Wall clock time and date at job start Mon Mar 30 2020 00:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53006 * 109.47229 * 2 1 4 4 N 1.46902 * 109.47269 * 120.00090 * 2 1 3 5 5 C 1.46895 * 111.00519 * 149.94317 * 4 2 1 6 6 C 1.50696 * 109.47304 * 287.56198 * 5 4 2 7 7 H 1.08007 * 119.99698 * 4.68620 * 6 5 4 8 8 C 1.37876 * 120.00553 * 184.69491 * 6 5 4 9 9 N 1.31515 * 119.99650 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00235 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47123 * 60.00045 * 10 8 6 12 12 H 1.48506 * 109.47202 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47387 * 299.99834 * 10 8 6 14 14 C 1.46905 * 110.99567 * 273.89469 * 4 2 1 15 15 C 1.50708 * 109.46917 * 77.42014 * 14 4 2 16 16 C 1.35356 * 126.74917 * 93.12900 * 15 14 4 17 17 N 1.35310 * 106.16861 * 180.12261 * 16 15 14 18 18 C 1.46503 * 125.86200 * 179.89989 * 17 16 15 19 19 C 1.53001 * 109.46845 * 84.72182 * 18 17 16 20 20 C 1.52994 * 109.47457 * 324.72021 * 18 17 16 21 21 N 1.28712 * 108.26678 * 359.64414 * 17 16 15 22 22 N 1.28636 * 110.17851 * 0.22279 * 21 17 16 23 23 H 1.08998 * 109.47445 * 309.18192 * 1 2 3 24 24 H 1.08998 * 109.47273 * 69.17834 * 1 2 3 25 25 H 1.08997 * 109.47144 * 189.17770 * 1 2 3 26 26 H 1.09004 * 109.47363 * 239.99843 * 2 1 3 27 27 H 1.08997 * 109.46949 * 171.60509 * 3 2 1 28 28 H 1.09004 * 109.46722 * 291.60218 * 3 2 1 29 29 H 1.08991 * 109.47123 * 51.60480 * 3 2 1 30 30 H 1.09004 * 109.46757 * 47.55648 * 5 4 2 31 31 H 1.08998 * 109.47385 * 167.55576 * 5 4 2 32 32 H 0.96994 * 120.00073 * 180.02562 * 9 8 6 33 33 H 1.08997 * 109.47587 * 317.42291 * 14 4 2 34 34 H 1.09001 * 109.47449 * 197.41604 * 14 4 2 35 35 H 1.07998 * 126.91292 * 0.02562 * 16 15 14 36 36 H 1.09004 * 109.46988 * 204.71552 * 18 17 16 37 37 H 1.09003 * 109.47237 * 59.99948 * 19 18 17 38 38 H 1.09002 * 109.47015 * 299.99970 * 19 18 17 39 39 H 1.08999 * 109.47091 * 179.97438 * 19 18 17 40 40 H 1.09008 * 109.46942 * 179.97438 * 20 18 17 41 41 H 1.09001 * 109.47408 * 299.99842 * 20 18 17 42 42 H 1.09002 * 109.47389 * 60.00320 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 3.3142 -1.3377 0.9433 6 6 3.1093 -2.5426 0.0617 7 1 2.1291 -2.7598 -0.3366 8 6 4.1729 -3.3677 -0.2364 9 7 5.3665 -3.1030 0.2482 10 14 3.9186 -4.8616 -1.3287 11 1 3.4205 -4.4242 -2.6575 12 1 5.2086 -5.5782 -1.4955 13 1 2.9249 -5.7697 -0.7019 14 6 2.1073 0.2288 2.3403 15 6 0.7294 0.4624 2.9043 16 6 0.1431 -0.2171 3.9176 17 7 -1.0837 0.3305 4.0783 18 6 -2.0860 -0.0834 5.0635 19 6 -1.8101 0.6157 6.3962 20 6 -2.0141 -1.5992 5.2582 21 7 -1.2168 1.2810 3.2207 22 7 -0.1528 1.3854 2.5053 23 1 -0.3634 0.6492 0.7966 24 1 -0.3634 0.3653 -0.9605 25 1 -0.3633 -1.0145 0.1639 26 1 1.8933 -0.5139 -0.8900 27 1 3.1196 1.4462 0.1500 28 1 1.8043 1.9112 -0.9555 29 1 1.5594 1.9978 0.8054 30 1 3.9795 -0.6322 0.4454 31 1 3.7578 -1.6503 1.8885 32 1 6.1148 -3.6832 0.0383 33 1 2.5301 1.1775 2.0096 34 1 2.7459 -0.2051 3.1096 35 1 0.5684 -1.0332 4.4828 36 1 -3.0794 0.1906 4.7082 37 1 -1.8614 1.6956 6.2574 38 1 -0.8167 0.3417 6.7514 39 1 -2.5561 0.3081 7.1290 40 1 -2.7595 -1.9071 5.9916 41 1 -2.2106 -2.0973 4.3088 42 1 -1.0207 -1.8732 5.6135 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581396559.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:06 Heat of formation + Delta-G solvation = 108.445633 kcal Electronic energy + Delta-G solvation = -21092.832494 eV Core-core repulsion = 18110.842783 eV Total energy + Delta-G solvation = -2981.989711 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.01893 -37.79433 -36.37978 -32.82180 -31.85735 -31.25018 -30.30282 -27.83136 -27.32099 -26.35787 -24.76559 -23.68637 -21.89948 -21.19517 -20.55996 -18.71159 -17.03940 -16.22887 -16.10764 -15.28102 -14.98340 -14.63281 -14.39590 -14.00513 -13.68123 -13.43987 -12.88797 -12.76137 -12.63353 -12.53797 -12.08152 -12.05062 -11.73506 -11.65491 -11.44964 -11.28834 -10.92859 -10.86343 -10.63813 -10.60275 -10.40965 -10.30542 -9.99387 -9.71340 -9.28451 -9.21213 -8.72486 -8.37627 -7.12226 -5.97853 -3.98134 1.88730 2.46265 2.87886 3.36560 3.40149 3.43850 4.16863 4.45477 4.47365 4.63836 4.69444 5.07583 5.11487 5.18585 5.26849 5.30826 5.37856 5.40711 5.48747 5.66994 5.73276 5.84031 5.84801 5.95329 6.15955 6.18676 6.35229 6.39200 6.53509 6.56183 6.68930 6.73649 6.85557 7.03045 7.16449 7.36365 7.44955 7.88880 8.17161 8.33501 8.62350 8.84303 9.09619 9.65431 11.12665 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.022373 B = 0.005005 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.194971 B = 5592.859820 C = 6150.956483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.086 3.914 3 C -0.178 4.178 4 N -0.525 5.525 5 C 0.193 3.807 6 C -0.501 4.501 7 H 0.061 0.939 8 C 0.055 3.945 9 N -0.901 5.901 10 Si 0.896 3.104 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.121 3.879 15 C 0.010 3.990 16 C -0.038 4.038 17 N -0.293 5.293 18 C 0.140 3.860 19 C -0.164 4.164 20 C -0.166 4.166 21 N -0.103 5.103 22 N -0.260 5.260 23 H 0.079 0.921 24 H 0.037 0.963 25 H 0.046 0.954 26 H 0.081 0.919 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.067 0.933 30 H -0.009 1.009 31 H 0.031 0.969 32 H 0.261 0.739 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.184 0.816 36 H 0.109 0.891 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.831 5.686 11.743 18.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.023 4.023 3 C -0.237 4.237 4 N -0.250 5.250 5 C 0.069 3.931 6 C -0.540 4.540 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.009 4.009 15 C -0.128 4.128 16 C -0.189 4.189 17 N -0.088 5.088 18 C 0.039 3.961 19 C -0.222 4.222 20 C -0.224 4.224 21 N -0.081 5.081 22 N -0.127 5.127 23 H 0.097 0.903 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.099 0.901 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.009 0.991 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.201 0.799 36 H 0.127 0.873 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.923 6.335 11.337 19.040 hybrid contribution 1.149 -1.256 -0.316 1.732 sum -12.773 5.079 11.022 17.619 Atomic orbital electron populations 1.22207 0.96044 1.01730 1.01227 1.21525 0.94674 0.91719 0.94355 1.22438 1.00699 0.98984 1.01575 1.62249 1.31652 1.28083 1.02998 1.19775 0.83397 0.93100 0.96867 1.21123 0.95067 1.08784 1.28986 0.92048 1.24956 0.95134 0.98005 0.96460 1.69942 0.99961 1.38743 1.45398 0.86592 0.77117 0.82835 0.81034 1.20328 1.21431 1.20295 1.20495 0.88034 0.97368 0.94980 1.22039 0.99108 0.95342 0.96270 1.23223 0.87153 1.04126 1.04357 1.47416 1.12594 1.23622 1.25215 1.21578 0.91118 0.96208 0.87235 1.22216 1.03358 1.01495 0.95136 1.22209 1.04048 0.92335 1.03812 1.78201 1.20253 1.08138 1.01470 1.74816 0.97851 1.21057 1.18986 0.90266 0.94388 0.93442 0.90077 0.93179 0.93424 0.91405 0.99086 0.95049 0.92968 0.92359 0.90163 0.79873 0.87268 0.91442 0.91443 0.90027 0.89795 0.90986 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 8.93 37.15 0.33 -2.65 16 2 C 0.09 1.79 2.66 -67.71 -0.18 1.61 16 3 C -0.18 -3.30 7.77 37.16 0.29 -3.02 16 4 N -0.53 -11.44 4.26 -229.51 -0.98 -12.42 16 5 C 0.19 4.97 4.65 -4.98 -0.02 4.95 16 6 C -0.50 -14.06 8.38 -34.44 -0.29 -14.35 16 7 H 0.06 1.74 7.73 -52.48 -0.41 1.33 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.58 13.29 55.43 0.74 -25.85 16 10 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.12 2.25 5.08 -4.97 -0.03 2.23 16 15 C 0.01 0.17 5.57 -82.77 -0.46 -0.29 16 16 C -0.04 -0.55 10.62 -17.05 -0.18 -0.73 16 17 N -0.29 -3.87 3.25 -54.76 -0.18 -4.04 16 18 C 0.14 1.20 3.85 -67.93 -0.26 0.94 16 19 C -0.16 -1.11 9.52 37.16 0.35 -0.76 16 20 C -0.17 -1.17 8.84 37.15 0.33 -0.84 16 21 N -0.10 -1.67 13.17 60.35 0.79 -0.87 16 22 N -0.26 -4.64 8.51 33.29 0.28 -4.35 16 23 H 0.08 1.53 4.05 -51.93 -0.21 1.32 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.08 1.87 7.03 -51.93 -0.37 1.51 16 27 H 0.05 0.95 7.28 -51.93 -0.38 0.57 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.07 1.23 5.65 -51.93 -0.29 0.94 16 30 H -0.01 -0.24 7.55 -51.93 -0.39 -0.63 16 31 H 0.03 0.85 7.66 -51.93 -0.40 0.45 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.06 1.07 5.12 -51.93 -0.27 0.81 16 34 H 0.08 1.41 7.61 -51.93 -0.40 1.02 16 35 H 0.18 2.16 7.31 -52.49 -0.38 1.78 16 36 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.51 7.18 -51.93 -0.37 0.14 16 LS Contribution 330.42 15.07 4.98 4.98 Total: -1.00 -31.83 330.42 -6.40 -38.23 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -6.80 Total: -0.99 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -0.22 Total: -11.45 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: 0.66 Total: -47.54 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.83 -6.40 -38.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581396559.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.679 kcal (2) G-P(sol) polarization free energy of solvation -31.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds