Wall clock time and date at job start Mon Mar 30 2020 00:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99736 * 2 1 4 4 C 1.53005 * 109.46877 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.46703 * 178.35286 * 4 3 2 6 6 C 1.52993 * 115.55377 * 294.83736 * 5 4 3 7 7 N 1.46894 * 109.47463 * 278.20864 * 6 5 4 8 8 C 1.46897 * 111.00199 * 174.36588 * 7 6 5 9 9 C 1.53002 * 109.47071 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47634 * 304.99853 * 9 8 7 11 11 C 1.47200 * 109.47120 * 65.00169 * 9 8 7 12 12 N 6.42377 * 126.31682 * 276.77706 * 2 1 3 13 13 C 1.53006 * 109.47041 * 184.99802 * 9 8 7 14 14 C 1.50702 * 109.46935 * 175.00245 * 13 9 8 15 15 H 1.07996 * 120.00213 * 359.97438 * 14 13 9 16 16 C 1.37876 * 119.99696 * 180.02562 * 14 13 9 17 17 N 1.31523 * 119.99860 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00325 * 359.97438 * 16 14 13 19 19 H 1.48493 * 109.46862 * 90.00284 * 18 16 14 20 20 H 1.48495 * 109.46987 * 210.00658 * 18 16 14 21 21 H 1.48502 * 109.46898 * 330.00499 * 18 16 14 22 22 C 1.53008 * 117.51569 * 80.54378 * 5 4 3 23 23 C 1.53005 * 117.49248 * 149.17037 * 5 4 3 24 24 H 1.08997 * 109.46944 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47816 * 300.00264 * 1 2 3 26 26 H 1.09004 * 109.46788 * 60.00654 * 1 2 3 27 27 H 1.09000 * 109.47653 * 59.99761 * 3 2 1 28 28 H 1.09005 * 109.46965 * 299.99363 * 3 2 1 29 29 H 1.08995 * 109.47069 * 58.35672 * 4 3 2 30 30 H 1.08994 * 109.47095 * 298.35084 * 4 3 2 31 31 H 1.09004 * 109.47169 * 158.20472 * 6 5 4 32 32 H 1.09007 * 109.46808 * 38.20579 * 6 5 4 33 33 H 1.00910 * 110.99922 * 298.31569 * 7 6 5 34 34 H 1.08996 * 109.47414 * 60.00035 * 8 7 6 35 35 H 1.08999 * 109.47023 * 299.99361 * 8 7 6 36 36 H 1.08997 * 109.46944 * 294.99923 * 13 9 8 37 37 H 1.08999 * 109.47129 * 55.00113 * 13 9 8 38 38 H 0.96993 * 119.99424 * 179.97438 * 17 16 14 39 39 H 1.08998 * 117.49421 * 214.96466 * 22 5 4 40 40 H 1.08995 * 117.49542 * 359.97438 * 22 5 4 41 41 H 1.08995 * 117.50150 * 359.97438 * 23 5 4 42 42 H 1.09005 * 117.49770 * 145.00108 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1576 2.5819 -0.0408 6 6 3.8940 3.3841 -1.3166 7 7 4.8395 2.9680 -2.3609 8 6 4.5314 3.6205 -3.6405 9 6 5.5356 3.1639 -4.7007 10 1 6.5489 3.3558 -4.3480 11 6 5.3668 1.7226 -4.9479 12 7 5.2335 0.6108 -5.1398 13 6 5.2927 3.9359 -5.9992 14 6 6.3569 3.5764 -7.0038 15 1 7.1294 2.8684 -6.7422 16 6 6.3449 4.1521 -8.2566 17 7 7.2740 3.8387 -9.1332 18 14 5.0092 5.3771 -8.7089 19 1 5.4552 6.7487 -8.3553 20 1 4.7436 5.3036 -10.1680 21 1 3.7669 5.0528 -7.9627 22 6 4.2439 3.3566 1.2758 23 6 5.5109 2.7731 0.6470 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.6885 1.8465 0.8899 28 1 1.6886 1.8463 -0.8901 29 1 3.8554 0.6184 -0.8740 30 1 3.8587 0.6697 0.9052 31 1 4.0240 4.4467 -1.1111 32 1 2.8743 3.2018 -1.6562 33 1 5.7914 3.1523 -2.0811 34 1 4.5957 4.7021 -3.5216 35 1 3.5233 3.3486 -3.9534 36 1 4.3128 3.6753 -6.3989 37 1 5.3300 5.0065 -5.7977 38 1 7.2652 4.2434 -10.0146 39 1 4.1128 4.4378 1.2329 40 1 3.8570 2.8711 2.1716 41 1 5.9577 1.9038 1.1294 42 1 6.2133 3.4706 0.1906 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576100803.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:52 Heat of formation + Delta-G solvation = -33.448760 kcal Electronic energy + Delta-G solvation = -19796.428155 eV Core-core repulsion = 16775.992690 eV Total energy + Delta-G solvation = -3020.435465 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.99021 -38.72365 -38.21701 -36.13970 -35.13289 -33.29324 -31.91056 -29.31795 -27.44415 -26.30888 -24.32188 -23.85466 -23.25471 -22.83534 -19.83107 -18.89234 -18.51412 -17.44496 -17.04121 -16.62328 -16.49357 -15.82921 -15.70847 -15.48981 -15.23252 -14.98928 -14.71925 -14.30761 -14.05453 -13.86122 -13.34926 -13.27454 -13.08528 -13.01313 -12.67558 -12.48236 -12.36651 -12.28377 -12.22451 -12.09243 -11.94277 -11.65790 -11.53613 -11.28824 -10.94366 -10.72507 -10.60340 -10.58104 -9.22458 -8.24211 -6.29877 1.42331 1.46065 1.56148 2.07756 2.15247 2.41535 2.66566 2.95660 3.12094 3.30195 3.43044 3.80495 3.91107 4.11203 4.13908 4.18374 4.34635 4.36454 4.37622 4.49584 4.52687 4.58759 4.70031 4.73022 4.82179 4.83712 4.88016 4.89296 4.94972 5.07131 5.12976 5.24336 5.27844 5.33118 5.34877 5.46732 5.64396 6.11571 6.25549 6.27656 6.57640 6.78080 6.93303 7.34630 8.92890 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021883 B = 0.003734 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.214197 B = 7495.915240 C = 7900.279777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.423 6.423 3 C 0.066 3.934 4 C -0.071 4.071 5 C -0.124 4.124 6 C 0.098 3.902 7 N -0.703 5.703 8 C 0.077 3.923 9 C 0.025 3.975 10 H 0.116 0.884 11 C 0.263 3.737 12 N -0.518 5.518 13 C -0.003 4.003 14 C -0.531 4.531 15 H 0.028 0.972 16 C 0.001 3.999 17 N -0.955 5.955 18 Si 0.950 3.050 19 H -0.255 1.255 20 H -0.296 1.296 21 H -0.238 1.238 22 C -0.158 4.158 23 C -0.169 4.169 24 H 0.092 0.908 25 H 0.056 0.944 26 H 0.044 0.956 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.349 0.651 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.025 0.975 37 H 0.064 0.936 38 H 0.265 0.735 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.259 4.579 24.019 27.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.343 6.343 3 C -0.010 4.010 4 C -0.108 4.108 5 C -0.125 4.125 6 C -0.031 4.031 7 N -0.336 5.336 8 C -0.053 4.053 9 C 0.003 3.997 10 H 0.134 0.866 11 C -0.054 4.054 12 N -0.196 5.196 13 C -0.042 4.042 14 C -0.569 4.569 15 H 0.046 0.954 16 C -0.195 4.195 17 N -0.596 5.596 18 Si 0.773 3.227 19 H -0.180 1.180 20 H -0.223 1.223 21 H -0.161 1.161 22 C -0.196 4.196 23 C -0.206 4.206 24 H 0.111 0.889 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.168 0.832 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.044 0.956 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.125 0.875 40 H 0.118 0.882 41 H 0.110 0.890 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.647 2.192 23.422 26.708 hybrid contribution 0.246 1.364 -0.807 1.603 sum -12.401 3.556 22.615 26.036 Atomic orbital electron populations 1.22895 0.79677 1.03610 1.00801 1.87837 1.21424 1.29465 1.95598 1.22561 0.93853 0.83943 1.00667 1.20832 0.92954 0.95127 1.01928 1.21225 1.01895 0.95767 0.93597 1.21455 0.96503 0.96191 0.88922 1.60289 1.07673 1.62864 1.02729 1.21923 0.97924 0.98000 0.87460 1.19083 1.02628 0.80559 0.97460 0.86597 1.29474 0.90854 0.95235 0.89799 1.81005 1.11399 1.15068 1.12129 1.19583 0.96171 0.97356 0.91048 1.21419 1.11812 1.25248 0.98468 0.95359 1.26067 0.98263 0.98978 0.96194 1.70098 1.36705 1.45917 1.06862 0.85664 0.80361 0.79519 0.77173 1.17987 1.22267 1.16117 1.23156 1.01034 1.00232 0.95160 1.23006 0.90761 1.03421 1.03442 0.88930 0.92585 0.93779 0.91834 0.93370 0.92939 0.91518 0.93031 0.91029 0.83205 0.90396 0.90808 0.95647 0.91797 0.92674 0.87500 0.88176 0.88986 0.88069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.42 -9.93 10.70 -148.98 -1.59 -11.52 16 3 C 0.07 1.28 5.82 71.98 0.42 1.70 16 4 C -0.07 -1.46 5.47 30.60 0.17 -1.30 16 5 C -0.12 -2.06 1.74 -52.18 -0.09 -2.15 16 6 C 0.10 1.70 5.58 86.30 0.48 2.18 16 7 N -0.70 -15.43 6.17 -513.91 -3.17 -18.60 16 8 C 0.08 1.83 5.04 86.30 0.43 2.27 16 9 C 0.02 0.82 2.35 -12.60 -0.03 0.79 16 10 H 0.12 3.60 8.14 -2.39 -0.02 3.58 16 11 C 0.26 10.95 13.67 89.44 1.22 12.17 16 12 N -0.52 -24.46 18.54 20.01 0.37 -24.09 16 13 C 0.00 -0.10 3.49 29.85 0.10 0.00 16 14 C -0.53 -28.80 9.15 25.60 0.23 -28.57 16 15 H 0.03 1.74 7.84 -2.91 -0.02 1.71 16 16 C 0.00 0.08 5.47 84.65 0.46 0.55 16 17 N -0.96 -59.42 13.96 21.45 0.30 -59.12 16 18 Si 0.95 41.45 27.47 68.60 1.88 43.33 16 19 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 20 H -0.30 -13.29 7.11 99.48 0.71 -12.58 16 21 H -0.24 -9.31 6.54 99.48 0.65 -8.66 16 22 C -0.16 -1.94 9.90 30.60 0.30 -1.64 16 23 C -0.17 -2.49 9.56 30.60 0.29 -2.20 16 24 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.05 0.94 6.68 -2.38 -0.02 0.93 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 1.33 8.09 -2.39 -0.02 1.31 16 31 H 0.05 0.72 7.93 -2.39 -0.02 0.70 16 32 H 0.07 1.31 6.54 -2.38 -0.02 1.30 16 33 H 0.35 6.90 8.23 -89.69 -0.74 6.16 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.03 1.03 7.20 -2.39 -0.02 1.02 16 37 H 0.06 2.23 7.57 -2.39 -0.02 2.21 16 38 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 39 H 0.11 1.07 8.07 -2.39 -0.02 1.05 16 40 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.10 1.37 7.95 -2.38 -0.02 1.35 16 Total: -1.00 -72.00 351.66 3.23 -68.77 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.20 Total: 15.76 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: 5.25 Total: -14.53 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -2.50 Total: -101.81 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -1.59 Total: -11.52 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 1.88 Total: 43.33 kcal Total: -72.00 3.23 -68.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576100803.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.318 kcal (2) G-P(sol) polarization free energy of solvation -72.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds