4.9022 -7.2165 -0.6585 34 1 5.2007 -6.4218 -2.9883 35 1 3.7943 -7.3867 -3.4976 36 1 5.2788 -9.2735 -5.0081 37 1 6.1686 -7.7200 -4.8756 38 1 7.1295 -10.5390 -4.1386 39 1 7.9814 -9.2937 -5.1023 40 1 8.6180 -8.2263 -3.2278 41 1 7.0260 -7.3013 -2.0079 42 1 6.7968 -8.8894 -1.2271 43 1 4.6838 -4.7841 -0.4989 44 1 4.5393 -4.8684 -2.2708 45 1 2.3459 -3.7268 -2.1530 46 1 3.6124 -2.7372 -1.3873 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571443452.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:27 Heat of formation + Delta-G solvation = -45.356674 kcal Electronic energy + Delta-G solvation = -20592.988775 eV Core-core repulsion = 17707.870039 eV Total energy + Delta-G solvation = -2885.118736 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.35198 -39.42720 -36.45536 -34.63895 -33.04914 -31.70838 -30.42982 -29.70365 -27.65995 -25.60924 -24.22948 -23.31052 -22.42868 -21.81158 -20.74440 -20.44641 -18.42904 -17.48621 -16.95344 -16.66065 -16.37879 -15.94156 -15.38438 -15.10641 -14.76496 -14.60152 -14.55727 -14.12095 -13.92703 -13.70977 -13.30484 -13.21878 -13.03911 -12.88812 -12.67088 -12.53972 -12.42227 -12.18511 -12.06376 -11.98546 -11.70632 -11.63844 -11.51529 -11.48671 -11.22475 -10.83160 -10.68744 -10.51582 -9.42038 -9.20020 -8.17565 -6.27492 1.38897 1.41775 1.49509 2.41366 2.94630 3.15314 3.34415 3.68532 3.75616 3.99945 4.00223 4.07494 4.13757 4.23585 4.37819 4.40786 4.46290 4.55129 4.55659 4.65114 4.67749 4.72494 4.76502 4.78966 4.86659 4.94594 4.96573 5.00516 5.07368 5.14227 5.17178 5.20591 5.30188 5.38259 5.40460 5.45181 5.46285 5.57332 5.80746 5.89011 5.90516 6.19375 6.25945 6.31458 6.46648 6.88516 7.40845 8.94244 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.030828 B = 0.003306 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.033035 B = 8467.125117 C = 8998.844683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.961 3.039 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.531 4.531 8 H 0.060 0.940 9 C 0.034 3.966 10 C -0.075 4.075 11 C -0.107 4.107 12 C 0.067 3.933 13 N -0.548 5.548 14 C 0.059 3.941 15 C -0.097 4.097 16 C -0.101 4.101 17 H 0.082 0.918 18 C -0.147 4.147 19 C 0.046 3.954 20 N -0.700 5.700 21 C 0.051 3.949 22 C 0.066 3.934 23 C -0.094 4.094 24 H 0.262 0.738 25 H -0.013 1.013 26 H -0.015 1.015 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.031 0.969 32 H 0.081 0.919 33 H 0.034 0.966 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.343 0.657 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.028 0.972 44 H 0.083 0.917 45 H 0.048 0.952 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.489 -19.072 -6.850 24.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.785 3.215 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.569 4.569 8 H 0.078 0.922 9 C -0.003 4.003 10 C -0.094 4.094 11 C -0.145 4.145 12 C -0.061 4.061 13 N -0.273 5.273 14 C -0.069 4.069 15 C -0.135 4.135 16 C -0.121 4.121 17 H 0.101 0.899 18 C -0.186 4.186 19 C -0.083 4.083 20 N -0.328 5.328 21 C -0.079 4.079 22 C -0.062 4.062 23 C -0.132 4.132 24 H 0.071 0.929 25 H 0.006 0.994 26 H 0.003 0.997 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.049 0.951 32 H 0.099 0.901 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.159 0.841 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.046 0.954 44 H 0.102 0.898 45 H 0.067 0.933 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.059 -19.601 -6.865 24.533 hybrid contribution 0.172 2.112 0.354 2.148 sum 13.231 -17.489 -6.511 22.876 Atomic orbital electron populations 1.70099 1.07819 1.27645 1.52096 1.25968 0.95708 1.03257 0.95048 0.85567 0.78320 0.78407 0.79167 1.19102 1.20992 1.19270 1.21627 0.93362 0.92156 1.49765 0.92191 1.18998 0.93992 0.93068 0.94206 1.21085 0.96900 0.94372 0.96994 1.21603 0.97879 0.93930 1.01117 1.22012 0.95808 0.98770 0.89522 1.61916 1.28758 1.02353 1.34246 1.22150 0.94948 0.92785 0.97002 1.21512 0.98736 0.97082 0.96204 1.22338 0.95574 0.98482 0.95671 0.89916 1.23173 0.98323 1.00988 0.96112 1.22913 0.94419 0.99521 0.91402 1.61712 1.14396 1.38810 1.17913 1.22697 0.89690 0.98303 0.97165 1.22061 0.94332 0.89104 1.00702 1.21421 0.97867 0.96844 0.97106 0.92919 0.99435 0.99673 0.93544 0.92689 0.92064 0.89372 0.95078 0.90085 0.94822 0.92330 0.91452 0.89912 0.91474 0.90668 0.90315 0.84067 0.93015 0.91382 0.95400 0.89839 0.93349 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.11 13.29 21.45 0.28 -57.82 16 2 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 3 Si 0.96 44.83 29.54 68.60 2.03 46.85 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.53 -30.49 8.44 25.60 0.22 -30.27 16 8 H 0.06 3.29 7.08 -2.91 -0.02 3.27 16 9 C 0.03 1.86 4.45 29.85 0.13 1.99 16 10 C -0.07 -3.15 2.20 -10.71 -0.02 -3.17 16 11 C -0.11 -3.78 5.38 30.65 0.16 -3.62 16 12 C 0.07 1.85 5.46 86.33 0.47 2.32 16 13 N -0.55 -14.85 4.66 -896.37 -4.17 -19.02 16 14 C 0.06 1.20 4.85 86.30 0.42 1.62 16 15 C -0.10 -1.76 4.54 30.60 0.14 -1.62 16 16 C -0.10 -1.52 2.93 -9.61 -0.03 -1.55 16 17 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 18 C -0.15 -1.95 6.52 31.98 0.21 -1.75 16 19 C 0.05 0.60 7.58 86.77 0.66 1.26 16 20 N -0.70 -10.80 7.39 -504.33 -3.73 -14.53 16 21 C 0.05 0.81 6.57 86.65 0.57 1.38 16 22 C 0.07 1.94 5.29 86.33 0.46 2.40 16 23 C -0.09 -3.60 5.15 30.65 0.16 -3.45 16 24 H 0.26 15.33 8.31 -92.71 -0.77 14.55 16 25 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 26 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 27 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.09 2.08 8.01 -2.39 -0.02 2.06 16 31 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.08 1.51 7.99 -2.38 -0.02 1.49 16 33 H 0.03 0.68 7.66 -2.39 -0.02 0.66 16 34 H 0.06 1.13 6.22 -2.39 -0.01 1.12 16 35 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 37 H 0.07 0.93 8.05 -2.39 -0.02 0.91 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.34 4.53 8.91 -89.69 -0.80 3.73 16 41 H 0.05 0.85 7.68 -2.39 -0.02 0.83 16 42 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.08 2.19 6.21 -2.39 -0.01 2.18 16 45 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.05 2.26 7.05 -2.39 -0.02 2.24 16 Total: -1.00 -64.59 348.18 -1.47 -66.06 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.12 Total: 12.61 kcal Atomic # 6 Polarization: -38.15 SS G_CDS: 4.00 Total: -34.14 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -7.62 Total: -91.37 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -64.59 -1.47 -66.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571443452.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.701 kcal (2) G-P(sol) polarization free energy of solvation -64.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds