Wall clock time and date at job start Mon Mar 30 2020 00:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 113.99532 * 2 1 4 4 C 1.52997 * 110.01788 * 304.01325 * 3 2 1 5 5 N 1.46896 * 109.47070 * 301.39262 * 4 3 2 6 6 C 1.46907 * 111.00041 * 174.17623 * 5 4 3 7 7 C 1.52997 * 109.46963 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47675 * 55.00074 * 7 6 5 9 9 C 1.47205 * 109.47151 * 294.99563 * 7 6 5 10 10 N 6.10152 * 116.44919 * 285.42104 * 2 1 3 11 11 C 1.53003 * 109.46949 * 175.00207 * 7 6 5 12 12 C 1.50701 * 109.47198 * 184.99902 * 11 7 6 13 13 H 1.08005 * 119.99796 * 359.97438 * 12 11 7 14 14 C 1.37874 * 120.00147 * 179.72718 * 12 11 7 15 15 N 1.31516 * 120.00006 * 0.26971 * 14 12 11 16 16 Si 1.86802 * 120.00126 * 180.27665 * 14 12 11 17 17 H 1.48494 * 109.47354 * 89.99689 * 16 14 12 18 18 H 1.48505 * 109.47020 * 209.99654 * 16 14 12 19 19 H 1.48503 * 109.46775 * 329.99338 * 16 14 12 20 20 C 1.54263 * 110.03042 * 65.40555 * 3 2 1 21 21 C 1.54961 * 104.16397 * 95.75400 * 20 3 2 22 22 C 1.54891 * 102.77461 * 37.88338 * 21 20 3 23 23 C 1.53871 * 110.02912 * 182.62132 * 3 2 1 24 24 H 1.09006 * 109.46880 * 176.89696 * 1 2 3 25 25 H 1.08998 * 109.47531 * 296.89483 * 1 2 3 26 26 H 1.08996 * 109.47655 * 56.90028 * 1 2 3 27 27 H 1.08998 * 109.47332 * 181.38992 * 4 3 2 28 28 H 1.09004 * 109.47057 * 61.39440 * 4 3 2 29 29 H 1.00901 * 110.99921 * 298.13146 * 5 4 3 30 30 H 1.09000 * 109.46887 * 59.99750 * 6 5 4 31 31 H 1.09000 * 109.46924 * 299.99742 * 6 5 4 32 32 H 1.09002 * 109.47151 * 64.99677 * 11 7 6 33 33 H 1.08995 * 109.47076 * 304.99793 * 11 7 6 34 34 H 0.96996 * 120.00503 * 180.02562 * 15 14 12 35 35 H 1.08998 * 110.48775 * 214.40204 * 20 3 2 36 36 H 1.08999 * 110.49005 * 337.04021 * 20 3 2 37 37 H 1.09004 * 110.71935 * 279.57752 * 21 20 3 38 38 H 1.09000 * 110.76958 * 156.22271 * 21 20 3 39 39 H 1.08997 * 110.48932 * 203.40435 * 22 21 20 40 40 H 1.09003 * 110.48607 * 80.76545 * 22 21 20 41 41 H 1.08993 * 110.03398 * 359.95117 * 23 3 2 42 42 H 1.09003 * 110.03024 * 121.38889 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 1.4885 2.1111 -1.1916 5 7 1.8150 1.4072 -2.4390 6 6 1.2103 2.0797 -3.5967 7 6 1.5711 1.3190 -4.8741 8 1 1.2722 0.2757 -4.7726 9 6 3.0245 1.3938 -5.0958 10 7 4.1466 1.4526 -5.2662 11 6 0.8410 1.9452 -6.0640 12 6 1.0985 1.1232 -7.3006 13 1 1.7211 0.2424 -7.2435 14 6 0.5353 1.4925 -8.5036 15 7 -0.2224 2.5652 -8.5731 16 14 0.8482 0.4692 -10.0347 17 1 -0.1965 -0.5796 -10.1512 18 1 0.8057 1.3455 -11.2329 19 1 2.1843 -0.1715 -9.9373 20 6 1.6740 2.0336 1.3178 21 6 2.9103 1.7803 2.2170 22 6 4.0872 1.8679 1.2138 23 6 3.5438 1.1998 -0.0661 24 1 -0.3633 -1.0262 -0.0556 25 1 -0.3634 0.4648 0.9165 26 1 -0.3634 0.5612 -0.8608 27 1 1.9557 3.0958 -1.1970 28 1 0.4073 2.2224 -1.1095 29 1 2.8135 1.3184 -2.5533 30 1 1.5877 3.1002 -3.6620 31 1 0.1267 2.0998 -3.4800 32 1 1.2052 2.9606 -6.2203 33 1 -0.2296 1.9704 -5.8610 34 1 -0.6190 2.8249 -9.4193 35 1 1.5432 3.1012 1.1413 36 1 0.7783 1.6085 1.7708 37 1 2.8616 0.7899 2.6697 38 1 2.9965 2.5520 2.9820 39 1 4.9518 1.3222 1.5914 40 1 4.3467 2.9087 1.0201 41 1 3.8448 0.1527 -0.0973 42 1 3.9165 1.7224 -0.9471 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573190941.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:33 Heat of formation + Delta-G solvation = -40.247554 kcal Electronic energy + Delta-G solvation = -20393.760680 eV Core-core repulsion = 17373.030397 eV Total energy + Delta-G solvation = -3020.730282 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.88618 -37.22658 -35.72864 -34.95429 -33.52090 -31.66740 -29.11667 -29.00735 -26.89883 -26.02134 -23.93741 -22.55458 -21.76592 -20.77501 -19.55768 -17.16770 -16.73452 -16.46977 -15.90285 -15.50256 -15.16103 -14.74150 -14.44660 -14.20862 -13.84213 -13.29836 -13.17742 -13.04522 -12.64328 -12.25304 -12.13789 -11.99221 -11.73446 -11.57178 -11.51038 -11.28188 -11.21271 -11.14670 -11.00966 -10.77908 -10.71642 -10.54700 -10.44003 -10.26338 -9.62208 -9.38215 -9.18677 -8.45515 -8.28043 -6.09587 -4.12615 3.29700 3.36346 3.41205 3.56824 3.62161 3.71524 4.25414 4.37929 4.40539 4.45216 4.74569 4.81315 5.00842 5.08853 5.20708 5.28467 5.30860 5.37991 5.41789 5.48524 5.49426 5.55815 5.63934 5.68202 5.72090 5.76123 5.84422 5.88972 5.91746 6.06934 6.14072 6.17952 6.36540 6.54750 7.07410 7.28883 7.42890 7.48930 7.53132 7.85660 8.23285 8.40742 8.91996 9.52894 11.01339 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033528 B = 0.003698 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.921168 B = 7569.435741 C = 7888.094814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.362 6.362 3 C 0.119 3.881 4 C 0.034 3.966 5 N -0.682 5.682 6 C 0.067 3.933 7 C 0.007 3.993 8 H 0.111 0.889 9 C 0.241 3.759 10 N -0.477 5.477 11 C 0.033 3.967 12 C -0.526 4.526 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.892 5.892 16 Si 0.892 3.108 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.151 4.151 21 C -0.119 4.119 22 C -0.124 4.124 23 C -0.112 4.112 24 H 0.081 0.919 25 H 0.033 0.967 26 H 0.052 0.948 27 H 0.038 0.962 28 H 0.078 0.922 29 H 0.339 0.661 30 H 0.033 0.967 31 H 0.089 0.911 32 H 0.024 0.976 33 H 0.039 0.961 34 H 0.262 0.738 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.758 -0.282 21.313 21.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.280 6.280 3 C 0.079 3.921 4 C -0.096 4.096 5 N -0.314 5.314 6 C -0.063 4.063 7 C -0.015 4.015 8 H 0.129 0.871 9 C -0.075 4.075 10 N -0.154 5.154 11 C -0.006 4.006 12 C -0.564 4.564 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.189 4.189 21 C -0.157 4.157 22 C -0.162 4.162 23 C -0.150 4.150 24 H 0.099 0.901 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.097 0.903 29 H 0.158 0.842 30 H 0.051 0.949 31 H 0.108 0.892 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.949 -0.708 20.981 21.084 hybrid contribution -0.029 0.525 -1.101 1.220 sum 1.920 -0.183 19.881 19.974 Atomic orbital electron populations 1.22734 0.81774 1.02543 0.99713 1.87982 1.19273 1.26110 1.94645 1.22127 0.93667 0.83782 0.92518 1.22580 1.01471 0.95120 0.90385 1.60473 1.17168 1.52574 1.01144 1.22090 1.00647 0.95155 0.88376 1.19326 0.82150 1.03368 0.96630 0.87082 1.29343 0.95025 0.91819 0.91322 1.81052 1.13663 1.10250 1.10439 1.19161 0.95662 0.96278 0.89497 1.21152 1.30800 1.11161 0.93284 0.92479 1.24953 0.94918 0.95085 0.99027 1.69936 1.32578 1.24370 1.26219 0.86587 0.78804 0.80151 0.82526 1.20419 1.21179 1.19858 1.22988 0.99076 1.00733 0.96080 1.22437 0.94303 1.01698 0.97265 1.22368 0.98020 1.00645 0.95155 1.22128 0.92396 1.02489 0.97987 0.90073 0.94873 0.92972 0.94428 0.90341 0.84200 0.94868 0.89227 0.95794 0.94248 0.92810 0.90860 0.90772 0.91218 0.91667 0.91389 0.91630 0.90040 0.91218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.31 101.05 1.04 1.34 16 2 O -0.36 -4.51 10.14 -35.23 -0.36 -4.87 16 3 C 0.12 1.28 0.77 -89.51 -0.07 1.22 16 4 C 0.03 0.39 3.84 -3.83 -0.01 0.37 16 5 N -0.68 -9.29 6.30 -113.78 -0.72 -10.01 16 6 C 0.07 1.00 5.11 -3.82 -0.02 0.98 16 7 C 0.01 0.13 2.42 -93.40 -0.23 -0.09 16 8 H 0.11 2.01 8.14 -51.93 -0.42 1.59 16 9 C 0.24 4.95 12.98 -20.74 -0.27 4.68 16 10 N -0.48 -10.50 18.54 42.18 0.78 -9.72 16 11 C 0.03 0.76 4.42 -27.88 -0.12 0.64 16 12 C -0.53 -14.09 8.60 -34.44 -0.30 -14.39 16 13 H 0.06 1.53 7.59 -52.48 -0.40 1.13 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -25.61 13.29 55.43 0.74 -24.88 16 16 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 C -0.15 -1.33 5.91 -25.03 -0.15 -1.47 16 21 C -0.12 -0.98 6.91 -24.70 -0.17 -1.15 16 22 C -0.12 -1.08 6.83 -25.07 -0.17 -1.25 16 23 C -0.11 -1.20 5.84 -25.61 -0.15 -1.35 16 24 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.03 0.28 6.41 -51.93 -0.33 -0.05 16 26 H 0.05 0.55 6.26 -51.93 -0.33 0.23 16 27 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.84 6.54 -51.93 -0.34 0.50 16 29 H 0.34 4.88 6.34 -39.29 -0.25 4.63 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.07 0.59 7.85 -51.93 -0.41 0.18 16 36 H 0.07 0.63 6.17 -51.93 -0.32 0.31 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.94 7.95 -51.93 -0.41 0.53 16 42 H 0.07 0.77 6.63 -51.93 -0.34 0.43 16 LS Contribution 338.14 15.07 5.10 5.10 Total: -1.00 -29.83 338.14 -7.11 -36.94 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -6.92 Total: -0.12 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -0.71 Total: -8.85 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.80 Total: -44.61 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -0.36 Total: -4.87 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.83 -7.11 -36.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573190941.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.306 kcal (2) G-P(sol) polarization free energy of solvation -29.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds