Wall clock time and date at job start Mon Mar 30 2020 00:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 113.99678 * 2 1 4 4 C 1.52991 * 110.43594 * 303.11422 * 3 2 1 5 5 N 1.46896 * 109.47381 * 295.87065 * 4 3 2 6 6 C 1.46896 * 111.00224 * 176.75055 * 5 4 3 7 7 C 1.53004 * 109.47296 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.46701 * 304.99602 * 7 6 5 9 9 C 1.47195 * 109.47165 * 64.99600 * 7 6 5 10 10 N 5.12901 * 84.56045 * 259.66867 * 2 1 3 11 11 C 1.52996 * 109.47207 * 184.99858 * 7 6 5 12 12 C 1.50698 * 109.47455 * 175.00060 * 11 7 6 13 13 H 1.08004 * 119.99526 * 359.97438 * 12 11 7 14 14 C 1.37881 * 120.00464 * 180.02562 * 12 11 7 15 15 N 1.31514 * 119.99826 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99995 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47348 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47051 * 119.99798 * 16 14 12 19 19 H 1.48499 * 109.46782 * 239.99668 * 16 14 12 20 20 C 1.54891 * 110.48066 * 180.42774 * 3 2 1 21 21 C 1.54888 * 102.75304 * 279.26420 * 20 3 2 22 22 C 1.54262 * 104.19377 * 322.06253 * 21 20 3 23 23 C 1.53870 * 106.60303 * 23.60489 * 22 21 20 24 24 H 1.09005 * 109.47375 * 303.29852 * 1 2 3 25 25 H 1.09000 * 109.47108 * 63.29634 * 1 2 3 26 26 H 1.08998 * 109.47454 * 183.30148 * 1 2 3 27 27 H 1.09001 * 109.47533 * 55.87072 * 4 3 2 28 28 H 1.09007 * 109.46902 * 175.86887 * 4 3 2 29 29 H 1.00894 * 111.00456 * 52.79212 * 5 4 3 30 30 H 1.08995 * 109.47086 * 299.99907 * 6 5 4 31 31 H 1.09006 * 109.47605 * 59.99721 * 6 5 4 32 32 H 1.09006 * 109.47197 * 294.99970 * 11 7 6 33 33 H 1.09006 * 109.47468 * 54.99627 * 11 7 6 34 34 H 0.96991 * 120.00152 * 180.02562 * 15 14 12 35 35 H 1.09002 * 110.75515 * 37.59017 * 20 3 2 36 36 H 1.09007 * 110.75160 * 160.94960 * 20 3 2 37 37 H 1.08992 * 110.48536 * 203.38042 * 21 20 3 38 38 H 1.08999 * 110.48274 * 80.73715 * 21 20 3 39 39 H 1.09005 * 110.02841 * 264.32318 * 22 21 20 40 40 H 1.08996 * 110.03172 * 142.89601 * 22 21 20 41 41 H 1.08995 * 110.03452 * 240.71328 * 23 22 21 42 42 H 1.09006 * 110.02780 * 119.28537 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5119 2.1121 -1.2008 5 7 1.9704 1.4753 -2.4426 6 6 1.4458 2.1796 -3.6202 7 6 1.9442 1.4893 -4.8914 8 1 3.0323 1.4297 -4.8697 9 6 1.3798 0.1319 -4.9661 10 7 0.9428 -0.9157 -5.0231 11 6 1.5019 2.2936 -6.1155 12 6 2.0950 1.6830 -7.3590 13 1 2.7249 0.8089 -7.2837 14 6 1.8345 2.2408 -8.5927 15 7 1.0679 3.3055 -8.6843 16 14 2.5704 1.4843 -10.1340 17 1 3.3898 0.3028 -9.7628 18 1 1.4787 1.0627 -11.0482 19 1 3.4281 2.4864 -10.8161 20 6 3.5562 1.2106 -0.0108 21 6 3.8927 0.9423 1.4771 22 6 2.8825 1.8100 2.2557 23 6 1.6857 2.0410 1.3167 24 1 -0.3634 0.5642 0.8590 25 1 -0.3633 0.4618 -0.9181 26 1 -0.3634 -1.0259 0.0592 27 1 0.4225 2.1445 -1.1899 28 1 1.9062 3.1268 -1.1457 29 1 1.7175 0.4988 -2.4631 30 1 0.3562 2.1607 -3.5994 31 1 1.7915 3.2134 -3.6092 32 1 0.4142 2.2784 -6.1866 33 1 1.8452 3.3235 -6.0170 34 1 0.8843 3.6977 -9.5522 35 1 3.8879 0.3826 -0.6374 36 1 3.9985 2.1496 -0.3437 37 1 4.9135 1.2530 1.6993 38 1 3.7533 -0.1121 1.7155 39 1 3.3374 2.7641 2.5223 40 1 2.5563 1.2873 3.1548 41 1 1.5597 3.1070 1.1276 42 1 0.7785 1.6302 1.7600 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573190940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:30 Heat of formation + Delta-G solvation = -60.589163 kcal Electronic energy + Delta-G solvation = -20390.450599 eV Core-core repulsion = 17368.838238 eV Total energy + Delta-G solvation = -3021.612361 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.74157 -38.71423 -36.52579 -36.34804 -35.35240 -33.34415 -30.22745 -29.80202 -28.20941 -27.29341 -25.13553 -23.60893 -23.56325 -21.33863 -20.64305 -18.55386 -18.28663 -17.54699 -17.29680 -16.62923 -16.07905 -15.82117 -15.70429 -15.40043 -15.34264 -14.66941 -14.58142 -14.23343 -13.92565 -13.80027 -13.50957 -13.23029 -13.07884 -12.78686 -12.60518 -12.58414 -12.48139 -12.27190 -12.15049 -12.02325 -11.97257 -11.83278 -11.41827 -11.35651 -11.23456 -11.15608 -10.55942 -10.40596 -9.37894 -8.20124 -6.28121 1.38840 1.41822 1.52458 1.92632 1.95428 2.41208 2.78633 3.14978 3.18069 3.24610 3.70566 3.75511 3.89687 4.13719 4.27134 4.32920 4.38216 4.40621 4.46507 4.61399 4.63780 4.67904 4.73455 4.82752 4.89688 4.93207 4.94982 4.99043 5.05538 5.13400 5.18069 5.31414 5.42981 5.46810 5.55461 5.61865 5.78875 5.99514 6.21005 6.28527 6.37523 6.74300 6.86811 7.40497 8.91013 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033898 B = 0.003630 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.807378 B = 7711.168360 C = 7867.003340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.391 6.391 3 C 0.106 3.894 4 C 0.037 3.963 5 N -0.683 5.683 6 C 0.078 3.922 7 C 0.019 3.981 8 H 0.123 0.877 9 C 0.250 3.750 10 N -0.505 5.505 11 C 0.039 3.961 12 C -0.539 4.539 13 H 0.053 0.947 14 C 0.012 3.988 15 N -0.923 5.923 16 Si 0.949 3.051 17 H -0.270 1.270 18 H -0.285 1.285 19 H -0.272 1.272 20 C -0.095 4.095 21 C -0.124 4.124 22 C -0.116 4.116 23 C -0.146 4.146 24 H 0.060 0.940 25 H 0.031 0.969 26 H 0.088 0.912 27 H 0.033 0.967 28 H 0.099 0.901 29 H 0.334 0.666 30 H 0.029 0.971 31 H 0.109 0.891 32 H 0.000 1.000 33 H 0.038 0.962 34 H 0.264 0.736 35 H 0.059 0.941 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.573 1.307 22.384 22.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.311 6.311 3 C 0.067 3.933 4 C -0.092 4.092 5 N -0.314 5.314 6 C -0.052 4.052 7 C -0.003 4.003 8 H 0.141 0.859 9 C -0.066 4.066 10 N -0.183 5.183 11 C 0.000 4.000 12 C -0.577 4.577 13 H 0.071 0.929 14 C -0.187 4.187 15 N -0.563 5.563 16 Si 0.775 3.225 17 H -0.195 1.195 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.132 4.132 21 C -0.162 4.162 22 C -0.154 4.154 23 C -0.184 4.184 24 H 0.078 0.922 25 H 0.049 0.951 26 H 0.107 0.893 27 H 0.052 0.948 28 H 0.117 0.883 29 H 0.151 0.849 30 H 0.047 0.953 31 H 0.127 0.873 32 H 0.018 0.982 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.555 0.018 22.184 22.331 hybrid contribution -1.014 -0.177 -1.329 1.681 sum 1.542 -0.159 20.855 20.912 Atomic orbital electron populations 1.22851 0.81180 1.03158 1.00223 1.87961 1.19955 1.28267 1.94878 1.22579 0.95001 0.82548 0.93176 1.22639 0.97883 0.99607 0.89080 1.60530 1.63138 1.06424 1.01318 1.21949 0.96869 0.99270 0.87086 1.19245 1.01614 0.82404 0.97028 0.85946 1.29727 0.91736 0.94843 0.90310 1.81045 1.11700 1.14007 1.11514 1.18987 0.95642 0.95498 0.89860 1.21584 1.30430 1.12874 0.92796 0.92887 1.25707 0.95567 0.95380 1.02086 1.70031 1.38346 1.22487 1.25443 0.85639 0.78353 0.78758 0.79800 1.19456 1.21121 1.19712 1.22336 0.91436 1.02716 0.96719 1.22367 0.99544 0.99692 0.94565 1.22053 0.95123 1.00383 0.97846 1.22733 0.99492 1.01306 0.94840 0.92152 0.95054 0.89344 0.94848 0.88274 0.84862 0.95280 0.87323 0.98189 0.94360 0.92698 0.92186 0.89086 0.90542 0.92649 0.90476 0.91746 0.89549 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.25 113.37 1.16 1.60 16 2 O -0.39 -9.32 9.90 -148.98 -1.47 -10.80 16 3 C 0.11 2.11 0.61 -9.72 -0.01 2.10 16 4 C 0.04 0.77 4.27 86.30 0.37 1.14 16 5 N -0.68 -17.65 6.12 -513.90 -3.14 -20.79 16 6 C 0.08 2.23 5.12 86.31 0.44 2.67 16 7 C 0.02 0.69 2.42 -12.60 -0.03 0.66 16 8 H 0.12 4.22 8.14 -2.39 -0.02 4.20 16 9 C 0.25 10.25 12.98 89.44 1.16 11.41 16 10 N -0.51 -22.46 18.54 20.01 0.37 -22.09 16 11 C 0.04 1.80 4.42 29.85 0.13 1.93 16 12 C -0.54 -28.75 8.60 25.60 0.22 -28.53 16 13 H 0.05 2.82 7.59 -2.91 -0.02 2.80 16 14 C 0.01 0.63 5.46 84.66 0.46 1.10 16 15 N -0.92 -53.03 13.29 21.45 0.28 -52.75 16 16 Si 0.95 43.68 29.54 68.60 2.03 45.71 16 17 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 20 C -0.09 -1.86 5.66 31.89 0.18 -1.68 16 21 C -0.12 -2.05 6.81 31.67 0.22 -1.83 16 22 C -0.12 -1.62 6.80 31.32 0.21 -1.41 16 23 C -0.15 -2.21 5.94 31.32 0.19 -2.03 16 24 H 0.06 0.95 6.27 -2.38 -0.01 0.94 16 25 H 0.03 0.66 6.54 -2.39 -0.02 0.65 16 26 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.03 0.69 6.45 -2.39 -0.02 0.68 16 28 H 0.10 1.77 8.05 -2.38 -0.02 1.75 16 29 H 0.33 9.82 7.31 -89.70 -0.66 9.16 16 30 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.11 2.75 8.14 -2.38 -0.02 2.73 16 32 H 0.00 -0.02 8.14 -2.38 -0.02 -0.03 16 33 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 35 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.09 1.64 8.06 -2.38 -0.02 1.62 16 37 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.09 1.10 7.77 -2.39 -0.02 1.08 16 42 H 0.07 1.06 6.13 -2.38 -0.01 1.04 16 Total: -1.00 -62.37 340.08 3.11 -59.26 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.34 Total: 14.34 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: 4.71 Total: -12.88 kcal Atomic # 7 Polarization: -93.14 SS G_CDS: -2.49 Total: -95.63 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -1.47 Total: -10.80 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -62.37 3.11 -59.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573190940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.332 kcal (2) G-P(sol) polarization free energy of solvation -62.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds