Wall clock time and date at job start Mon Mar 30 2020 00:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53006 * 109.47229 * 2 1 4 4 N 1.46902 * 109.47269 * 120.00090 * 2 1 3 5 5 C 1.46895 * 111.00519 * 149.94317 * 4 2 1 6 6 C 1.50696 * 109.47304 * 287.56198 * 5 4 2 7 7 H 1.08007 * 119.99698 * 4.68620 * 6 5 4 8 8 C 1.37876 * 120.00553 * 184.69491 * 6 5 4 9 9 N 1.31515 * 119.99650 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00235 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47123 * 60.00045 * 10 8 6 12 12 H 1.48506 * 109.47202 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47387 * 299.99834 * 10 8 6 14 14 C 1.46905 * 110.99567 * 273.89469 * 4 2 1 15 15 C 1.50708 * 109.46917 * 77.42014 * 14 4 2 16 16 C 1.35356 * 126.74917 * 93.12900 * 15 14 4 17 17 N 1.35310 * 106.16861 * 180.12261 * 16 15 14 18 18 C 1.46503 * 125.86200 * 179.89989 * 17 16 15 19 19 C 1.53001 * 109.46845 * 84.72182 * 18 17 16 20 20 C 1.52994 * 109.47457 * 324.72021 * 18 17 16 21 21 N 1.28712 * 108.26678 * 359.64414 * 17 16 15 22 22 N 1.28636 * 110.17851 * 0.22279 * 21 17 16 23 23 H 1.08998 * 109.47445 * 309.18192 * 1 2 3 24 24 H 1.08998 * 109.47273 * 69.17834 * 1 2 3 25 25 H 1.08997 * 109.47144 * 189.17770 * 1 2 3 26 26 H 1.09004 * 109.47363 * 239.99843 * 2 1 3 27 27 H 1.08997 * 109.46949 * 171.60509 * 3 2 1 28 28 H 1.09004 * 109.46722 * 291.60218 * 3 2 1 29 29 H 1.08991 * 109.47123 * 51.60480 * 3 2 1 30 30 H 1.09004 * 109.46757 * 47.55648 * 5 4 2 31 31 H 1.08998 * 109.47385 * 167.55576 * 5 4 2 32 32 H 0.96994 * 120.00073 * 180.02562 * 9 8 6 33 33 H 1.08997 * 109.47587 * 317.42291 * 14 4 2 34 34 H 1.09001 * 109.47449 * 197.41604 * 14 4 2 35 35 H 1.07998 * 126.91292 * 0.02562 * 16 15 14 36 36 H 1.09004 * 109.46988 * 204.71552 * 18 17 16 37 37 H 1.09003 * 109.47237 * 59.99948 * 19 18 17 38 38 H 1.09002 * 109.47015 * 299.99970 * 19 18 17 39 39 H 1.08999 * 109.47091 * 179.97438 * 19 18 17 40 40 H 1.09008 * 109.46942 * 179.97438 * 20 18 17 41 41 H 1.09001 * 109.47408 * 299.99842 * 20 18 17 42 42 H 1.09002 * 109.47389 * 60.00320 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 3.3142 -1.3377 0.9433 6 6 3.1093 -2.5426 0.0617 7 1 2.1291 -2.7598 -0.3366 8 6 4.1729 -3.3677 -0.2364 9 7 5.3665 -3.1030 0.2482 10 14 3.9186 -4.8616 -1.3287 11 1 3.4205 -4.4242 -2.6575 12 1 5.2086 -5.5782 -1.4955 13 1 2.9249 -5.7697 -0.7019 14 6 2.1073 0.2288 2.3403 15 6 0.7294 0.4624 2.9043 16 6 0.1431 -0.2171 3.9176 17 7 -1.0837 0.3305 4.0783 18 6 -2.0860 -0.0834 5.0635 19 6 -1.8101 0.6157 6.3962 20 6 -2.0141 -1.5992 5.2582 21 7 -1.2168 1.2810 3.2207 22 7 -0.1528 1.3854 2.5053 23 1 -0.3634 0.6492 0.7966 24 1 -0.3634 0.3653 -0.9605 25 1 -0.3633 -1.0145 0.1639 26 1 1.8933 -0.5139 -0.8900 27 1 3.1196 1.4462 0.1500 28 1 1.8043 1.9112 -0.9555 29 1 1.5594 1.9978 0.8054 30 1 3.9795 -0.6322 0.4454 31 1 3.7578 -1.6503 1.8885 32 1 6.1148 -3.6832 0.0383 33 1 2.5301 1.1775 2.0096 34 1 2.7459 -0.2051 3.1096 35 1 0.5684 -1.0332 4.4828 36 1 -3.0794 0.1906 4.7082 37 1 -1.8614 1.6956 6.2574 38 1 -0.8167 0.3417 6.7514 39 1 -2.5561 0.3081 7.1290 40 1 -2.7595 -1.9071 5.9916 41 1 -2.2106 -2.0973 4.3088 42 1 -1.0207 -1.8732 5.6135 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581396559.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:05 Heat of formation + Delta-G solvation = 87.862629 kcal Electronic energy + Delta-G solvation = -21093.725040 eV Core-core repulsion = 18110.842783 eV Total energy + Delta-G solvation = -2982.882257 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.19619 -39.42178 -37.26953 -34.92095 -33.21569 -32.48158 -31.82135 -29.22653 -28.23323 -27.96812 -26.43891 -24.71235 -23.86285 -22.51748 -21.53754 -20.26801 -18.40786 -17.93216 -17.38184 -16.91822 -16.47026 -15.86567 -15.80922 -15.34571 -15.08707 -14.41730 -14.22564 -14.20014 -14.00959 -13.61140 -13.34944 -13.31437 -13.13682 -12.82281 -12.76113 -12.60892 -12.46420 -12.34335 -12.27349 -12.12844 -12.04048 -11.79744 -11.61653 -11.33830 -11.33126 -10.58735 -10.54029 -10.01912 -8.90391 -8.14879 -6.23658 0.75021 1.42356 1.44833 1.50698 1.53409 1.58662 2.43852 3.16198 3.31583 3.50585 3.66025 3.84437 3.98686 4.05748 4.18866 4.22220 4.37625 4.49785 4.59623 4.61757 4.65698 4.75279 4.79500 4.80435 4.84236 4.92623 4.97601 5.09201 5.14068 5.15125 5.19046 5.25622 5.26551 5.29075 5.51900 5.62344 5.73174 5.84570 6.13476 6.47616 6.70348 6.91421 7.44905 7.62250 8.94944 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.022373 B = 0.005005 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.194971 B = 5592.859820 C = 6150.956483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.085 3.915 3 C -0.167 4.167 4 N -0.529 5.529 5 C 0.210 3.790 6 C -0.517 4.517 7 H 0.054 0.946 8 C 0.006 3.994 9 N -0.932 5.932 10 Si 0.963 3.037 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.269 1.269 14 C 0.125 3.875 15 C -0.014 4.014 16 C -0.026 4.026 17 N -0.280 5.280 18 C 0.129 3.871 19 C -0.157 4.157 20 C -0.162 4.162 21 N -0.118 5.118 22 N -0.285 5.285 23 H 0.085 0.915 24 H 0.053 0.947 25 H 0.032 0.968 26 H 0.052 0.948 27 H 0.038 0.962 28 H 0.063 0.937 29 H 0.073 0.927 30 H -0.035 1.035 31 H 0.014 0.986 32 H 0.264 0.736 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.209 0.791 36 H 0.119 0.881 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.054 0.946 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.474 5.025 12.789 19.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 C -0.226 4.226 4 N -0.254 5.254 5 C 0.084 3.916 6 C -0.555 4.555 7 H 0.072 0.928 8 C -0.192 4.192 9 N -0.573 5.573 10 Si 0.788 3.212 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.194 1.194 14 C -0.005 4.005 15 C -0.152 4.152 16 C -0.178 4.178 17 N -0.075 5.075 18 C 0.029 3.971 19 C -0.215 4.215 20 C -0.220 4.220 21 N -0.096 5.096 22 N -0.151 5.151 23 H 0.103 0.897 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.092 0.908 30 H -0.017 1.017 31 H 0.032 0.968 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.226 0.774 36 H 0.136 0.864 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.073 0.927 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.608 5.695 12.398 20.730 hybrid contribution 1.590 -1.027 -0.545 1.970 sum -14.018 4.668 11.853 18.941 Atomic orbital electron populations 1.22113 0.94690 1.00993 1.02359 1.21502 0.95605 0.92474 0.92795 1.22311 0.99859 0.97653 1.02733 1.62186 1.29145 1.29666 1.04366 1.19418 0.84714 0.92290 0.95160 1.21376 0.94869 1.09754 1.29534 0.92761 1.25783 0.94746 1.00933 0.97711 1.70056 1.00738 1.39954 1.46529 0.85542 0.77361 0.79176 0.79154 1.19801 1.20698 1.19440 1.20428 0.89609 0.96540 0.93885 1.21827 0.98744 0.96775 0.97892 1.23525 0.87220 1.03753 1.03287 1.47839 1.12840 1.22127 1.24694 1.22097 0.90374 0.97549 0.87045 1.22206 1.04369 1.00434 0.94533 1.22232 1.05245 0.90701 1.03817 1.78112 1.19864 1.09355 1.02275 1.74730 0.98401 1.21875 1.20144 0.89721 0.92820 0.94930 0.92964 0.94255 0.91764 0.90800 1.01704 0.96809 0.92741 0.92473 0.89635 0.77420 0.86352 0.92728 0.91551 0.86912 0.86694 0.92676 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.53 8.93 71.98 0.64 -4.89 16 2 C 0.08 3.58 2.66 44.91 0.12 3.70 16 3 C -0.17 -6.21 7.77 71.98 0.56 -5.65 16 4 N -0.53 -23.51 4.26 -880.05 -3.75 -27.27 16 5 C 0.21 11.16 4.65 85.56 0.40 11.56 16 6 C -0.52 -29.59 8.38 25.60 0.21 -29.38 16 7 H 0.05 3.12 7.73 -2.91 -0.02 3.10 16 8 C 0.01 0.36 5.46 84.65 0.46 0.82 16 9 N -0.93 -55.74 13.29 21.45 0.28 -55.46 16 10 Si 0.96 44.71 29.54 68.60 2.03 46.74 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 14 C 0.13 4.69 5.08 85.56 0.43 5.12 16 15 C -0.01 -0.48 5.57 41.60 0.23 -0.25 16 16 C -0.03 -0.71 10.62 83.49 0.89 0.17 16 17 N -0.28 -6.91 3.25 -327.16 -1.06 -7.98 16 18 C 0.13 1.88 3.85 44.99 0.17 2.06 16 19 C -0.16 -1.68 9.52 71.98 0.69 -0.99 16 20 C -0.16 -1.82 8.84 71.98 0.64 -1.18 16 21 N -0.12 -3.71 13.17 37.02 0.49 -3.23 16 22 N -0.28 -10.00 8.51 -48.59 -0.41 -10.42 16 23 H 0.08 3.24 4.05 -2.39 -0.01 3.23 16 24 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.03 1.31 8.14 -2.39 -0.02 1.30 16 26 H 0.05 2.48 7.03 -2.39 -0.02 2.47 16 27 H 0.04 1.52 7.28 -2.39 -0.02 1.50 16 28 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.07 2.66 5.65 -2.39 -0.01 2.65 16 30 H -0.03 -1.99 7.55 -2.39 -0.02 -2.01 16 31 H 0.01 0.77 7.66 -2.39 -0.02 0.75 16 32 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 33 H 0.06 2.14 5.12 -2.39 -0.01 2.13 16 34 H 0.09 3.05 7.61 -2.39 -0.02 3.03 16 35 H 0.21 4.46 7.31 -2.91 -0.02 4.44 16 36 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.11 0.60 8.14 -2.38 -0.02 0.58 16 41 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.07 0.82 7.18 -2.39 -0.02 0.80 16 Total: -1.00 -69.21 330.42 4.00 -65.20 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 0.99 Total: 11.30 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: 5.44 Total: -18.91 kcal Atomic # 7 Polarization: -99.89 SS G_CDS: -4.46 Total: -104.35 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -69.21 4.00 -65.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581396559.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.067 kcal (2) G-P(sol) polarization free energy of solvation -69.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds