Wall clock time and date at job start Mon Mar 30 2020 00:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99927 * 2 1 4 4 H 1.48498 * 109.47041 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47116 * 300.00094 * 3 2 1 6 6 H 1.48498 * 109.47288 * 59.99693 * 3 2 1 7 7 C 1.37870 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00287 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00012 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47251 * 180.02562 * 9 7 2 11 11 C 1.53119 * 109.52148 * 175.00206 * 10 9 7 12 12 C 1.53035 * 109.27652 * 177.55676 * 11 10 9 13 13 N 1.46840 * 109.52507 * 300.81967 * 12 11 10 14 14 C 1.46901 * 110.99993 * 185.83899 * 13 12 11 15 15 C 1.53006 * 109.47113 * 170.00243 * 14 13 12 16 16 H 1.08993 * 109.50406 * 55.07915 * 15 14 13 17 17 C 1.53118 * 109.50158 * 175.19889 * 15 14 13 18 18 C 1.53124 * 109.16102 * 177.59454 * 17 15 14 19 19 C 1.53044 * 109.27485 * 302.34647 * 18 17 15 20 20 N 1.46842 * 109.52424 * 59.17499 * 19 18 17 21 21 C 1.46842 * 111.20101 * 298.25581 * 20 19 18 22 22 C 1.46848 * 111.19941 * 61.74262 * 13 12 11 23 23 C 1.53032 * 109.52140 * 298.25870 * 22 13 12 24 24 H 0.97008 * 120.00293 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46784 * 60.00180 * 9 7 2 26 26 H 1.09004 * 109.46866 * 300.00420 * 9 7 2 27 27 H 1.08996 * 109.57582 * 54.84314 * 10 9 7 28 28 H 1.09000 * 109.50465 * 57.61551 * 11 10 9 29 29 H 1.09004 * 109.53410 * 297.51813 * 11 10 9 30 30 H 1.09001 * 109.46137 * 180.80291 * 12 11 10 31 31 H 1.09000 * 109.45555 * 60.83543 * 12 11 10 32 32 H 1.09000 * 109.47283 * 49.99915 * 14 13 12 33 33 H 1.09007 * 109.47373 * 289.99928 * 14 13 12 34 34 H 1.08997 * 109.52257 * 297.49260 * 17 15 14 35 35 H 1.08998 * 109.52836 * 57.68735 * 17 15 14 36 36 H 1.08991 * 109.50857 * 182.40206 * 18 17 15 37 37 H 1.08998 * 109.53329 * 62.30158 * 18 17 15 38 38 H 1.08999 * 109.45900 * 299.15732 * 19 18 17 39 39 H 1.09001 * 109.46076 * 179.19832 * 19 18 17 40 40 H 1.00904 * 110.99829 * 174.15966 * 20 19 18 41 41 H 1.08992 * 109.46494 * 301.73071 * 21 20 19 42 42 H 1.09001 * 109.46134 * 181.75823 * 21 20 19 43 43 H 1.09003 * 109.45995 * 58.27275 * 22 13 12 44 44 H 1.09000 * 109.46372 * 178.24402 * 22 13 12 45 45 H 1.08998 * 109.50257 * 299.23637 * 23 22 13 46 46 H 1.09001 * 109.53953 * 179.13814 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4850 -4.9852 0.1252 12 6 2.4792 -6.1470 0.0633 13 7 3.2097 -6.1006 -1.2097 14 6 4.0737 -7.2785 -1.3641 15 6 4.6225 -7.3249 -2.7916 16 1 5.1263 -6.3854 -3.0185 17 6 5.6161 -8.4828 -2.9199 18 6 6.1148 -8.5593 -4.3657 19 6 4.9186 -8.7356 -5.3039 20 7 3.9982 -7.6027 -5.1439 21 6 3.4696 -7.5371 -3.7755 22 6 3.9851 -4.8595 -1.3321 23 6 3.0358 -3.6593 -1.3119 24 1 -0.4851 0.8401 -0.0004 25 1 0.6241 -2.5566 -0.8903 26 1 0.6247 -2.5570 0.8897 27 1 2.9321 -3.5553 0.8391 28 1 0.7706 -5.0736 -0.6933 29 1 0.9536 -5.0112 1.0766 30 1 1.9397 -7.0911 0.1382 31 1 3.1848 -6.0654 0.8901 32 1 3.4956 -8.1815 -1.1676 33 1 4.9020 -7.2167 -0.6583 34 1 6.4606 -8.3137 -2.2519 35 1 5.1224 -9.4177 -2.6549 36 1 6.7900 -9.4081 -4.4734 37 1 6.6429 -7.6398 -4.6182 38 1 4.3995 -9.6626 -5.0603 39 1 5.2690 -8.7762 -6.3353 40 1 3.2495 -7.6469 -5.8190 41 1 2.9573 -8.4696 -3.5390 42 1 2.7675 -6.7070 -3.6968 43 1 4.6837 -4.7841 -0.4987 44 1 4.5392 -4.8685 -2.2707 45 1 2.3458 -3.7269 -2.1529 46 1 3.6123 -2.7373 -1.3873 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579592771.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:11 Heat of formation + Delta-G solvation = -28.118868 kcal Electronic energy + Delta-G solvation = -21046.730844 eV Core-core repulsion = 18162.359596 eV Total energy + Delta-G solvation = -2884.371249 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.41957 -38.03443 -34.74320 -32.76481 -31.96183 -30.97208 -30.25143 -27.86503 -25.30942 -23.81710 -23.41824 -22.71891 -21.41512 -20.46978 -19.53544 -18.84248 -16.57853 -16.20720 -15.65406 -15.13919 -14.66519 -14.47671 -14.39518 -13.94205 -13.67436 -13.47187 -13.16548 -13.12854 -12.79225 -12.37822 -12.12822 -12.04196 -11.72467 -11.51367 -11.19842 -11.07330 -10.76963 -10.75183 -10.59853 -10.49842 -10.45961 -10.33898 -10.16746 -9.85934 -9.46268 -8.97993 -8.81839 -8.53811 -8.28983 -8.00904 -5.93748 -3.94891 3.34311 3.41934 3.45772 4.08383 4.10982 4.50908 4.70265 4.73890 4.85281 4.96991 5.21009 5.31463 5.35964 5.41057 5.43112 5.50507 5.53159 5.57831 5.61306 5.72540 5.76163 5.80966 5.82744 5.89610 5.94536 5.96159 6.06563 6.19384 6.25925 6.27125 6.40342 6.51293 6.64675 6.74041 6.95696 7.04920 7.16986 7.25856 7.28080 7.41964 7.46701 7.75286 7.92153 8.07507 8.50933 9.12001 9.68516 11.17655 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.028863 B = 0.003758 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.863870 B = 7449.419712 C = 7813.810669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.028 3.972 10 C -0.081 4.081 11 C -0.111 4.111 12 C 0.060 3.940 13 N -0.534 5.534 14 C 0.060 3.940 15 C -0.081 4.081 16 H 0.081 0.919 17 C -0.117 4.117 18 C -0.116 4.116 19 C 0.057 3.943 20 N -0.693 5.693 21 C 0.072 3.928 22 C 0.054 3.946 23 C -0.099 4.099 24 H 0.258 0.742 25 H 0.017 0.983 26 H 0.013 0.987 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.026 0.974 32 H 0.067 0.933 33 H 0.030 0.970 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.025 0.975 39 H 0.069 0.931 40 H 0.342 0.658 41 H 0.023 0.977 42 H 0.090 0.910 43 H 0.024 0.976 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.376 -18.878 -6.690 22.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.551 4.551 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.100 4.100 11 C -0.149 4.149 12 C -0.068 4.068 13 N -0.258 5.258 14 C -0.069 4.069 15 C -0.100 4.100 16 H 0.100 0.900 17 C -0.155 4.155 18 C -0.154 4.154 19 C -0.072 4.072 20 N -0.324 5.324 21 C -0.057 4.057 22 C -0.074 4.074 23 C -0.136 4.136 24 H 0.068 0.932 25 H 0.035 0.965 26 H 0.031 0.969 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.048 0.952 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.044 0.956 39 H 0.088 0.912 40 H 0.159 0.841 41 H 0.041 0.959 42 H 0.109 0.891 43 H 0.043 0.957 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.381 -18.317 -6.939 21.717 hybrid contribution 0.386 0.199 0.717 0.838 sum 9.768 -18.117 -6.222 21.502 Atomic orbital electron populations 1.69979 1.06016 1.26289 1.51349 1.25017 0.94795 0.99122 0.95598 0.86604 0.80160 0.84149 0.77499 1.19793 1.21084 1.21159 1.21303 0.92962 0.91044 1.49768 0.92671 1.19120 0.93636 0.91098 0.97062 1.21233 0.97855 0.94724 0.96192 1.21681 0.97521 0.94325 1.01366 1.22088 0.96275 0.99243 0.89184 1.61932 1.27954 1.01754 1.34204 1.22102 0.95238 0.93938 0.95594 1.21209 0.95735 0.99162 0.93932 0.90036 1.21614 0.98812 0.98417 0.96636 1.21561 0.97130 1.02053 0.94686 1.21901 0.94251 0.91572 0.99492 1.60253 1.21975 1.44401 1.05756 1.21876 0.96204 1.00673 0.86964 1.22256 0.95318 0.89961 0.99837 1.21531 0.97836 0.95549 0.98714 0.93194 0.96509 0.96856 0.93172 0.91659 0.92289 0.91865 0.95579 0.91407 0.95157 0.92007 0.92438 0.91911 0.91161 0.95646 0.91208 0.84065 0.95876 0.89131 0.95735 0.91208 0.91906 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.51 -14.45 8.44 -34.44 -0.29 -14.74 16 8 H 0.06 1.52 7.08 -52.49 -0.37 1.15 16 9 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 10 C -0.08 -1.68 2.20 -90.50 -0.20 -1.88 16 11 C -0.11 -1.95 5.38 -26.65 -0.14 -2.09 16 12 C 0.06 0.88 5.46 -3.84 -0.02 0.86 16 13 N -0.53 -7.68 4.13 -234.67 -0.97 -8.65 16 14 C 0.06 0.71 4.35 -3.82 -0.02 0.70 16 15 C -0.08 -0.90 2.27 -90.53 -0.21 -1.11 16 16 H 0.08 1.04 6.22 -51.93 -0.32 0.72 16 17 C -0.12 -1.09 5.29 -26.61 -0.14 -1.23 16 18 C -0.12 -1.02 6.09 -26.64 -0.16 -1.18 16 19 C 0.06 0.51 6.55 -3.83 -0.03 0.48 16 20 N -0.69 -7.23 6.84 -113.82 -0.78 -8.01 16 21 C 0.07 0.81 5.71 -3.83 -0.02 0.79 16 22 C 0.05 0.84 5.30 -3.84 -0.02 0.82 16 23 C -0.10 -1.88 5.15 -26.65 -0.14 -2.02 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.83 8.02 -51.93 -0.42 0.41 16 31 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.76 7.99 -51.93 -0.41 0.34 16 33 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.34 3.10 8.90 -39.29 -0.35 2.75 16 41 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 42 H 0.09 1.20 7.78 -51.93 -0.40 0.79 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 1.03 6.12 -51.93 -0.32 0.72 16 45 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.07 1.46 7.05 -51.93 -0.37 1.10 16 LS Contribution 344.95 15.07 5.20 5.20 Total: -1.00 -29.62 344.95 -11.30 -40.92 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -8.86 Total: -1.32 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -1.61 Total: -18.51 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: -1.01 Total: -43.13 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.62 -11.30 -40.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579592771.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.800 kcal (2) G-P(sol) polarization free energy of solvation -29.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds