Wall clock time and date at job start Mon Mar 30 2020 00:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00434 * 2 1 4 4 H 1.48494 * 109.47469 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46721 * 299.99498 * 3 2 1 6 6 H 1.48499 * 109.47168 * 59.99410 * 3 2 1 7 7 C 1.37882 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00012 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99721 * 0.02562 * 7 2 1 10 10 N 1.46894 * 109.46848 * 179.97438 * 9 7 2 11 11 C 1.46897 * 110.99894 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.47157 * 185.26702 * 11 10 9 13 13 H 1.09000 * 110.42299 * 294.22726 * 12 11 10 14 14 C 1.54906 * 110.37462 * 171.91044 * 12 11 10 15 15 C 1.55400 * 101.74271 * 204.19130 * 14 12 11 16 16 C 1.54319 * 102.89745 * 35.48042 * 15 14 12 17 17 N 1.47444 * 107.37308 * 337.89737 * 16 15 14 18 18 C 1.46903 * 110.99683 * 236.66366 * 17 16 15 19 19 C 1.52998 * 109.47381 * 58.76109 * 18 17 16 20 20 C 1.52996 * 109.47295 * 179.97438 * 19 18 17 21 21 C 1.53002 * 109.46934 * 60.00390 * 20 19 18 22 22 C 1.53003 * 109.46858 * 299.99566 * 21 20 19 23 23 C 1.53002 * 109.47081 * 298.76356 * 18 17 16 24 24 H 0.96998 * 119.99478 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47245 * 59.99272 * 9 7 2 26 26 H 1.08998 * 109.46649 * 299.99111 * 9 7 2 27 27 H 1.00906 * 111.00259 * 303.95135 * 10 9 7 28 28 H 1.08997 * 109.47817 * 65.26615 * 11 10 9 29 29 H 1.09001 * 109.47158 * 305.25964 * 11 10 9 30 30 H 1.09002 * 110.99064 * 322.19241 * 14 12 11 31 31 H 1.08996 * 110.98808 * 85.97186 * 14 12 11 32 32 H 1.08995 * 110.67763 * 277.17539 * 15 14 12 33 33 H 1.08998 * 110.84604 * 153.85932 * 15 14 12 34 34 H 1.08996 * 109.88439 * 218.40775 * 16 15 14 35 35 H 1.09006 * 109.88571 * 97.38680 * 16 15 14 36 36 H 1.08995 * 109.46967 * 178.76260 * 18 17 16 37 37 H 1.09004 * 109.47321 * 300.00312 * 19 18 17 38 38 H 1.09001 * 109.47014 * 59.99481 * 19 18 17 39 39 H 1.08995 * 109.47200 * 300.00241 * 20 19 18 40 40 H 1.09007 * 109.47323 * 179.97438 * 20 19 18 41 41 H 1.09002 * 109.47178 * 179.97438 * 21 20 19 42 42 H 1.09000 * 109.47648 * 59.99574 * 21 20 19 43 43 H 1.08995 * 109.47448 * 300.00254 * 22 21 20 44 44 H 1.09006 * 109.47061 * 179.97438 * 22 21 20 45 45 H 1.09007 * 109.46573 * 299.99991 * 23 18 17 46 46 H 1.08995 * 109.47298 * 60.00107 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 1.5052 -4.9070 -0.0001 12 6 2.5247 -6.0402 0.1324 13 1 3.1643 -6.0814 -0.7493 14 6 1.8018 -7.3948 0.3379 15 6 2.8962 -8.2314 1.0570 16 6 3.6049 -7.1841 1.9415 17 7 3.3403 -5.8587 1.3520 18 6 4.5951 -5.1585 1.0468 19 6 5.4248 -5.9991 0.0741 20 6 6.7313 -5.2695 -0.2443 21 6 7.5230 -5.0542 1.0472 22 6 6.6934 -4.2135 2.0198 23 6 5.3866 -4.9437 2.3384 24 1 -0.4849 0.8401 -0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 2.8404 -3.5488 -0.7809 28 1 0.9543 -5.0213 -0.9336 29 1 0.8102 -4.9438 0.8388 30 1 0.9237 -7.2764 0.9728 31 1 1.5319 -7.8424 -0.6186 32 1 3.5910 -8.6589 0.3341 33 1 2.4469 -9.0128 1.6699 34 1 4.6777 -7.3760 1.9561 35 1 3.2071 -7.2250 2.9555 36 1 4.3713 -4.1931 0.5930 37 1 5.6486 -6.9646 0.5279 38 1 4.8609 -6.1522 -0.8460 39 1 6.5071 -4.3042 -0.6982 40 1 7.3226 -5.8686 -0.9369 41 1 8.4541 -4.5348 0.8203 42 1 7.7472 -6.0195 1.5012 43 1 6.4692 -3.2483 1.5659 44 1 7.2573 -4.0605 2.9400 45 1 4.7955 -4.3448 3.0313 46 1 5.6104 -5.9091 2.7922 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572357154.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:41 Heat of formation + Delta-G solvation = -14.558289 kcal Electronic energy + Delta-G solvation = -21709.071243 eV Core-core repulsion = 18825.288025 eV Total energy + Delta-G solvation = -2883.783218 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.96493 -37.04850 -34.89893 -32.40598 -31.95800 -30.62873 -29.59771 -27.74485 -26.41213 -23.75968 -22.63071 -22.18183 -21.21967 -20.75922 -19.75386 -18.76779 -16.49705 -16.31838 -15.50085 -14.74821 -14.54715 -14.34704 -14.11679 -13.91044 -13.73828 -13.32299 -13.13934 -12.82008 -12.30929 -12.21077 -12.02478 -11.91435 -11.47528 -11.25866 -11.12578 -11.00894 -10.96117 -10.91693 -10.75866 -10.61925 -10.45859 -10.37891 -10.26973 -10.07917 -9.79971 -9.76313 -9.08075 -8.41753 -7.76919 -7.09280 -5.97249 -3.98241 3.34158 3.41350 3.46230 4.22508 4.47565 4.74010 4.77421 4.90335 4.92452 5.01230 5.14393 5.36174 5.38638 5.39350 5.44112 5.45706 5.59789 5.65447 5.67748 5.73334 5.74938 5.86898 5.88520 5.91256 5.98579 6.03842 6.13499 6.16721 6.21589 6.24620 6.26370 6.32602 6.39707 6.42620 6.56615 6.67065 6.81685 7.33501 7.49914 7.52081 7.59796 7.86548 8.22253 8.50354 8.72420 9.11617 9.66267 11.14052 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.016563 B = 0.005841 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.159714 B = 4792.635285 C = 6027.021316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.507 4.507 8 H 0.061 0.939 9 C 0.195 3.805 10 N -0.676 5.676 11 C 0.076 3.924 12 C 0.074 3.926 13 H 0.053 0.947 14 C -0.125 4.125 15 C -0.141 4.141 16 C 0.034 3.966 17 N -0.496 5.496 18 C 0.083 3.917 19 C -0.153 4.153 20 C -0.115 4.115 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.107 4.107 24 H 0.259 0.741 25 H -0.018 1.018 26 H 0.028 0.972 27 H 0.320 0.680 28 H 0.015 0.985 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.111 0.889 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.849 -15.706 1.278 19.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.305 5.305 11 C -0.055 4.055 12 C -0.034 4.034 13 H 0.070 0.930 14 C -0.163 4.163 15 C -0.179 4.179 16 C -0.094 4.094 17 N -0.218 5.218 18 C -0.026 4.026 19 C -0.192 4.192 20 C -0.153 4.153 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.145 4.145 24 H 0.069 0.931 25 H 0.000 1.000 26 H 0.046 0.954 27 H 0.135 0.865 28 H 0.033 0.967 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.129 0.871 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.483 -15.246 2.345 18.650 hybrid contribution 0.460 0.360 -1.508 1.617 sum 10.944 -14.885 0.837 18.494 Atomic orbital electron populations 1.69979 1.06064 1.26503 1.51346 1.24987 0.94837 0.99281 0.95558 0.86468 0.80078 0.83584 0.77426 1.19699 1.21217 1.21054 1.21223 0.93437 0.90284 1.49667 0.92047 1.19532 0.90625 0.87489 0.95529 1.60606 1.20895 1.01116 1.47901 1.21831 0.94777 0.89967 0.98905 1.22669 0.94628 0.94128 0.92006 0.92956 1.22761 0.98351 0.94887 1.00321 1.22807 0.98016 0.98132 0.98952 1.22896 0.99039 0.88620 0.98801 1.63587 1.16141 1.16319 1.25777 1.21970 0.87169 0.99013 0.94457 1.22299 0.96944 0.99570 1.00390 1.21456 0.95945 1.00776 0.97121 1.21525 0.98097 0.99774 0.96056 1.21532 0.96001 0.99424 0.98771 1.21546 0.95369 0.99965 0.97576 0.93088 1.00047 0.95427 0.86457 0.96678 0.91333 0.90613 0.91436 0.92098 0.91330 0.92699 0.91268 0.87141 0.92512 0.92194 0.91592 0.92793 0.92474 0.92658 0.91393 0.92372 0.90966 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.51 -14.50 9.32 -34.44 -0.32 -14.82 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.19 5.19 5.43 -4.98 -0.03 5.17 16 10 N -0.68 -14.50 4.74 -115.06 -0.55 -15.05 16 11 C 0.08 1.38 5.44 -3.82 -0.02 1.36 16 12 C 0.07 1.09 2.56 -66.18 -0.17 0.93 16 13 H 0.05 0.77 5.67 -51.93 -0.29 0.47 16 14 C -0.12 -1.53 6.50 -24.45 -0.16 -1.68 16 15 C -0.14 -1.52 6.97 -24.77 -0.17 -1.69 16 16 C 0.03 0.43 5.56 -2.83 -0.02 0.41 16 17 N -0.50 -7.40 4.73 -215.47 -1.02 -8.42 16 18 C 0.08 1.19 2.08 -67.71 -0.14 1.05 16 19 C -0.15 -1.88 4.65 -26.73 -0.12 -2.01 16 20 C -0.11 -1.31 5.92 -26.73 -0.16 -1.47 16 21 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 22 C -0.12 -1.45 5.93 -26.70 -0.16 -1.61 16 23 C -0.11 -1.44 5.10 -26.70 -0.14 -1.58 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H -0.02 -0.52 8.14 -51.93 -0.42 -0.94 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.32 6.61 8.37 -39.29 -0.33 6.28 16 28 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 1.34 8.05 -51.93 -0.42 0.92 16 30 H 0.08 0.96 8.00 -51.93 -0.42 0.55 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.64 4.77 -51.93 -0.25 0.39 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.11 1.93 6.22 -51.93 -0.32 1.61 16 37 H 0.06 0.67 6.26 -51.93 -0.33 0.34 16 38 H 0.06 0.77 6.09 -51.93 -0.32 0.45 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.05 0.65 6.58 -51.93 -0.34 0.31 16 LS Contribution 340.56 15.07 5.13 5.13 Total: -1.00 -29.57 340.56 -11.05 -40.62 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -8.47 Total: 3.24 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -1.86 Total: -15.90 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -0.83 Total: -50.04 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.57 -11.05 -40.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572357154.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.057 kcal (2) G-P(sol) polarization free energy of solvation -29.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds