Wall clock time and date at job start Mon Mar 30 2020 00:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00434 * 2 1 4 4 H 1.48494 * 109.47469 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46721 * 299.99498 * 3 2 1 6 6 H 1.48499 * 109.47168 * 59.99410 * 3 2 1 7 7 C 1.37882 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00012 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99721 * 0.02562 * 7 2 1 10 10 N 1.46894 * 109.46848 * 179.97438 * 9 7 2 11 11 C 1.46897 * 110.99894 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.47157 * 185.26702 * 11 10 9 13 13 H 1.09000 * 110.42299 * 294.22726 * 12 11 10 14 14 C 1.54906 * 110.37462 * 171.91044 * 12 11 10 15 15 C 1.55400 * 101.74271 * 204.19130 * 14 12 11 16 16 C 1.54319 * 102.89745 * 35.48042 * 15 14 12 17 17 N 1.47444 * 107.37308 * 337.89737 * 16 15 14 18 18 C 1.46903 * 110.99683 * 236.66366 * 17 16 15 19 19 C 1.52998 * 109.47381 * 58.76109 * 18 17 16 20 20 C 1.52996 * 109.47295 * 179.97438 * 19 18 17 21 21 C 1.53002 * 109.46934 * 60.00390 * 20 19 18 22 22 C 1.53003 * 109.46858 * 299.99566 * 21 20 19 23 23 C 1.53002 * 109.47081 * 298.76356 * 18 17 16 24 24 H 0.96998 * 119.99478 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47245 * 59.99272 * 9 7 2 26 26 H 1.08998 * 109.46649 * 299.99111 * 9 7 2 27 27 H 1.00906 * 111.00259 * 303.95135 * 10 9 7 28 28 H 1.08997 * 109.47817 * 65.26615 * 11 10 9 29 29 H 1.09001 * 109.47158 * 305.25964 * 11 10 9 30 30 H 1.09002 * 110.99064 * 322.19241 * 14 12 11 31 31 H 1.08996 * 110.98808 * 85.97186 * 14 12 11 32 32 H 1.08995 * 110.67763 * 277.17539 * 15 14 12 33 33 H 1.08998 * 110.84604 * 153.85932 * 15 14 12 34 34 H 1.08996 * 109.88439 * 218.40775 * 16 15 14 35 35 H 1.09006 * 109.88571 * 97.38680 * 16 15 14 36 36 H 1.08995 * 109.46967 * 178.76260 * 18 17 16 37 37 H 1.09004 * 109.47321 * 300.00312 * 19 18 17 38 38 H 1.09001 * 109.47014 * 59.99481 * 19 18 17 39 39 H 1.08995 * 109.47200 * 300.00241 * 20 19 18 40 40 H 1.09007 * 109.47323 * 179.97438 * 20 19 18 41 41 H 1.09002 * 109.47178 * 179.97438 * 21 20 19 42 42 H 1.09000 * 109.47648 * 59.99574 * 21 20 19 43 43 H 1.08995 * 109.47448 * 300.00254 * 22 21 20 44 44 H 1.09006 * 109.47061 * 179.97438 * 22 21 20 45 45 H 1.09007 * 109.46573 * 299.99991 * 23 18 17 46 46 H 1.08995 * 109.47298 * 60.00107 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 1.5052 -4.9070 -0.0001 12 6 2.5247 -6.0402 0.1324 13 1 3.1643 -6.0814 -0.7493 14 6 1.8018 -7.3948 0.3379 15 6 2.8962 -8.2314 1.0570 16 6 3.6049 -7.1841 1.9415 17 7 3.3403 -5.8587 1.3520 18 6 4.5951 -5.1585 1.0468 19 6 5.4248 -5.9991 0.0741 20 6 6.7313 -5.2695 -0.2443 21 6 7.5230 -5.0542 1.0472 22 6 6.6934 -4.2135 2.0198 23 6 5.3866 -4.9437 2.3384 24 1 -0.4849 0.8401 -0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 2.8404 -3.5488 -0.7809 28 1 0.9543 -5.0213 -0.9336 29 1 0.8102 -4.9438 0.8388 30 1 0.9237 -7.2764 0.9728 31 1 1.5319 -7.8424 -0.6186 32 1 3.5910 -8.6589 0.3341 33 1 2.4469 -9.0128 1.6699 34 1 4.6777 -7.3760 1.9561 35 1 3.2071 -7.2250 2.9555 36 1 4.3713 -4.1931 0.5930 37 1 5.6486 -6.9646 0.5279 38 1 4.8609 -6.1522 -0.8460 39 1 6.5071 -4.3042 -0.6982 40 1 7.3226 -5.8686 -0.9369 41 1 8.4541 -4.5348 0.8203 42 1 7.7472 -6.0195 1.5012 43 1 6.4692 -3.2483 1.5659 44 1 7.2573 -4.0605 2.9400 45 1 4.7955 -4.3448 3.0313 46 1 5.6104 -5.9091 2.7922 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572357154.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:40 Heat of formation + Delta-G solvation = -32.769760 kcal Electronic energy + Delta-G solvation = -21709.860952 eV Core-core repulsion = 18825.288025 eV Total energy + Delta-G solvation = -2884.572926 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.05751 -38.12505 -36.68394 -34.49701 -32.96568 -31.64775 -31.07404 -28.75913 -28.28891 -25.31376 -23.71094 -23.62743 -22.71394 -21.83329 -20.92161 -19.87870 -18.47995 -17.58109 -16.75656 -16.49802 -16.06525 -15.65976 -15.27716 -14.98582 -14.86487 -14.71112 -14.52119 -14.15590 -13.95815 -13.47371 -13.22610 -13.04960 -12.90023 -12.82232 -12.78701 -12.54661 -12.22331 -12.15317 -11.98346 -11.91771 -11.76073 -11.69171 -11.43417 -11.26031 -11.18015 -11.09383 -10.84103 -10.64721 -9.02396 -8.80948 -8.21319 -6.31877 1.39821 1.41139 1.54805 2.40273 3.11159 3.12068 3.53700 3.74672 3.91529 3.96175 4.02357 4.08720 4.21161 4.28643 4.39672 4.44123 4.49698 4.63560 4.64610 4.67884 4.70685 4.75778 4.82977 4.87697 4.94795 4.97631 5.05349 5.09656 5.13467 5.17377 5.23820 5.28607 5.29655 5.30207 5.36829 5.40447 5.46321 5.55723 5.63152 5.70890 6.04669 6.35358 6.47546 6.52714 6.78537 6.93125 7.38918 8.90752 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.016563 B = 0.005841 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.159714 B = 4792.635285 C = 6027.021316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.972 3.028 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.527 4.527 8 H 0.063 0.937 9 C 0.211 3.789 10 N -0.668 5.668 11 C 0.076 3.924 12 C 0.080 3.920 13 H 0.058 0.942 14 C -0.121 4.121 15 C -0.129 4.129 16 C 0.035 3.965 17 N -0.522 5.522 18 C 0.084 3.916 19 C -0.143 4.143 20 C -0.115 4.115 21 C -0.111 4.111 22 C -0.118 4.118 23 C -0.102 4.102 24 H 0.264 0.736 25 H -0.045 1.045 26 H -0.007 1.007 27 H 0.326 0.674 28 H 0.017 0.983 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.049 0.951 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.046 0.954 44 H 0.070 0.930 45 H 0.044 0.956 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.029 -17.057 1.116 21.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.205 1.205 7 C -0.565 4.565 8 H 0.081 0.919 9 C 0.083 3.917 10 N -0.298 5.298 11 C -0.054 4.054 12 C -0.028 4.028 13 H 0.076 0.924 14 C -0.160 4.160 15 C -0.167 4.167 16 C -0.093 4.093 17 N -0.245 5.245 18 C -0.025 4.025 19 C -0.181 4.181 20 C -0.153 4.153 21 C -0.149 4.149 22 C -0.156 4.156 23 C -0.140 4.140 24 H 0.073 0.927 25 H -0.027 1.027 26 H 0.012 0.988 27 H 0.142 0.858 28 H 0.035 0.965 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.065 0.935 44 H 0.089 0.911 45 H 0.063 0.937 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.678 -16.623 2.182 21.019 hybrid contribution -0.274 0.762 -1.427 1.641 sum 12.404 -15.862 0.754 20.150 Atomic orbital electron populations 1.70111 1.07845 1.27814 1.51915 1.25959 0.95763 1.03377 0.94735 0.85295 0.78956 0.78377 0.77732 1.18631 1.20214 1.20477 1.21536 0.93636 0.91357 1.49987 0.91910 1.19162 0.90634 0.89263 0.92599 1.60501 1.19898 1.01179 1.48202 1.21910 0.95657 0.89695 0.98133 1.22540 0.94033 0.93792 0.92472 0.92387 1.22748 0.98346 0.93543 1.01363 1.22770 0.97406 0.97695 0.98877 1.22912 0.99984 0.87685 0.98691 1.63458 1.16730 1.18279 1.25995 1.21825 0.87600 0.97811 0.95241 1.22179 0.96832 0.99688 0.99450 1.21467 0.95831 1.00170 0.97841 1.21494 0.97992 1.00228 0.95167 1.21521 0.95758 0.98596 0.99747 1.21492 0.95515 1.00370 0.96622 0.92712 1.02699 0.98842 0.85754 0.96479 0.93241 0.91448 0.89724 0.90657 0.89536 0.91542 0.91737 0.90832 0.91103 0.92678 0.93202 0.90980 0.91290 0.91225 0.93475 0.91114 0.93744 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.24 13.29 21.45 0.28 -57.95 16 2 C 0.00 -0.04 5.46 84.66 0.46 0.43 16 3 Si 0.97 45.45 29.54 68.60 2.03 47.48 16 4 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.53 -31.00 9.32 25.60 0.24 -30.76 16 8 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 9 C 0.21 11.86 5.43 85.56 0.46 12.32 16 10 N -0.67 -29.99 4.74 -517.93 -2.46 -32.45 16 11 C 0.08 2.88 5.44 86.31 0.47 3.35 16 12 C 0.08 2.33 2.56 45.39 0.12 2.45 16 13 H 0.06 1.64 5.67 -2.39 -0.01 1.62 16 14 C -0.12 -2.76 6.50 32.07 0.21 -2.55 16 15 C -0.13 -2.40 6.97 31.87 0.22 -2.18 16 16 C 0.03 0.79 5.56 86.65 0.48 1.27 16 17 N -0.52 -15.37 4.73 -835.61 -3.95 -19.32 16 18 C 0.08 2.40 2.08 44.91 0.09 2.50 16 19 C -0.14 -3.24 4.65 30.59 0.14 -3.10 16 20 C -0.11 -2.40 5.92 30.59 0.18 -2.22 16 21 C -0.11 -2.13 5.92 30.60 0.18 -1.95 16 22 C -0.12 -2.77 5.93 30.61 0.18 -2.58 16 23 C -0.10 -2.71 5.10 30.61 0.16 -2.55 16 24 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 25 H -0.04 -2.68 8.14 -2.39 -0.02 -2.70 16 26 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 27 H 0.33 13.99 8.37 -89.69 -0.75 13.24 16 28 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.05 2.03 8.05 -2.39 -0.02 2.02 16 30 H 0.07 1.65 8.00 -2.39 -0.02 1.63 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.07 1.35 4.77 -2.39 -0.01 1.34 16 35 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.07 2.66 6.22 -2.39 -0.01 2.64 16 37 H 0.07 1.43 6.26 -2.39 -0.01 1.41 16 38 H 0.05 1.31 6.09 -2.39 -0.01 1.29 16 39 H 0.05 1.19 8.14 -2.39 -0.02 1.18 16 40 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 45 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 46 H 0.07 1.57 6.58 -2.39 -0.02 1.55 16 Total: -1.00 -65.49 340.56 -0.32 -65.81 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.18 Total: 22.01 kcal Atomic # 6 Polarization: -29.18 SS G_CDS: 3.60 Total: -25.58 kcal Atomic # 7 Polarization: -103.59 SS G_CDS: -6.12 Total: -109.71 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -65.49 -0.32 -65.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572357154.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.038 kcal (2) G-P(sol) polarization free energy of solvation -65.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds