Wall clock time and date at job start Mon Mar 30 2020 00:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00540 * 2 1 4 4 H 1.48496 * 109.47032 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46966 * 300.00321 * 3 2 1 6 6 H 1.48497 * 109.46951 * 59.99742 * 3 2 1 7 7 C 1.37878 * 119.99449 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99811 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00069 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46650 * 179.97438 * 9 7 2 11 11 C 1.53126 * 109.51750 * 184.99632 * 10 9 7 12 12 C 1.53040 * 109.27474 * 182.44319 * 11 10 9 13 13 N 1.46842 * 109.52807 * 59.18102 * 12 11 10 14 14 C 1.46900 * 111.00258 * 174.15947 * 13 12 11 15 15 C 1.53000 * 109.47055 * 176.21917 * 14 13 12 16 16 H 1.08998 * 109.50316 * 302.01080 * 15 14 13 17 17 C 1.53119 * 109.50348 * 181.92998 * 15 14 13 18 18 C 1.53113 * 109.16281 * 182.36820 * 17 15 14 19 19 C 1.53044 * 109.28114 * 57.65302 * 18 17 15 20 20 N 1.46846 * 109.52212 * 300.82230 * 19 18 17 21 21 C 1.46853 * 111.19760 * 61.74245 * 20 19 18 22 22 C 1.46848 * 111.19720 * 298.25848 * 13 12 11 23 23 C 1.53039 * 109.52239 * 61.74019 * 22 13 12 24 24 H 0.97003 * 119.99581 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.46972 * 60.00007 * 9 7 2 26 26 H 1.09000 * 109.46753 * 299.99401 * 9 7 2 27 27 H 1.08996 * 109.52471 * 305.12426 * 10 9 7 28 28 H 1.09002 * 109.50307 * 62.50033 * 11 10 9 29 29 H 1.09000 * 109.50601 * 302.38253 * 11 10 9 30 30 H 1.08999 * 109.46214 * 299.16380 * 12 11 10 31 31 H 1.09003 * 109.45096 * 179.19388 * 12 11 10 32 32 H 1.08994 * 109.47168 * 56.22009 * 14 13 12 33 33 H 1.09003 * 109.46814 * 296.21928 * 14 13 12 34 34 H 1.08992 * 109.52192 * 62.45837 * 17 15 14 35 35 H 1.09000 * 109.52231 * 302.27275 * 17 15 14 36 36 H 1.09008 * 109.50263 * 297.71399 * 18 17 15 37 37 H 1.08993 * 109.53958 * 177.61257 * 18 17 15 38 38 H 1.08994 * 109.46227 * 180.80988 * 19 18 17 39 39 H 1.09000 * 109.45305 * 60.82737 * 19 18 17 40 40 H 1.00900 * 111.00277 * 185.83322 * 20 19 18 41 41 H 1.08996 * 109.46564 * 58.26828 * 21 20 19 42 42 H 1.09002 * 109.46349 * 178.24006 * 21 20 19 43 43 H 1.08994 * 109.46237 * 181.75410 * 22 13 12 44 44 H 1.08996 * 109.46290 * 301.72449 * 22 13 12 45 45 H 1.09006 * 109.50180 * 180.88395 * 23 22 13 46 46 H 1.09001 * 109.53840 * 60.78174 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3461 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4847 -4.9853 -0.1252 12 6 2.4788 -6.1471 -0.0633 13 7 3.2093 -6.1008 1.2097 14 6 4.0733 -7.2788 1.3641 15 6 4.8864 -7.1494 2.6537 16 1 5.4752 -6.2327 2.6222 17 6 5.8221 -8.3536 2.7911 18 6 6.5887 -8.2463 4.1121 19 6 5.5913 -8.1718 5.2705 20 7 4.7198 -7.0033 5.0933 21 6 3.9382 -7.1068 3.8544 22 6 3.9848 -4.8598 1.3320 23 6 3.0356 -3.6595 1.3119 24 1 -0.4850 0.8401 0.0004 25 1 0.6245 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8904 27 1 2.9310 -3.5549 -0.8397 28 1 0.9537 -5.0109 -1.0768 29 1 0.7703 -5.0737 0.6933 30 1 3.1845 -6.0657 -0.8901 31 1 1.9390 -7.0912 -0.1381 32 1 4.7506 -7.3468 0.5129 33 1 3.4577 -8.1771 1.4113 34 1 6.5276 -8.3633 1.9603 35 1 5.2364 -9.2728 2.7834 36 1 7.2044 -7.3467 4.1036 37 1 7.2256 -9.1220 4.2362 38 1 6.1337 -8.0809 6.2115 39 1 4.9853 -9.0777 5.2866 40 1 4.1162 -6.8779 5.8921 41 1 3.3401 -8.0177 3.8772 42 1 3.2800 -6.2423 3.7668 43 1 4.5389 -4.8688 2.2706 44 1 4.6833 -4.7844 0.4987 45 1 3.6128 -2.7378 1.3869 46 1 2.3455 -3.7263 2.1530 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579592772.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:13 Heat of formation + Delta-G solvation = -25.807352 kcal Electronic energy + Delta-G solvation = -21117.025182 eV Core-core repulsion = 18232.754168 eV Total energy + Delta-G solvation = -2884.271014 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.51518 -37.99223 -34.75877 -32.76096 -31.97068 -31.00181 -30.17438 -27.88402 -25.31655 -23.86249 -23.42515 -22.72786 -21.41265 -20.48806 -19.48537 -18.81471 -16.57602 -16.20572 -15.68647 -15.13192 -14.67527 -14.49647 -14.40080 -13.98901 -13.66197 -13.50246 -13.15756 -13.07184 -12.77099 -12.47030 -12.06670 -12.01075 -11.75683 -11.46965 -11.20687 -11.08409 -10.77450 -10.73512 -10.58269 -10.50671 -10.45142 -10.35756 -10.17209 -9.84587 -9.44925 -8.96833 -8.81458 -8.54430 -8.28731 -8.00117 -5.93595 -3.94658 3.34486 3.42095 3.46039 4.09218 4.10891 4.51135 4.68608 4.73327 4.83250 4.97608 5.18376 5.31286 5.36597 5.41501 5.44143 5.49730 5.53310 5.57683 5.60833 5.72056 5.76215 5.80719 5.82845 5.89455 5.94060 5.97282 6.07172 6.20023 6.24355 6.27189 6.39800 6.51310 6.64769 6.74714 6.94731 7.05327 7.17235 7.26133 7.27701 7.42082 7.47122 7.75566 7.92407 8.07746 8.51208 9.12263 9.68715 11.17838 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.027145 B = 0.003906 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.264767 B = 7167.626555 C = 7686.218644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.028 3.972 10 C -0.082 4.082 11 C -0.111 4.111 12 C 0.060 3.940 13 N -0.534 5.534 14 C 0.060 3.940 15 C -0.086 4.086 16 H 0.083 0.917 17 C -0.116 4.116 18 C -0.117 4.117 19 C 0.057 3.943 20 N -0.693 5.693 21 C 0.071 3.929 22 C 0.049 3.951 23 C -0.098 4.098 24 H 0.258 0.742 25 H 0.013 0.987 26 H 0.016 0.984 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.026 0.974 31 H 0.063 0.937 32 H 0.029 0.971 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.026 0.974 40 H 0.342 0.658 41 H 0.025 0.975 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.024 0.976 45 H 0.071 0.929 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.085 -18.279 6.845 21.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.100 4.100 11 C -0.149 4.149 12 C -0.068 4.068 13 N -0.259 5.259 14 C -0.068 4.068 15 C -0.105 4.105 16 H 0.101 0.899 17 C -0.154 4.154 18 C -0.154 4.154 19 C -0.072 4.072 20 N -0.324 5.324 21 C -0.058 4.058 22 C -0.078 4.078 23 C -0.136 4.136 24 H 0.068 0.932 25 H 0.031 0.969 26 H 0.035 0.965 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.044 0.956 40 H 0.160 0.840 41 H 0.043 0.957 42 H 0.109 0.891 43 H 0.093 0.907 44 H 0.042 0.958 45 H 0.090 0.910 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.081 -17.787 6.931 21.588 hybrid contribution 0.344 0.254 -0.485 0.647 sum 10.425 -17.532 6.447 21.392 Atomic orbital electron populations 1.69982 1.06017 1.26280 1.51364 1.25020 0.94794 0.99122 0.95598 0.86603 0.80169 0.84145 0.77499 1.19785 1.21163 1.21081 1.21305 0.92966 0.91040 1.49752 0.92666 1.19120 0.93639 0.91108 0.97052 1.21236 0.97862 0.94710 0.96217 1.21682 0.97520 0.94328 1.01358 1.22085 0.96333 0.99249 0.89132 1.61989 1.27848 1.01770 1.34248 1.22108 0.94660 0.94107 0.95944 1.21304 0.96234 0.99044 0.93957 0.89871 1.21605 0.98292 0.98053 0.97476 1.21562 0.97639 1.01931 0.94310 1.21902 0.95300 0.91421 0.98598 1.60263 1.25836 1.40896 1.05419 1.21892 0.94321 1.01210 0.88412 1.22323 0.95426 0.89930 1.00108 1.21532 0.97815 0.95591 0.98663 0.93202 0.96862 0.96522 0.93173 0.92290 0.91663 0.95551 0.91866 0.95245 0.91311 0.92000 0.92382 0.91176 0.91884 0.91187 0.95612 0.84005 0.95664 0.89131 0.90697 0.95782 0.91049 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.51 -14.46 8.44 -34.44 -0.29 -14.75 16 8 H 0.06 1.52 7.08 -52.49 -0.37 1.15 16 9 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 10 C -0.08 -1.69 2.20 -90.49 -0.20 -1.89 16 11 C -0.11 -1.96 5.38 -26.65 -0.14 -2.10 16 12 C 0.06 0.89 5.46 -3.84 -0.02 0.87 16 13 N -0.53 -7.70 4.11 -234.68 -0.96 -8.67 16 14 C 0.06 0.72 4.55 -3.82 -0.02 0.70 16 15 C -0.09 -0.96 1.86 -90.53 -0.17 -1.13 16 16 H 0.08 1.05 6.07 -51.93 -0.32 0.73 16 17 C -0.12 -1.08 5.29 -26.61 -0.14 -1.22 16 18 C -0.12 -1.02 6.09 -26.65 -0.16 -1.18 16 19 C 0.06 0.51 6.55 -3.83 -0.03 0.48 16 20 N -0.69 -7.23 6.85 -113.81 -0.78 -8.01 16 21 C 0.07 0.80 5.62 -3.83 -0.02 0.78 16 22 C 0.05 0.78 4.99 -3.83 -0.02 0.76 16 23 C -0.10 -1.88 5.15 -26.65 -0.14 -2.01 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.84 8.12 -51.93 -0.42 0.42 16 32 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.34 3.12 8.90 -39.29 -0.35 2.77 16 41 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.09 1.20 7.60 -51.93 -0.39 0.81 16 43 H 0.07 1.11 5.70 -51.93 -0.30 0.82 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 1.46 7.05 -51.93 -0.37 1.10 16 46 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 343.83 15.07 5.18 5.18 Total: -1.00 -29.62 343.83 -11.25 -40.87 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -8.84 Total: -1.14 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: -1.57 Total: -18.60 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: -1.01 Total: -43.17 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.62 -11.25 -40.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579592772.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.063 kcal (2) G-P(sol) polarization free energy of solvation -29.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds