Wall clock time and date at job start Mon Mar 30 2020 00:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47083 * 2 1 4 4 H 1.09002 * 109.46890 * 174.08988 * 3 2 1 5 5 C 1.50697 * 109.47429 * 54.08706 * 3 2 1 6 6 H 1.08008 * 119.99643 * 240.00638 * 5 3 2 7 7 C 1.37872 * 120.00227 * 59.99532 * 5 3 2 8 8 N 1.31514 * 120.00075 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99891 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47305 * 60.00338 * 9 7 5 11 11 H 1.48504 * 109.46890 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47045 * 300.00126 * 9 7 5 13 13 N 1.46902 * 109.46828 * 294.08207 * 3 2 1 14 14 C 1.46895 * 111.00111 * 275.78746 * 13 3 2 15 15 C 1.50706 * 109.47003 * 176.20863 * 14 13 3 16 16 N 1.30833 * 125.95654 * 274.99563 * 15 14 13 17 17 C 1.33243 * 109.82806 * 180.02562 * 16 15 14 18 18 C 1.50693 * 125.52854 * 179.97438 * 17 16 15 19 19 C 1.53004 * 109.47200 * 60.00227 * 18 17 16 20 20 C 1.53002 * 109.47147 * 180.02562 * 18 17 16 21 21 C 1.52998 * 109.47191 * 300.00172 * 18 17 16 22 22 N 1.30719 * 108.94415 * 0.02562 * 17 16 15 23 23 N 1.34426 * 125.96220 * 94.68694 * 15 14 13 24 24 H 0.96996 * 126.82696 * 0.02562 * 23 15 14 25 25 H 1.09005 * 109.47178 * 298.56348 * 1 2 3 26 26 H 1.08999 * 109.47240 * 178.55865 * 1 2 3 27 27 H 1.09000 * 109.47016 * 58.55911 * 1 2 3 28 28 H 1.09000 * 109.47009 * 119.99129 * 2 1 3 29 29 H 1.08996 * 109.47559 * 239.99692 * 2 1 3 30 30 H 0.96994 * 120.00095 * 179.97438 * 8 7 5 31 31 H 1.00901 * 110.99629 * 39.74197 * 13 3 2 32 32 H 1.09005 * 109.47061 * 296.20134 * 14 13 3 33 33 H 1.08997 * 109.47274 * 56.20649 * 14 13 3 34 34 H 1.08995 * 109.46839 * 59.99953 * 19 18 17 35 35 H 1.08994 * 109.47161 * 179.97438 * 19 18 17 36 36 H 1.08997 * 109.47056 * 299.99961 * 19 18 17 37 37 H 1.08999 * 109.47119 * 60.00135 * 20 18 17 38 38 H 1.09004 * 109.46767 * 180.02562 * 20 18 17 39 39 H 1.09001 * 109.47039 * 299.99789 * 20 18 17 40 40 H 1.08997 * 109.47107 * 60.00013 * 21 18 17 41 41 H 1.09007 * 109.47370 * 180.02562 * 21 18 17 42 42 H 1.08999 * 109.47296 * 300.00001 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1249 1.4443 0.1058 5 6 1.4218 2.1940 1.1507 6 1 0.8148 3.0671 0.9615 7 6 1.6308 1.7668 2.4448 8 7 2.3701 0.7038 2.6751 9 14 0.8638 2.6980 3.8711 10 1 -0.6142 2.6949 3.7266 11 1 1.2380 2.0412 5.1493 12 1 1.3583 4.0982 3.8711 13 7 1.6704 2.0925 -1.2645 14 6 2.6511 1.7936 -2.3164 15 6 2.1915 2.3981 -3.6182 16 7 1.3638 1.8495 -4.4701 17 6 1.1812 2.6621 -5.5101 18 6 0.2975 2.3796 -6.6976 19 6 -1.1445 2.1839 -6.2251 20 6 0.3601 3.5578 -7.6717 21 6 0.7802 1.1101 -7.4019 22 7 1.8939 3.7437 -5.3338 23 7 2.5558 3.5975 -4.1038 24 1 3.1589 4.2339 -3.6889 25 1 -0.3634 0.4914 0.9026 26 1 -0.3634 -1.0273 -0.0258 27 1 -0.3633 0.5361 -0.8768 28 1 1.8933 -0.5137 0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 2.5174 0.4035 3.5855 31 1 0.7405 1.8247 -1.5503 32 1 3.6183 2.2148 -2.0418 33 1 2.7442 0.7136 -2.4302 34 1 -1.4883 3.0884 -5.7234 35 1 -1.7837 1.9800 -7.0841 36 1 -1.1888 1.3444 -5.5314 37 1 1.3875 3.6968 -8.0082 38 1 -0.2795 3.3536 -8.5304 39 1 0.0165 4.4625 -7.1701 40 1 0.7359 0.2705 -6.7082 41 1 0.1412 0.9059 -8.2612 42 1 1.8075 1.2495 -7.7385 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580841446.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:44 Heat of formation + Delta-G solvation = 45.344857 kcal Electronic energy + Delta-G solvation = -20555.691191 eV Core-core repulsion = 17570.965225 eV Total energy + Delta-G solvation = -2984.725966 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.20546 -38.51860 -37.75070 -34.79153 -33.21338 -32.98158 -31.32629 -28.74918 -28.13489 -28.03258 -26.33514 -25.04277 -24.17425 -21.94785 -21.17666 -19.96055 -18.85100 -18.03434 -16.97040 -16.69427 -16.29134 -15.99227 -15.64265 -15.03882 -14.87705 -14.67987 -14.48216 -14.25849 -13.75749 -13.41452 -13.11463 -13.07853 -12.97397 -12.76736 -12.60463 -12.56078 -12.43421 -12.30363 -11.99423 -11.90940 -11.87270 -11.73494 -11.40719 -11.02132 -11.01374 -10.98355 -10.53114 -10.41246 -9.07674 -8.04674 -6.12225 0.55664 1.45797 1.46574 1.53495 1.67854 1.84831 2.47211 2.90271 3.25193 3.50377 3.69369 3.82559 4.04252 4.08735 4.25011 4.52607 4.53673 4.58763 4.65525 4.76704 4.80288 4.81095 4.90070 4.94290 5.01104 5.02122 5.14551 5.19056 5.30167 5.32106 5.41234 5.43139 5.47696 5.51918 5.69148 5.76006 5.81136 6.12714 6.29592 6.59208 6.67868 6.96881 7.11040 7.54826 9.00603 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.031190 B = 0.004016 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.502253 B = 6970.290328 C = 7113.900724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.139 4.139 3 C 0.224 3.776 4 H 0.014 0.986 5 C -0.502 4.502 6 H 0.050 0.950 7 C 0.019 3.981 8 N -0.917 5.917 9 Si 0.948 3.052 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.679 5.679 14 C 0.137 3.863 15 C 0.299 3.701 16 N -0.556 5.556 17 C 0.226 3.774 18 C 0.022 3.978 19 C -0.132 4.132 20 C -0.129 4.129 21 C -0.130 4.130 22 N -0.333 5.333 23 N -0.468 5.468 24 H 0.451 0.549 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.065 0.935 29 H 0.030 0.970 30 H 0.260 0.740 31 H 0.335 0.665 32 H 0.101 0.899 33 H 0.062 0.938 34 H 0.044 0.956 35 H 0.093 0.907 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.092 0.908 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.542 1.818 -17.784 18.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.179 4.179 3 C 0.115 3.885 4 H 0.032 0.968 5 C -0.540 4.540 6 H 0.068 0.932 7 C -0.180 4.180 8 N -0.557 5.557 9 Si 0.774 3.226 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.312 5.312 14 C 0.005 3.995 15 C 0.020 3.980 16 N -0.285 5.285 17 C -0.057 4.057 18 C 0.019 3.981 19 C -0.190 4.190 20 C -0.187 4.187 21 C -0.188 4.188 22 N -0.162 5.162 23 N -0.187 5.187 24 H 0.299 0.701 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.154 0.846 32 H 0.119 0.881 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.111 0.889 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.110 0.890 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.314 2.590 -17.950 18.283 hybrid contribution 0.218 -0.127 1.582 1.602 sum -2.096 2.463 -16.368 16.684 Atomic orbital electron populations 1.21446 0.96380 0.99271 1.00546 1.21965 0.96196 0.99976 0.99743 1.19000 0.94631 0.89393 0.85441 0.96819 1.21173 1.30603 1.11464 0.90800 0.93172 1.25496 0.95927 0.95834 1.00711 1.69978 1.39924 1.24999 1.20783 0.85775 0.78968 0.78854 0.78968 1.20039 1.21254 1.20171 1.60879 1.04700 1.62974 1.02599 1.20435 0.97225 0.98515 0.83312 1.24372 0.92644 0.84704 0.96283 1.70308 1.20225 1.33720 1.04280 1.24774 0.96762 0.87820 0.96302 1.19173 0.92678 0.98117 0.88126 1.21800 0.93348 1.01538 1.02301 1.21759 1.02570 0.95893 0.98496 1.21787 1.01298 0.95080 1.00600 1.77871 1.15087 1.23637 0.99620 1.47929 1.38185 1.16471 1.16086 0.70109 0.93984 0.93879 0.93867 0.91633 0.95154 0.93126 0.84626 0.88060 0.92020 0.93701 0.88861 0.92879 0.92771 0.89166 0.93170 0.92824 0.88950 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.95 9.39 71.98 0.68 -4.27 16 2 C -0.14 -6.25 5.50 30.60 0.17 -6.08 16 3 C 0.22 10.48 2.33 44.17 0.10 10.58 16 4 H 0.01 0.71 7.86 -2.39 -0.02 0.69 16 5 C -0.50 -26.26 7.35 25.60 0.19 -26.08 16 6 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 7 C 0.02 1.01 5.22 84.65 0.44 1.45 16 8 N -0.92 -50.48 11.39 21.45 0.24 -50.24 16 9 Si 0.95 42.81 29.54 68.60 2.03 44.83 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 13 N -0.68 -27.01 6.24 -499.45 -3.12 -30.13 16 14 C 0.14 4.50 6.11 85.56 0.52 5.02 16 15 C 0.30 9.52 7.71 138.23 1.07 10.59 16 16 N -0.56 -18.39 11.19 -179.72 -2.01 -20.40 16 17 C 0.23 6.75 6.36 138.63 0.88 7.63 16 18 C 0.02 0.49 0.99 -52.93 -0.05 0.43 16 19 C -0.13 -2.71 8.46 71.98 0.61 -2.10 16 20 C -0.13 -2.38 7.93 71.98 0.57 -1.81 16 21 C -0.13 -2.47 8.45 71.98 0.61 -1.86 16 22 N -0.33 -10.13 12.06 -51.34 -0.62 -10.75 16 23 N -0.47 -13.44 7.45 -50.70 -0.38 -13.82 16 24 H 0.45 10.36 8.96 -213.10 -1.91 8.45 16 25 H 0.04 1.93 7.05 -2.38 -0.02 1.91 16 26 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.04 1.66 6.42 -2.39 -0.02 1.65 16 28 H 0.07 3.34 6.25 -2.39 -0.01 3.33 16 29 H 0.03 1.24 7.24 -2.39 -0.02 1.22 16 30 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 31 H 0.33 13.53 6.55 -89.69 -0.59 12.95 16 32 H 0.10 3.02 8.13 -2.38 -0.02 3.00 16 33 H 0.06 2.05 7.23 -2.39 -0.02 2.03 16 34 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -60.15 338.22 0.44 -59.71 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: -1.48 Total: 27.29 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 5.78 Total: -6.49 kcal Atomic # 7 Polarization: -119.46 SS G_CDS: -5.88 Total: -125.34 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -60.15 0.44 -59.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580841446.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.053 kcal (2) G-P(sol) polarization free energy of solvation -60.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds