Wall clock time and date at job start Mon Mar 30 2020 00:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 113.99678 * 2 1 4 4 C 1.52991 * 110.43594 * 303.11422 * 3 2 1 5 5 N 1.46896 * 109.47381 * 295.87065 * 4 3 2 6 6 C 1.46896 * 111.00224 * 176.75055 * 5 4 3 7 7 C 1.53004 * 109.47296 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.46701 * 304.99602 * 7 6 5 9 9 C 1.47195 * 109.47165 * 64.99600 * 7 6 5 10 10 N 5.12901 * 84.56045 * 259.66867 * 2 1 3 11 11 C 1.52996 * 109.47207 * 184.99858 * 7 6 5 12 12 C 1.50698 * 109.47455 * 175.00060 * 11 7 6 13 13 H 1.08004 * 119.99526 * 359.97438 * 12 11 7 14 14 C 1.37881 * 120.00464 * 180.02562 * 12 11 7 15 15 N 1.31514 * 119.99826 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99995 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47348 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47051 * 119.99798 * 16 14 12 19 19 H 1.48499 * 109.46782 * 239.99668 * 16 14 12 20 20 C 1.54891 * 110.48066 * 180.42774 * 3 2 1 21 21 C 1.54888 * 102.75304 * 279.26420 * 20 3 2 22 22 C 1.54262 * 104.19377 * 322.06253 * 21 20 3 23 23 C 1.53870 * 106.60303 * 23.60489 * 22 21 20 24 24 H 1.09005 * 109.47375 * 303.29852 * 1 2 3 25 25 H 1.09000 * 109.47108 * 63.29634 * 1 2 3 26 26 H 1.08998 * 109.47454 * 183.30148 * 1 2 3 27 27 H 1.09001 * 109.47533 * 55.87072 * 4 3 2 28 28 H 1.09007 * 109.46902 * 175.86887 * 4 3 2 29 29 H 1.00894 * 111.00456 * 52.79212 * 5 4 3 30 30 H 1.08995 * 109.47086 * 299.99907 * 6 5 4 31 31 H 1.09006 * 109.47605 * 59.99721 * 6 5 4 32 32 H 1.09006 * 109.47197 * 294.99970 * 11 7 6 33 33 H 1.09006 * 109.47468 * 54.99627 * 11 7 6 34 34 H 0.96991 * 120.00152 * 180.02562 * 15 14 12 35 35 H 1.09002 * 110.75515 * 37.59017 * 20 3 2 36 36 H 1.09007 * 110.75160 * 160.94960 * 20 3 2 37 37 H 1.08992 * 110.48536 * 203.38042 * 21 20 3 38 38 H 1.08999 * 110.48274 * 80.73715 * 21 20 3 39 39 H 1.09005 * 110.02841 * 264.32318 * 22 21 20 40 40 H 1.08996 * 110.03172 * 142.89601 * 22 21 20 41 41 H 1.08995 * 110.03452 * 240.71328 * 23 22 21 42 42 H 1.09006 * 110.02780 * 119.28537 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5119 2.1121 -1.2008 5 7 1.9704 1.4753 -2.4426 6 6 1.4458 2.1796 -3.6202 7 6 1.9442 1.4893 -4.8914 8 1 3.0323 1.4297 -4.8697 9 6 1.3798 0.1319 -4.9661 10 7 0.9428 -0.9157 -5.0231 11 6 1.5019 2.2936 -6.1155 12 6 2.0950 1.6830 -7.3590 13 1 2.7249 0.8089 -7.2837 14 6 1.8345 2.2408 -8.5927 15 7 1.0679 3.3055 -8.6843 16 14 2.5704 1.4843 -10.1340 17 1 3.3898 0.3028 -9.7628 18 1 1.4787 1.0627 -11.0482 19 1 3.4281 2.4864 -10.8161 20 6 3.5562 1.2106 -0.0108 21 6 3.8927 0.9423 1.4771 22 6 2.8825 1.8100 2.2557 23 6 1.6857 2.0410 1.3167 24 1 -0.3634 0.5642 0.8590 25 1 -0.3633 0.4618 -0.9181 26 1 -0.3634 -1.0259 0.0592 27 1 0.4225 2.1445 -1.1899 28 1 1.9062 3.1268 -1.1457 29 1 1.7175 0.4988 -2.4631 30 1 0.3562 2.1607 -3.5994 31 1 1.7915 3.2134 -3.6092 32 1 0.4142 2.2784 -6.1866 33 1 1.8452 3.3235 -6.0170 34 1 0.8843 3.6977 -9.5522 35 1 3.8879 0.3826 -0.6374 36 1 3.9985 2.1496 -0.3437 37 1 4.9135 1.2530 1.6993 38 1 3.7533 -0.1121 1.7155 39 1 3.3374 2.7641 2.5223 40 1 2.5563 1.2873 3.1548 41 1 1.5597 3.1070 1.1276 42 1 0.7785 1.6302 1.7600 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573190940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:31 Heat of formation + Delta-G solvation = -42.440810 kcal Electronic energy + Delta-G solvation = -20389.663627 eV Core-core repulsion = 17368.838238 eV Total energy + Delta-G solvation = -3020.825389 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.90961 -37.22270 -35.74029 -34.94201 -33.51485 -31.67204 -29.12187 -29.07754 -26.93028 -26.12322 -23.91656 -22.43600 -21.76843 -20.61244 -19.83844 -16.89510 -16.67654 -16.56201 -16.16175 -15.24252 -14.99522 -14.78056 -14.72695 -14.41249 -14.09272 -13.18900 -13.08384 -13.05406 -12.59186 -12.35613 -12.11984 -11.90424 -11.74340 -11.60415 -11.42098 -11.32444 -11.20695 -11.09724 -11.03005 -10.73558 -10.57990 -10.54414 -10.50079 -10.24957 -9.71235 -9.46072 -9.19080 -8.45833 -8.29882 -6.09593 -4.12462 3.28827 3.36978 3.42001 3.57703 3.61792 3.65429 4.14550 4.41303 4.45315 4.56587 4.70796 4.82339 4.96957 5.09434 5.19349 5.24737 5.28606 5.32627 5.40306 5.45599 5.53770 5.57327 5.64299 5.70323 5.71552 5.76191 5.85147 5.87065 6.01635 6.14839 6.22820 6.25258 6.36791 6.54960 7.08396 7.17396 7.43182 7.47402 7.53371 7.85972 8.23529 8.42433 8.92453 9.53074 11.01401 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033898 B = 0.003630 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.807378 B = 7711.168360 C = 7867.003340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.370 6.370 3 C 0.110 3.890 4 C 0.038 3.962 5 N -0.684 5.684 6 C 0.067 3.933 7 C 0.007 3.993 8 H 0.111 0.889 9 C 0.240 3.760 10 N -0.476 5.476 11 C 0.032 3.968 12 C -0.525 4.525 13 H 0.058 0.942 14 C 0.062 3.938 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.282 1.282 20 C -0.093 4.093 21 C -0.126 4.126 22 C -0.119 4.119 23 C -0.149 4.149 24 H 0.042 0.958 25 H 0.040 0.960 26 H 0.084 0.916 27 H 0.031 0.969 28 H 0.084 0.916 29 H 0.343 0.657 30 H 0.032 0.968 31 H 0.091 0.909 32 H 0.023 0.977 33 H 0.040 0.960 34 H 0.262 0.738 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.926 0.651 21.247 21.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.288 6.288 3 C 0.070 3.930 4 C -0.092 4.092 5 N -0.316 5.316 6 C -0.063 4.063 7 C -0.015 4.015 8 H 0.129 0.871 9 C -0.076 4.076 10 N -0.153 5.153 11 C -0.006 4.006 12 C -0.563 4.563 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.208 1.208 20 C -0.130 4.130 21 C -0.164 4.164 22 C -0.156 4.156 23 C -0.187 4.187 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.050 0.950 28 H 0.102 0.898 29 H 0.162 0.838 30 H 0.050 0.950 31 H 0.109 0.891 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.901 -0.640 21.032 21.127 hybrid contribution -0.808 0.039 -0.995 1.282 sum 1.093 -0.601 20.037 20.076 Atomic orbital electron populations 1.22781 0.81923 1.02600 0.99958 1.87986 1.19000 1.27120 1.94744 1.22469 0.95043 0.82961 0.92497 1.22531 0.97648 0.98997 0.90048 1.60531 1.63204 1.07010 1.00867 1.22093 0.97114 0.98888 0.88207 1.19319 1.01132 0.83948 0.97056 0.87091 1.29330 0.92454 0.94633 0.91202 1.81050 1.10684 1.12989 1.10551 1.19167 0.97439 0.95087 0.88954 1.21193 1.30748 1.13107 0.91271 0.92417 1.24957 0.95024 0.94863 0.99173 1.69945 1.37135 1.21327 1.24685 0.86533 0.79074 0.79351 0.83121 1.19644 1.21019 1.20820 1.22328 0.91373 1.03251 0.96068 1.22391 0.98479 1.00092 0.95421 1.22048 0.95654 0.99869 0.98071 1.22744 0.99157 1.00850 0.95962 0.93906 0.94111 0.89726 0.95049 0.89770 0.83803 0.94979 0.89098 0.95815 0.94216 0.92870 0.90096 0.89749 0.91725 0.91476 0.91878 0.92139 0.90841 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.25 101.05 1.04 1.28 16 2 O -0.37 -4.55 9.90 -35.23 -0.35 -4.90 16 3 C 0.11 1.17 0.61 -88.96 -0.05 1.12 16 4 C 0.04 0.42 4.27 -3.83 -0.02 0.41 16 5 N -0.68 -9.28 6.12 -113.78 -0.70 -9.98 16 6 C 0.07 1.00 5.12 -3.82 -0.02 0.98 16 7 C 0.01 0.14 2.42 -93.41 -0.23 -0.09 16 8 H 0.11 1.99 8.14 -51.93 -0.42 1.56 16 9 C 0.24 4.96 12.98 -20.75 -0.27 4.69 16 10 N -0.48 -10.57 18.54 42.17 0.78 -9.79 16 11 C 0.03 0.75 4.42 -27.89 -0.12 0.62 16 12 C -0.53 -14.05 8.60 -34.44 -0.30 -14.35 16 13 H 0.06 1.55 7.59 -52.48 -0.40 1.15 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 16 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C -0.09 -0.97 5.66 -24.74 -0.14 -1.11 16 21 C -0.13 -1.14 6.81 -25.08 -0.17 -1.31 16 22 C -0.12 -0.97 6.80 -25.62 -0.17 -1.15 16 23 C -0.15 -1.31 5.94 -25.61 -0.15 -1.46 16 24 H 0.04 0.37 6.27 -51.93 -0.33 0.05 16 25 H 0.04 0.45 6.54 -51.93 -0.34 0.11 16 26 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.03 0.35 6.45 -51.93 -0.33 0.02 16 28 H 0.08 0.87 8.05 -51.93 -0.42 0.45 16 29 H 0.34 5.15 7.31 -39.30 -0.29 4.87 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 0.84 8.06 -51.93 -0.42 0.42 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.58 7.77 -51.93 -0.40 0.18 16 42 H 0.07 0.60 6.13 -51.93 -0.32 0.28 16 LS Contribution 340.08 15.07 5.12 5.12 Total: -1.00 -29.63 340.08 -7.15 -36.78 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -7.03 Total: -0.01 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -0.70 Total: -8.76 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 0.82 Total: -44.63 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -0.35 Total: -4.90 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.63 -7.15 -36.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573190940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.658 kcal (2) G-P(sol) polarization free energy of solvation -29.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds