Wall clock time and date at job start Mon Mar 30 2020 00:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46495 * 109.46840 * 2 1 4 4 N 1.28722 * 125.87277 * 273.30346 * 3 2 1 5 5 N 1.28630 * 110.17845 * 179.97438 * 4 3 2 6 6 C 1.33767 * 108.88565 * 359.76631 * 5 4 3 7 7 C 1.50708 * 126.74984 * 180.23680 * 6 5 4 8 8 C 1.35317 * 125.86685 * 93.28865 * 3 2 1 9 9 C 1.50701 * 126.91221 * 359.97430 * 8 3 2 10 10 N 1.46899 * 109.46707 * 97.75177 * 9 8 3 11 11 C 1.46898 * 110.99699 * 163.00348 * 10 9 8 12 12 C 1.50701 * 109.47030 * 201.48130 * 11 10 9 13 13 H 1.08000 * 120.00287 * 4.58541 * 12 11 10 14 14 C 1.37882 * 120.00041 * 184.58616 * 12 11 10 15 15 N 1.31504 * 119.99856 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99827 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47197 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.46940 * 119.99939 * 16 14 12 19 19 H 1.48497 * 109.46777 * 239.99847 * 16 14 12 20 20 C 1.46900 * 110.99940 * 286.95422 * 10 9 8 21 21 C 1.53008 * 109.47121 * 164.59722 * 20 10 9 22 22 C 1.53001 * 109.47453 * 284.59237 * 20 10 9 23 23 H 1.08994 * 109.47284 * 59.99586 * 1 2 3 24 24 H 1.09001 * 109.47286 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46507 * 299.99578 * 1 2 3 26 26 H 1.08999 * 109.46507 * 240.00422 * 2 1 3 27 27 H 1.08994 * 109.47284 * 120.00414 * 2 1 3 28 28 H 1.09002 * 109.46713 * 270.16108 * 7 6 5 29 29 H 1.08998 * 109.47036 * 30.15465 * 7 6 5 30 30 H 1.08994 * 109.46986 * 150.16386 * 7 6 5 31 31 H 1.09003 * 109.46952 * 337.75221 * 9 8 3 32 32 H 1.08992 * 109.47043 * 217.75364 * 9 8 3 33 33 H 1.08996 * 109.47211 * 321.47497 * 11 10 9 34 34 H 1.08998 * 109.47561 * 81.48093 * 11 10 9 35 35 H 0.97004 * 120.00096 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.47191 * 44.59622 * 20 10 9 37 37 H 1.08997 * 109.46993 * 68.36678 * 21 20 10 38 38 H 1.08999 * 109.47238 * 188.37396 * 21 20 10 39 39 H 1.09006 * 109.46588 * 308.36919 * 21 20 10 40 40 H 1.09003 * 109.46849 * 50.74882 * 22 20 10 41 41 H 1.08999 * 109.47279 * 170.74337 * 22 20 10 42 42 H 1.08996 * 109.47310 * 290.75225 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2130 2.1124 -1.0413 5 7 2.6442 3.2734 -0.6939 6 6 2.7363 3.3198 0.6398 7 6 3.1931 4.4904 1.4719 8 6 2.3419 2.1077 1.0948 9 6 2.2705 1.6597 2.5319 10 7 3.6015 1.2243 2.9756 11 6 3.6745 1.1656 4.4416 12 6 5.1155 1.2415 4.8762 13 1 5.8930 1.3993 4.1434 14 6 5.4414 1.1094 6.2094 15 7 4.4947 0.9177 7.1018 16 14 7.2275 1.2042 6.7481 17 1 8.0917 1.4246 5.5607 18 1 7.3980 2.3304 7.7009 19 1 7.6127 -0.0676 7.4109 20 6 3.9582 -0.0697 2.3785 21 6 5.4607 -0.3091 2.5402 22 6 3.1852 -1.1867 3.0826 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 4.2722 4.4354 1.6149 29 1 2.9412 5.4197 0.9609 30 1 2.6962 4.4627 2.4416 31 1 1.5688 0.8302 2.6194 32 1 1.9330 2.4883 3.1544 33 1 3.1223 2.0036 4.8667 34 1 3.2388 0.2291 4.7899 35 1 4.7238 0.8251 8.0398 36 1 3.7032 -0.0635 1.3188 37 1 5.6927 -0.4633 3.5939 38 1 5.7513 -1.1921 1.9710 39 1 6.0085 0.5579 2.1706 40 1 2.1254 -0.9333 3.1106 41 1 3.3210 -2.1213 2.5384 42 1 3.5584 -1.3012 4.1002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582102783.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:39 Heat of formation + Delta-G solvation = 97.054252 kcal Electronic energy + Delta-G solvation = -21678.988314 eV Core-core repulsion = 18696.504636 eV Total energy + Delta-G solvation = -2982.483678 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.99795 -38.01605 -35.44674 -33.13132 -32.53902 -31.25808 -30.25058 -28.19285 -26.93700 -26.44380 -24.83892 -24.14040 -22.33776 -20.91377 -20.45875 -18.67607 -17.01613 -16.37442 -16.21508 -15.30981 -14.94296 -14.75255 -14.09591 -13.91043 -13.52902 -13.37299 -13.09954 -12.74907 -12.45732 -12.28257 -12.23815 -11.98633 -11.78541 -11.63167 -11.44649 -11.30182 -11.19864 -10.95503 -10.78608 -10.71772 -10.42935 -10.39197 -10.25904 -9.72534 -9.54365 -9.19500 -8.55733 -8.43727 -7.36597 -6.06885 -4.04908 1.87211 2.54300 2.88050 3.27701 3.36608 3.41118 4.37429 4.42266 4.64875 4.68293 4.88693 4.96699 5.05409 5.24252 5.27909 5.31681 5.36041 5.49798 5.61452 5.67845 5.75721 5.81047 5.89688 6.05398 6.08813 6.14493 6.22955 6.32852 6.37934 6.44994 6.62169 6.69151 6.83126 6.86957 7.06961 7.28961 7.32892 7.78142 8.01894 8.07934 8.45508 8.83814 9.01653 9.56849 11.03359 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.023505 B = 0.005985 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.939145 B = 4677.086816 C = 5178.164528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.104 3.896 3 N -0.290 5.290 4 N -0.101 5.101 5 N -0.276 5.276 6 C -0.009 4.009 7 C -0.059 4.059 8 C 0.008 3.992 9 C 0.123 3.877 10 N -0.521 5.521 11 C 0.184 3.816 12 C -0.497 4.497 13 H 0.071 0.929 14 C 0.054 3.946 15 N -0.900 5.900 16 Si 0.891 3.109 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.286 1.286 20 C 0.088 3.912 21 C -0.141 4.141 22 C -0.186 4.186 23 H 0.067 0.933 24 H 0.082 0.918 25 H 0.065 0.935 26 H 0.102 0.898 27 H 0.106 0.894 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.037 0.963 32 H 0.097 0.903 33 H 0.024 0.976 34 H 0.013 0.987 35 H 0.260 0.740 36 H 0.049 0.951 37 H 0.091 0.909 38 H 0.030 0.970 39 H 0.053 0.947 40 H 0.043 0.957 41 H 0.046 0.954 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.857 -2.735 -9.551 12.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.018 4.018 3 N -0.085 5.085 4 N -0.079 5.079 5 N -0.143 5.143 6 C -0.147 4.147 7 C -0.118 4.118 8 C -0.124 4.124 9 C -0.008 4.008 10 N -0.246 5.246 11 C 0.060 3.940 12 C -0.536 4.536 13 H 0.089 0.911 14 C -0.147 4.147 15 N -0.540 5.540 16 Si 0.719 3.281 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.212 1.212 20 C -0.021 4.021 21 C -0.198 4.198 22 C -0.244 4.244 23 H 0.086 0.914 24 H 0.101 0.899 25 H 0.084 0.916 26 H 0.121 0.879 27 H 0.125 0.875 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.115 0.885 33 H 0.042 0.958 34 H 0.031 0.969 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.110 0.890 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.610 -2.367 -11.077 13.115 hybrid contribution 0.313 -0.875 1.766 1.996 sum -6.297 -3.242 -9.311 11.699 Atomic orbital electron populations 1.22145 0.93242 1.03638 1.03550 1.22139 0.96190 0.77605 1.05825 1.47203 1.43408 1.12960 1.04879 1.78154 1.18928 0.98732 1.12079 1.74957 1.15887 1.11120 1.12322 1.21714 1.05420 0.96590 0.91004 1.19993 1.02137 0.92452 0.97185 1.22064 1.05874 0.92740 0.91750 1.20534 0.93004 1.00104 0.87144 1.62355 1.22338 1.27035 1.12837 1.19953 0.98178 0.96789 0.79081 1.21300 0.92513 1.47623 0.92126 0.91100 1.24963 0.97229 0.95770 0.96720 1.69951 1.31997 1.50348 1.01700 0.86537 0.85265 0.77513 0.78743 1.19592 1.21088 1.21245 1.21508 0.96759 0.87889 0.95896 1.22033 0.94195 0.99155 1.04406 1.22505 0.99595 0.98772 1.03540 0.91354 0.89911 0.91588 0.87922 0.87545 0.90290 0.91582 0.90714 0.94537 0.88531 0.95797 0.96881 0.93058 0.93299 0.88997 0.95070 0.92753 0.93797 0.93488 0.90075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 10.24 37.16 0.38 -1.13 16 2 C 0.10 1.15 6.11 -4.04 -0.02 1.13 16 3 N -0.29 -4.41 3.15 -57.05 -0.18 -4.59 16 4 N -0.10 -1.76 13.17 60.35 0.79 -0.97 16 5 N -0.28 -5.12 12.41 33.29 0.41 -4.70 16 6 C -0.01 -0.16 7.25 -82.78 -0.60 -0.75 16 7 C -0.06 -0.88 10.27 36.01 0.37 -0.51 16 8 C 0.01 0.13 5.72 -82.09 -0.47 -0.34 16 9 C 0.12 2.01 4.83 -4.98 -0.02 1.99 16 10 N -0.52 -10.03 4.36 -229.52 -1.00 -11.03 16 11 C 0.18 4.25 4.50 -4.98 -0.02 4.22 16 12 C -0.50 -12.66 6.86 -34.44 -0.24 -12.90 16 13 H 0.07 1.83 6.15 -52.49 -0.32 1.50 16 14 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 15 N -0.90 -25.08 13.29 55.43 0.74 -24.34 16 16 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 C 0.09 1.55 2.41 -67.71 -0.16 1.38 16 21 C -0.14 -2.62 7.89 37.16 0.29 -2.33 16 22 C -0.19 -2.99 7.37 37.16 0.27 -2.71 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.11 1.18 4.62 -51.93 -0.24 0.94 16 28 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 1.05 7.49 -51.93 -0.39 0.66 16 31 H 0.04 0.55 5.71 -51.93 -0.30 0.25 16 32 H 0.10 1.57 7.05 -51.93 -0.37 1.21 16 33 H 0.02 0.59 7.60 -51.93 -0.39 0.20 16 34 H 0.01 0.33 5.39 -51.93 -0.28 0.05 16 35 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.05 0.81 5.16 -51.93 -0.27 0.54 16 37 H 0.09 1.94 5.74 -51.93 -0.30 1.64 16 38 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.05 1.07 7.83 -51.93 -0.41 0.66 16 40 H 0.04 0.65 6.30 -51.93 -0.33 0.32 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 1.55 6.47 -51.93 -0.34 1.22 16 LS Contribution 325.04 15.07 4.90 4.90 Total: -1.00 -29.41 325.04 -6.12 -35.53 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -6.44 Total: 0.13 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -0.32 Total: -10.60 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.76 Total: -45.62 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.41 -6.12 -35.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582102783.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.585 kcal (2) G-P(sol) polarization free energy of solvation -29.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds