Wall clock time and date at job start Mon Mar 30 2020 00:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99927 * 2 1 4 4 H 1.48498 * 109.47041 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47116 * 300.00094 * 3 2 1 6 6 H 1.48498 * 109.47288 * 59.99693 * 3 2 1 7 7 C 1.37870 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00287 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00012 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47251 * 180.02562 * 9 7 2 11 11 C 1.53119 * 109.52148 * 175.00206 * 10 9 7 12 12 C 1.53035 * 109.27652 * 177.55676 * 11 10 9 13 13 N 1.46840 * 109.52507 * 300.81967 * 12 11 10 14 14 C 1.46901 * 110.99993 * 185.83899 * 13 12 11 15 15 C 1.53006 * 109.47113 * 170.00243 * 14 13 12 16 16 H 1.08993 * 109.50406 * 55.07915 * 15 14 13 17 17 C 1.53118 * 109.50158 * 175.19889 * 15 14 13 18 18 C 1.53124 * 109.16102 * 177.59454 * 17 15 14 19 19 C 1.53044 * 109.27485 * 302.34647 * 18 17 15 20 20 N 1.46842 * 109.52424 * 59.17499 * 19 18 17 21 21 C 1.46842 * 111.20101 * 298.25581 * 20 19 18 22 22 C 1.46848 * 111.19941 * 61.74262 * 13 12 11 23 23 C 1.53032 * 109.52140 * 298.25870 * 22 13 12 24 24 H 0.97008 * 120.00293 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46784 * 60.00180 * 9 7 2 26 26 H 1.09004 * 109.46866 * 300.00420 * 9 7 2 27 27 H 1.08996 * 109.57582 * 54.84314 * 10 9 7 28 28 H 1.09000 * 109.50465 * 57.61551 * 11 10 9 29 29 H 1.09004 * 109.53410 * 297.51813 * 11 10 9 30 30 H 1.09001 * 109.46137 * 180.80291 * 12 11 10 31 31 H 1.09000 * 109.45555 * 60.83543 * 12 11 10 32 32 H 1.09000 * 109.47283 * 49.99915 * 14 13 12 33 33 H 1.09007 * 109.47373 * 289.99928 * 14 13 12 34 34 H 1.08997 * 109.52257 * 297.49260 * 17 15 14 35 35 H 1.08998 * 109.52836 * 57.68735 * 17 15 14 36 36 H 1.08991 * 109.50857 * 182.40206 * 18 17 15 37 37 H 1.08998 * 109.53329 * 62.30158 * 18 17 15 38 38 H 1.08999 * 109.45900 * 299.15732 * 19 18 17 39 39 H 1.09001 * 109.46076 * 179.19832 * 19 18 17 40 40 H 1.00904 * 110.99829 * 174.15966 * 20 19 18 41 41 H 1.08992 * 109.46494 * 301.73071 * 21 20 19 42 42 H 1.09001 * 109.46134 * 181.75823 * 21 20 19 43 43 H 1.09003 * 109.45995 * 58.27275 * 22 13 12 44 44 H 1.09000 * 109.46372 * 178.24402 * 22 13 12 45 45 H 1.08998 * 109.50257 * 299.23637 * 23 22 13 46 46 H 1.09001 * 109.53953 * 179.13814 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4850 -4.9852 0.1252 12 6 2.4792 -6.1470 0.0633 13 7 3.2097 -6.1006 -1.2097 14 6 4.0737 -7.2785 -1.3641 15 6 4.6225 -7.3249 -2.7916 16 1 5.1263 -6.3854 -3.0185 17 6 5.6161 -8.4828 -2.9199 18 6 6.1148 -8.5593 -4.3657 19 6 4.9186 -8.7356 -5.3039 20 7 3.9982 -7.6027 -5.1439 21 6 3.4696 -7.5371 -3.7755 22 6 3.9851 -4.8595 -1.3321 23 6 3.0358 -3.6593 -1.3119 24 1 -0.4851 0.8401 -0.0004 25 1 0.6241 -2.5566 -0.8903 26 1 0.6247 -2.5570 0.8897 27 1 2.9321 -3.5553 0.8391 28 1 0.7706 -5.0736 -0.6933 29 1 0.9536 -5.0112 1.0766 30 1 1.9397 -7.0911 0.1382 31 1 3.1848 -6.0654 0.8901 32 1 3.4956 -8.1815 -1.1676 33 1 4.9020 -7.2167 -0.6583 34 1 6.4606 -8.3137 -2.2519 35 1 5.1224 -9.4177 -2.6549 36 1 6.7900 -9.4081 -4.4734 37 1 6.6429 -7.6398 -4.6182 38 1 4.3995 -9.6626 -5.0603 39 1 5.2690 -8.7762 -6.3353 40 1 3.2495 -7.6469 -5.8190 41 1 2.9573 -8.4696 -3.5390 42 1 2.7675 -6.7070 -3.6968 43 1 4.6837 -4.7841 -0.4987 44 1 4.5392 -4.8685 -2.2707 45 1 2.3458 -3.7269 -2.1529 46 1 3.6123 -2.7373 -1.3873 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579592771.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:10 Heat of formation + Delta-G solvation = -46.667289 kcal Electronic energy + Delta-G solvation = -21047.535164 eV Core-core repulsion = 18162.359596 eV Total energy + Delta-G solvation = -2885.175569 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.49542 -39.12847 -36.25698 -34.50811 -33.04284 -32.07944 -31.58424 -29.57061 -26.70444 -24.98592 -24.60065 -24.07822 -22.66768 -21.74136 -20.45815 -20.33160 -18.42221 -17.36961 -16.91463 -16.44749 -16.13175 -15.60662 -15.36815 -15.08790 -14.89935 -14.70791 -14.66131 -14.31375 -13.93163 -13.58488 -13.54145 -13.29349 -13.20746 -12.88933 -12.66472 -12.56383 -12.43309 -12.13031 -11.99549 -11.86737 -11.70438 -11.51049 -11.25748 -11.20470 -11.15780 -10.79605 -10.66189 -10.51092 -9.31774 -9.15698 -8.16887 -6.26387 1.39334 1.39836 1.52804 2.42130 2.98418 3.16259 3.33542 3.91137 3.92171 4.00970 4.08665 4.11273 4.14483 4.23115 4.37511 4.46987 4.51512 4.60219 4.65967 4.69893 4.74620 4.76482 4.81103 4.86752 4.90730 4.96470 4.98099 5.07309 5.11089 5.14167 5.18798 5.24453 5.39148 5.41632 5.44601 5.47492 5.53421 5.59171 5.82402 5.90531 6.17101 6.23078 6.28027 6.32914 6.54647 6.89920 7.41984 8.95262 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.028863 B = 0.003758 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.863870 B = 7449.419712 C = 7813.810669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.960 3.040 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.034 3.966 10 C -0.075 4.075 11 C -0.106 4.106 12 C 0.067 3.933 13 N -0.541 5.541 14 C 0.064 3.936 15 C -0.077 4.077 16 H 0.064 0.936 17 C -0.113 4.113 18 C -0.116 4.116 19 C 0.056 3.944 20 N -0.705 5.705 21 C 0.077 3.923 22 C 0.067 3.933 23 C -0.092 4.092 24 H 0.262 0.738 25 H -0.013 1.013 26 H -0.015 1.015 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.031 0.969 32 H 0.082 0.918 33 H 0.037 0.963 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.031 0.969 39 H 0.080 0.920 40 H 0.347 0.653 41 H 0.027 0.973 42 H 0.067 0.933 43 H 0.027 0.973 44 H 0.080 0.920 45 H 0.047 0.953 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.264 -20.371 -6.868 24.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.785 3.215 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.003 4.003 10 C -0.093 4.093 11 C -0.144 4.144 12 C -0.061 4.061 13 N -0.266 5.266 14 C -0.064 4.064 15 C -0.097 4.097 16 H 0.082 0.918 17 C -0.151 4.151 18 C -0.154 4.154 19 C -0.073 4.073 20 N -0.337 5.337 21 C -0.052 4.052 22 C -0.061 4.061 23 C -0.130 4.130 24 H 0.070 0.930 25 H 0.006 0.994 26 H 0.004 0.996 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.049 0.951 32 H 0.100 0.900 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.050 0.950 39 H 0.098 0.902 40 H 0.166 0.834 41 H 0.045 0.955 42 H 0.085 0.915 43 H 0.046 0.954 44 H 0.098 0.902 45 H 0.066 0.934 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.282 -19.829 -7.122 23.900 hybrid contribution -0.254 0.653 0.745 1.022 sum 11.029 -19.176 -6.377 23.022 Atomic orbital electron populations 1.70113 1.07776 1.27468 1.52294 1.25955 0.95708 1.03216 0.95099 0.85465 0.79168 0.79150 0.77687 1.18584 1.20502 1.20486 1.21682 0.93347 0.92176 1.49448 0.92268 1.19007 0.93998 0.93079 0.94213 1.21086 0.96879 0.94423 0.96944 1.21588 0.97849 0.93879 1.01085 1.22009 0.95792 0.98725 0.89525 1.61887 1.28569 1.02084 1.34071 1.22147 0.95142 0.92984 0.96128 1.21156 0.95897 0.99221 0.93387 0.91808 1.21588 0.98493 0.97792 0.97208 1.21577 0.97265 1.02313 0.94237 1.21972 0.93953 0.91121 1.00250 1.60252 1.22501 1.45531 1.05419 1.21742 0.95909 0.99845 0.87738 1.22038 0.94328 0.89160 1.00542 1.21392 0.97797 0.96742 0.97078 0.92955 0.99427 0.99627 0.93562 0.92699 0.92087 0.89350 0.95071 0.89986 0.94527 0.91381 0.91560 0.90025 0.92296 0.95049 0.90167 0.83448 0.95462 0.91497 0.95445 0.90176 0.93407 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.27 13.29 21.44 0.28 -57.98 16 2 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 3 Si 0.96 45.25 29.54 68.60 2.03 47.28 16 4 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 7 C -0.53 -30.55 8.44 25.60 0.22 -30.34 16 8 H 0.06 3.30 7.08 -2.91 -0.02 3.28 16 9 C 0.03 1.85 4.45 29.85 0.13 1.98 16 10 C -0.07 -3.16 2.20 -10.71 -0.02 -3.18 16 11 C -0.11 -3.72 5.38 30.65 0.16 -3.56 16 12 C 0.07 1.85 5.46 86.33 0.47 2.32 16 13 N -0.54 -14.69 4.13 -896.36 -3.70 -18.39 16 14 C 0.06 1.35 4.35 86.31 0.38 1.73 16 15 C -0.08 -1.57 2.27 -10.74 -0.02 -1.60 16 16 H 0.06 1.54 6.22 -2.39 -0.01 1.52 16 17 C -0.11 -1.80 5.29 30.67 0.16 -1.63 16 18 C -0.12 -1.75 6.09 30.65 0.19 -1.56 16 19 C 0.06 0.87 6.55 86.33 0.57 1.44 16 20 N -0.71 -13.77 6.84 -514.02 -3.52 -17.29 16 21 C 0.08 1.64 5.71 86.33 0.49 2.13 16 22 C 0.07 2.04 5.30 86.32 0.46 2.50 16 23 C -0.09 -3.58 5.15 30.65 0.16 -3.43 16 24 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 25 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 26 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 27 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 30 H 0.09 2.05 8.02 -2.39 -0.02 2.03 16 31 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 1.54 7.99 -2.39 -0.02 1.52 16 33 H 0.04 0.75 8.12 -2.38 -0.02 0.73 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.35 5.94 8.90 -89.69 -0.80 5.14 16 41 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.07 1.74 7.78 -2.39 -0.02 1.72 16 43 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.08 2.30 6.12 -2.39 -0.01 2.29 16 45 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.05 2.23 7.05 -2.39 -0.02 2.21 16 Total: -1.00 -64.76 344.95 -0.99 -65.75 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.12 Total: 13.52 kcal Atomic # 6 Polarization: -36.69 SS G_CDS: 3.80 Total: -32.89 kcal Atomic # 7 Polarization: -86.73 SS G_CDS: -6.93 Total: -93.66 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -64.76 -0.99 -65.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579592771.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.083 kcal (2) G-P(sol) polarization free energy of solvation -64.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds