Wall clock time and date at job start Mon Mar 30 2020 00:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47083 * 2 1 4 4 H 1.09002 * 109.46890 * 174.08988 * 3 2 1 5 5 C 1.50697 * 109.47429 * 54.08706 * 3 2 1 6 6 H 1.08008 * 119.99643 * 240.00638 * 5 3 2 7 7 C 1.37872 * 120.00227 * 59.99532 * 5 3 2 8 8 N 1.31514 * 120.00075 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99891 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47305 * 60.00338 * 9 7 5 11 11 H 1.48504 * 109.46890 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47045 * 300.00126 * 9 7 5 13 13 N 1.46902 * 109.46828 * 294.08207 * 3 2 1 14 14 C 1.46895 * 111.00111 * 275.78746 * 13 3 2 15 15 C 1.50706 * 109.47003 * 176.20863 * 14 13 3 16 16 N 1.30833 * 125.95654 * 274.99563 * 15 14 13 17 17 C 1.33243 * 109.82806 * 180.02562 * 16 15 14 18 18 C 1.50693 * 125.52854 * 179.97438 * 17 16 15 19 19 C 1.53004 * 109.47200 * 60.00227 * 18 17 16 20 20 C 1.53002 * 109.47147 * 180.02562 * 18 17 16 21 21 C 1.52998 * 109.47191 * 300.00172 * 18 17 16 22 22 N 1.30719 * 108.94415 * 0.02562 * 17 16 15 23 23 N 1.34426 * 125.96220 * 94.68694 * 15 14 13 24 24 H 0.96996 * 126.82696 * 0.02562 * 23 15 14 25 25 H 1.09005 * 109.47178 * 298.56348 * 1 2 3 26 26 H 1.08999 * 109.47240 * 178.55865 * 1 2 3 27 27 H 1.09000 * 109.47016 * 58.55911 * 1 2 3 28 28 H 1.09000 * 109.47009 * 119.99129 * 2 1 3 29 29 H 1.08996 * 109.47559 * 239.99692 * 2 1 3 30 30 H 0.96994 * 120.00095 * 179.97438 * 8 7 5 31 31 H 1.00901 * 110.99629 * 39.74197 * 13 3 2 32 32 H 1.09005 * 109.47061 * 296.20134 * 14 13 3 33 33 H 1.08997 * 109.47274 * 56.20649 * 14 13 3 34 34 H 1.08995 * 109.46839 * 59.99953 * 19 18 17 35 35 H 1.08994 * 109.47161 * 179.97438 * 19 18 17 36 36 H 1.08997 * 109.47056 * 299.99961 * 19 18 17 37 37 H 1.08999 * 109.47119 * 60.00135 * 20 18 17 38 38 H 1.09004 * 109.46767 * 180.02562 * 20 18 17 39 39 H 1.09001 * 109.47039 * 299.99789 * 20 18 17 40 40 H 1.08997 * 109.47107 * 60.00013 * 21 18 17 41 41 H 1.09007 * 109.47370 * 180.02562 * 21 18 17 42 42 H 1.08999 * 109.47296 * 300.00001 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1249 1.4443 0.1058 5 6 1.4218 2.1940 1.1507 6 1 0.8148 3.0671 0.9615 7 6 1.6308 1.7668 2.4448 8 7 2.3701 0.7038 2.6751 9 14 0.8638 2.6980 3.8711 10 1 -0.6142 2.6949 3.7266 11 1 1.2380 2.0412 5.1493 12 1 1.3583 4.0982 3.8711 13 7 1.6704 2.0925 -1.2645 14 6 2.6511 1.7936 -2.3164 15 6 2.1915 2.3981 -3.6182 16 7 1.3638 1.8495 -4.4701 17 6 1.1812 2.6621 -5.5101 18 6 0.2975 2.3796 -6.6976 19 6 -1.1445 2.1839 -6.2251 20 6 0.3601 3.5578 -7.6717 21 6 0.7802 1.1101 -7.4019 22 7 1.8939 3.7437 -5.3338 23 7 2.5558 3.5975 -4.1038 24 1 3.1589 4.2339 -3.6889 25 1 -0.3634 0.4914 0.9026 26 1 -0.3634 -1.0273 -0.0258 27 1 -0.3633 0.5361 -0.8768 28 1 1.8933 -0.5137 0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 2.5174 0.4035 3.5855 31 1 0.7405 1.8247 -1.5503 32 1 3.6183 2.2148 -2.0418 33 1 2.7442 0.7136 -2.4302 34 1 -1.4883 3.0884 -5.7234 35 1 -1.7837 1.9800 -7.0841 36 1 -1.1888 1.3444 -5.5314 37 1 1.3875 3.6968 -8.0082 38 1 -0.2795 3.3536 -8.5304 39 1 0.0165 4.4625 -7.1701 40 1 0.7359 0.2705 -6.7082 41 1 0.1412 0.9059 -8.2612 42 1 1.8075 1.2495 -7.7385 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580841446.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:44 Heat of formation + Delta-G solvation = 62.766602 kcal Electronic energy + Delta-G solvation = -20554.935727 eV Core-core repulsion = 17570.965225 eV Total energy + Delta-G solvation = -2983.970502 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.99067 -37.11192 -36.49202 -33.05993 -31.97785 -31.28783 -29.86339 -27.43185 -27.29195 -26.72259 -24.69762 -23.24716 -23.08389 -20.64969 -19.37481 -18.86828 -17.60063 -16.18521 -15.57158 -15.19590 -14.84365 -14.66308 -14.21037 -13.91869 -13.72324 -13.25767 -12.88212 -12.52506 -12.32303 -12.29388 -12.04964 -11.80813 -11.69447 -11.65919 -11.38095 -11.09932 -10.97867 -10.92532 -10.78595 -10.54883 -10.05083 -9.97123 -9.80274 -9.77275 -9.58457 -9.28756 -9.06185 -8.39077 -7.41836 -6.02479 -4.04429 1.80190 2.83531 3.06879 3.31879 3.36466 3.39783 4.02923 4.41004 4.59116 4.82583 4.91435 5.14408 5.20861 5.29616 5.37242 5.55167 5.58716 5.73696 5.78650 5.79815 5.85993 5.93256 5.94994 6.03844 6.26422 6.31212 6.34561 6.38634 6.49245 6.55131 6.63024 6.90859 7.13578 7.22413 7.25578 7.48457 7.64173 7.81098 8.17588 8.32119 8.38522 8.49750 9.00024 9.59266 11.04586 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.031190 B = 0.004016 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.502253 B = 6970.290328 C = 7113.900724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.146 4.146 3 C 0.217 3.783 4 H 0.036 0.964 5 C -0.492 4.492 6 H 0.061 0.939 7 C 0.059 3.941 8 N -0.895 5.895 9 Si 0.895 3.105 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.678 5.678 14 C 0.130 3.870 15 C 0.306 3.694 16 N -0.538 5.538 17 C 0.234 3.766 18 C 0.028 3.972 19 C -0.136 4.136 20 C -0.136 4.136 21 C -0.135 4.135 22 N -0.323 5.323 23 N -0.476 5.476 24 H 0.440 0.560 25 H 0.065 0.935 26 H 0.023 0.977 27 H 0.030 0.970 28 H 0.093 0.907 29 H 0.014 0.986 30 H 0.260 0.740 31 H 0.337 0.663 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.768 1.555 -16.317 16.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.185 4.185 3 C 0.110 3.890 4 H 0.054 0.946 5 C -0.530 4.530 6 H 0.079 0.921 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.311 5.311 14 C -0.002 4.002 15 C 0.028 3.972 16 N -0.267 5.267 17 C -0.049 4.049 18 C 0.025 3.975 19 C -0.194 4.194 20 C -0.194 4.194 21 C -0.193 4.193 22 N -0.152 5.152 23 N -0.193 5.193 24 H 0.286 0.714 25 H 0.084 0.916 26 H 0.042 0.958 27 H 0.049 0.951 28 H 0.112 0.888 29 H 0.032 0.968 30 H 0.070 0.930 31 H 0.156 0.844 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.549 2.307 -16.474 16.706 hybrid contribution -0.041 -0.058 1.191 1.193 sum -1.590 2.249 -15.283 15.529 Atomic orbital electron populations 1.21558 0.97527 0.98177 1.01259 1.22107 0.95250 1.00764 1.00422 1.19254 0.96289 0.88940 0.84562 0.94613 1.20957 1.30826 1.11655 0.89602 0.92081 1.24886 0.95479 0.95137 0.98666 1.69864 1.38993 1.23998 1.20552 0.86614 0.79676 0.79962 0.81457 1.20340 1.21460 1.20368 1.61043 1.04158 1.63253 1.02671 1.20501 0.97541 0.98267 0.83910 1.24598 0.92119 0.84120 0.96413 1.70316 1.19882 1.32886 1.03626 1.24038 0.96735 0.88391 0.95773 1.18892 0.92955 0.96770 0.88862 1.21822 0.93316 1.02776 1.01514 1.21795 1.02290 0.97125 0.98143 1.21818 1.00887 0.96477 1.00139 1.77889 1.14750 1.23239 0.99336 1.47948 1.38333 1.16685 1.16299 0.71408 0.91607 0.95764 0.95056 0.88820 0.96755 0.92965 0.84403 0.89485 0.92040 0.92624 0.91848 0.91282 0.92219 0.91997 0.92119 0.91362 0.91828 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.39 37.16 0.35 -2.36 16 2 C -0.15 -3.29 5.50 -26.73 -0.15 -3.44 16 3 C 0.22 5.07 2.33 -68.86 -0.16 4.91 16 4 H 0.04 0.90 7.86 -51.93 -0.41 0.50 16 5 C -0.49 -12.81 7.35 -34.44 -0.25 -13.06 16 6 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 7 C 0.06 1.57 5.22 -17.82 -0.09 1.48 16 8 N -0.89 -24.42 11.39 55.43 0.63 -23.79 16 9 Si 0.89 20.88 29.54 -169.99 -5.02 15.85 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.68 -13.63 6.24 -109.22 -0.68 -14.31 16 14 C 0.13 2.18 6.11 -4.98 -0.03 2.15 16 15 C 0.31 5.00 7.71 -155.69 -1.20 3.80 16 16 N -0.54 -9.11 11.19 -8.16 -0.09 -9.20 16 17 C 0.23 3.60 6.36 -156.85 -1.00 2.61 16 18 C 0.03 0.34 0.99 -155.66 -0.15 0.18 16 19 C -0.14 -1.52 8.46 37.16 0.31 -1.21 16 20 C -0.14 -1.40 7.93 37.16 0.29 -1.11 16 21 C -0.13 -1.43 8.45 37.16 0.31 -1.11 16 22 N -0.32 -5.07 12.06 32.42 0.39 -4.68 16 23 N -0.48 -7.04 7.45 32.62 0.24 -6.80 16 24 H 0.44 5.27 8.96 -182.34 -1.63 3.64 16 25 H 0.06 1.52 7.05 -51.93 -0.37 1.16 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.03 0.62 6.42 -51.93 -0.33 0.28 16 28 H 0.09 2.37 6.25 -51.93 -0.32 2.05 16 29 H 0.01 0.29 7.24 -51.93 -0.38 -0.08 16 30 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.34 6.91 6.55 -39.29 -0.26 6.65 16 32 H 0.09 1.33 8.13 -51.93 -0.42 0.91 16 33 H 0.06 1.05 7.23 -51.93 -0.38 0.67 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 338.22 15.07 5.10 5.10 Total: -1.00 -28.44 338.22 -9.47 -37.91 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -8.27 Total: 7.07 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -1.76 Total: -7.16 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: 0.49 Total: -58.77 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.44 -9.47 -37.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580841446.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.678 kcal (2) G-P(sol) polarization free energy of solvation -28.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds