Wall clock time and date at job start Mon Mar 30 2020 00:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 113.99532 * 2 1 4 4 C 1.52997 * 110.01788 * 304.01325 * 3 2 1 5 5 N 1.46896 * 109.47070 * 301.39262 * 4 3 2 6 6 C 1.46907 * 111.00041 * 174.17623 * 5 4 3 7 7 C 1.52997 * 109.46963 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47675 * 55.00074 * 7 6 5 9 9 C 1.47205 * 109.47151 * 294.99563 * 7 6 5 10 10 N 6.10152 * 116.44919 * 285.42104 * 2 1 3 11 11 C 1.53003 * 109.46949 * 175.00207 * 7 6 5 12 12 C 1.50701 * 109.47198 * 184.99902 * 11 7 6 13 13 H 1.08005 * 119.99796 * 359.97438 * 12 11 7 14 14 C 1.37874 * 120.00147 * 179.72718 * 12 11 7 15 15 N 1.31516 * 120.00006 * 0.26971 * 14 12 11 16 16 Si 1.86802 * 120.00126 * 180.27665 * 14 12 11 17 17 H 1.48494 * 109.47354 * 89.99689 * 16 14 12 18 18 H 1.48505 * 109.47020 * 209.99654 * 16 14 12 19 19 H 1.48503 * 109.46775 * 329.99338 * 16 14 12 20 20 C 1.54263 * 110.03042 * 65.40555 * 3 2 1 21 21 C 1.54961 * 104.16397 * 95.75400 * 20 3 2 22 22 C 1.54891 * 102.77461 * 37.88338 * 21 20 3 23 23 C 1.53871 * 110.02912 * 182.62132 * 3 2 1 24 24 H 1.09006 * 109.46880 * 176.89696 * 1 2 3 25 25 H 1.08998 * 109.47531 * 296.89483 * 1 2 3 26 26 H 1.08996 * 109.47655 * 56.90028 * 1 2 3 27 27 H 1.08998 * 109.47332 * 181.38992 * 4 3 2 28 28 H 1.09004 * 109.47057 * 61.39440 * 4 3 2 29 29 H 1.00901 * 110.99921 * 298.13146 * 5 4 3 30 30 H 1.09000 * 109.46887 * 59.99750 * 6 5 4 31 31 H 1.09000 * 109.46924 * 299.99742 * 6 5 4 32 32 H 1.09002 * 109.47151 * 64.99677 * 11 7 6 33 33 H 1.08995 * 109.47076 * 304.99793 * 11 7 6 34 34 H 0.96996 * 120.00503 * 180.02562 * 15 14 12 35 35 H 1.08998 * 110.48775 * 214.40204 * 20 3 2 36 36 H 1.08999 * 110.49005 * 337.04021 * 20 3 2 37 37 H 1.09004 * 110.71935 * 279.57752 * 21 20 3 38 38 H 1.09000 * 110.76958 * 156.22271 * 21 20 3 39 39 H 1.08997 * 110.48932 * 203.40435 * 22 21 20 40 40 H 1.09003 * 110.48607 * 80.76545 * 22 21 20 41 41 H 1.08993 * 110.03398 * 359.95117 * 23 3 2 42 42 H 1.09003 * 110.03024 * 121.38889 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 1.4885 2.1111 -1.1916 5 7 1.8150 1.4072 -2.4390 6 6 1.2103 2.0797 -3.5967 7 6 1.5711 1.3190 -4.8741 8 1 1.2722 0.2757 -4.7726 9 6 3.0245 1.3938 -5.0958 10 7 4.1466 1.4526 -5.2662 11 6 0.8410 1.9452 -6.0640 12 6 1.0985 1.1232 -7.3006 13 1 1.7211 0.2424 -7.2435 14 6 0.5353 1.4925 -8.5036 15 7 -0.2224 2.5652 -8.5731 16 14 0.8482 0.4692 -10.0347 17 1 -0.1965 -0.5796 -10.1512 18 1 0.8057 1.3455 -11.2329 19 1 2.1843 -0.1715 -9.9373 20 6 1.6740 2.0336 1.3178 21 6 2.9103 1.7803 2.2170 22 6 4.0872 1.8679 1.2138 23 6 3.5438 1.1998 -0.0661 24 1 -0.3633 -1.0262 -0.0556 25 1 -0.3634 0.4648 0.9165 26 1 -0.3634 0.5612 -0.8608 27 1 1.9557 3.0958 -1.1970 28 1 0.4073 2.2224 -1.1095 29 1 2.8135 1.3184 -2.5533 30 1 1.5877 3.1002 -3.6620 31 1 0.1267 2.0998 -3.4800 32 1 1.2052 2.9606 -6.2203 33 1 -0.2296 1.9704 -5.8610 34 1 -0.6190 2.8249 -9.4193 35 1 1.5432 3.1012 1.1413 36 1 0.7783 1.6085 1.7708 37 1 2.8616 0.7899 2.6697 38 1 2.9965 2.5520 2.9820 39 1 4.9518 1.3222 1.5914 40 1 4.3467 2.9087 1.0201 41 1 3.8448 0.1527 -0.0973 42 1 3.9165 1.7224 -0.9471 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573190941.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:32 Heat of formation + Delta-G solvation = -58.651023 kcal Electronic energy + Delta-G solvation = -20394.558714 eV Core-core repulsion = 17373.030397 eV Total energy + Delta-G solvation = -3021.528317 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.71940 -38.71526 -36.51445 -36.35296 -35.35826 -33.34499 -30.14830 -29.82358 -28.18418 -27.17342 -25.11455 -23.75427 -23.55833 -21.47224 -20.38814 -18.60408 -18.25975 -17.91883 -16.85792 -16.65052 -16.37305 -16.02786 -15.50591 -15.28585 -14.90379 -14.66867 -14.48994 -14.24284 -13.95327 -13.93336 -13.55072 -13.22899 -13.05951 -12.78888 -12.60268 -12.56440 -12.50002 -12.31072 -12.19242 -12.01012 -11.96927 -11.82378 -11.45279 -11.41572 -11.27046 -11.16708 -10.55528 -10.22198 -9.35898 -8.20351 -6.28562 1.39931 1.41447 1.50841 1.91645 1.94267 2.40890 2.84167 3.14578 3.23530 3.30568 3.62225 3.66918 3.95637 4.12446 4.25202 4.33782 4.40975 4.47213 4.57300 4.58738 4.64167 4.69727 4.72787 4.81878 4.92393 4.93808 4.96826 5.00097 5.04482 5.06507 5.14490 5.21324 5.34456 5.45933 5.47462 5.61241 5.78265 5.98694 6.20376 6.26454 6.56392 6.73340 6.86026 7.40042 8.90558 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033528 B = 0.003698 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.921168 B = 7569.435741 C = 7888.094814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.385 6.385 3 C 0.117 3.883 4 C 0.034 3.966 5 N -0.685 5.685 6 C 0.079 3.921 7 C 0.019 3.981 8 H 0.120 0.880 9 C 0.251 3.749 10 N -0.504 5.504 11 C 0.039 3.961 12 C -0.540 4.540 13 H 0.052 0.948 14 C 0.012 3.988 15 N -0.923 5.923 16 Si 0.949 3.051 17 H -0.266 1.266 18 H -0.284 1.284 19 H -0.277 1.277 20 C -0.147 4.147 21 C -0.117 4.117 22 C -0.122 4.122 23 C -0.116 4.116 24 H 0.084 0.916 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.088 0.912 29 H 0.334 0.666 30 H 0.033 0.967 31 H 0.105 0.895 32 H 0.001 0.999 33 H 0.037 0.963 34 H 0.264 0.736 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.389 -0.377 22.512 22.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.304 6.304 3 C 0.077 3.923 4 C -0.095 4.095 5 N -0.316 5.316 6 C -0.051 4.051 7 C -0.003 4.003 8 H 0.138 0.862 9 C -0.065 4.065 10 N -0.182 5.182 11 C 0.001 3.999 12 C -0.578 4.578 13 H 0.071 0.929 14 C -0.187 4.187 15 N -0.563 5.563 16 Si 0.775 3.225 17 H -0.191 1.191 18 H -0.209 1.209 19 H -0.202 1.202 20 C -0.185 4.185 21 C -0.154 4.154 22 C -0.159 4.159 23 C -0.153 4.153 24 H 0.103 0.897 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.106 0.894 29 H 0.152 0.848 30 H 0.051 0.949 31 H 0.123 0.877 32 H 0.019 0.981 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.575 -0.810 22.196 22.267 hybrid contribution 0.093 0.545 -1.458 1.559 sum 1.668 -0.265 20.739 20.807 Atomic orbital electron populations 1.22825 0.80824 1.02996 1.00367 1.87954 1.20450 1.27155 1.94822 1.22219 0.93433 0.83413 0.93249 1.22668 1.02153 0.95288 0.89394 1.60463 1.16711 1.52881 1.01513 1.21934 1.01556 0.94439 0.87180 1.19227 0.80387 1.03967 0.96680 0.86214 1.29696 0.95356 0.90967 0.90508 1.81050 1.14595 1.11239 1.11291 1.18980 0.95885 0.94809 0.90263 1.21551 1.30234 1.11260 0.94783 0.92932 1.25705 0.94946 0.96149 1.01901 1.70026 1.33587 1.25692 1.26975 0.85688 0.78632 0.78957 0.79259 1.19142 1.20915 1.20162 1.22974 0.99537 1.01054 0.94905 1.22436 0.93583 1.02055 0.97331 1.22371 0.98431 1.00865 0.94268 1.22148 0.92785 1.01639 0.98775 0.89703 0.93110 0.93488 0.93752 0.89409 0.84818 0.94890 0.87725 0.98066 0.94492 0.92678 0.89818 0.90261 0.91675 0.89990 0.90893 0.90922 0.91566 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.31 113.37 1.17 1.66 16 2 O -0.38 -9.14 10.14 -148.98 -1.51 -10.65 16 3 C 0.12 2.34 0.77 -10.07 -0.01 2.34 16 4 C 0.03 0.72 3.84 86.30 0.33 1.05 16 5 N -0.68 -17.82 6.30 -513.89 -3.23 -21.06 16 6 C 0.08 2.26 5.11 86.30 0.44 2.70 16 7 C 0.02 0.70 2.42 -12.60 -0.03 0.67 16 8 H 0.12 4.21 8.14 -2.39 -0.02 4.19 16 9 C 0.25 10.20 12.98 89.44 1.16 11.36 16 10 N -0.50 -22.14 18.54 20.01 0.37 -21.77 16 11 C 0.04 1.83 4.42 29.85 0.13 1.96 16 12 C -0.54 -28.90 8.60 25.60 0.22 -28.68 16 13 H 0.05 2.80 7.59 -2.91 -0.02 2.78 16 14 C 0.01 0.66 5.46 84.65 0.46 1.12 16 15 N -0.92 -53.07 13.29 21.45 0.28 -52.79 16 16 Si 0.95 43.72 29.54 68.60 2.03 45.75 16 17 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 20 C -0.15 -2.24 5.91 31.69 0.19 -2.05 16 21 C -0.12 -1.65 6.91 31.91 0.22 -1.43 16 22 C -0.12 -1.92 6.83 31.67 0.22 -1.70 16 23 C -0.12 -2.38 5.84 31.32 0.18 -2.20 16 24 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 25 H 0.05 0.76 6.41 -2.39 -0.02 0.74 16 26 H 0.05 0.92 6.26 -2.39 -0.01 0.90 16 27 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.09 1.69 6.54 -2.38 -0.02 1.67 16 29 H 0.33 9.38 6.34 -89.69 -0.57 8.81 16 30 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 33 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 35 H 0.08 1.11 7.85 -2.39 -0.02 1.09 16 36 H 0.08 1.14 6.17 -2.39 -0.01 1.12 16 37 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.07 1.54 7.95 -2.39 -0.02 1.52 16 42 H 0.06 1.33 6.63 -2.39 -0.02 1.31 16 Total: -1.00 -62.56 338.14 3.05 -59.50 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.43 Total: 14.22 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: 4.69 Total: -13.20 kcal Atomic # 7 Polarization: -93.04 SS G_CDS: -2.58 Total: -95.62 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -1.51 Total: -10.65 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -62.56 3.05 -59.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573190941.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.852 kcal (2) G-P(sol) polarization free energy of solvation -62.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds