Wall clock time and date at job start Mon Mar 30 2020 00:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46495 * 109.46840 * 2 1 4 4 N 1.28722 * 125.87277 * 273.30346 * 3 2 1 5 5 N 1.28630 * 110.17845 * 179.97438 * 4 3 2 6 6 C 1.33767 * 108.88565 * 359.76631 * 5 4 3 7 7 C 1.50708 * 126.74984 * 180.23680 * 6 5 4 8 8 C 1.35317 * 125.86685 * 93.28865 * 3 2 1 9 9 C 1.50701 * 126.91221 * 359.97430 * 8 3 2 10 10 N 1.46899 * 109.46707 * 97.75177 * 9 8 3 11 11 C 1.46898 * 110.99699 * 163.00348 * 10 9 8 12 12 C 1.50701 * 109.47030 * 201.48130 * 11 10 9 13 13 H 1.08000 * 120.00287 * 4.58541 * 12 11 10 14 14 C 1.37882 * 120.00041 * 184.58616 * 12 11 10 15 15 N 1.31504 * 119.99856 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99827 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47197 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.46940 * 119.99939 * 16 14 12 19 19 H 1.48497 * 109.46777 * 239.99847 * 16 14 12 20 20 C 1.46900 * 110.99940 * 286.95422 * 10 9 8 21 21 C 1.53008 * 109.47121 * 164.59722 * 20 10 9 22 22 C 1.53001 * 109.47453 * 284.59237 * 20 10 9 23 23 H 1.08994 * 109.47284 * 59.99586 * 1 2 3 24 24 H 1.09001 * 109.47286 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46507 * 299.99578 * 1 2 3 26 26 H 1.08999 * 109.46507 * 240.00422 * 2 1 3 27 27 H 1.08994 * 109.47284 * 120.00414 * 2 1 3 28 28 H 1.09002 * 109.46713 * 270.16108 * 7 6 5 29 29 H 1.08998 * 109.47036 * 30.15465 * 7 6 5 30 30 H 1.08994 * 109.46986 * 150.16386 * 7 6 5 31 31 H 1.09003 * 109.46952 * 337.75221 * 9 8 3 32 32 H 1.08992 * 109.47043 * 217.75364 * 9 8 3 33 33 H 1.08996 * 109.47211 * 321.47497 * 11 10 9 34 34 H 1.08998 * 109.47561 * 81.48093 * 11 10 9 35 35 H 0.97004 * 120.00096 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.47191 * 44.59622 * 20 10 9 37 37 H 1.08997 * 109.46993 * 68.36678 * 21 20 10 38 38 H 1.08999 * 109.47238 * 188.37396 * 21 20 10 39 39 H 1.09006 * 109.46588 * 308.36919 * 21 20 10 40 40 H 1.09003 * 109.46849 * 50.74882 * 22 20 10 41 41 H 1.08999 * 109.47279 * 170.74337 * 22 20 10 42 42 H 1.08996 * 109.47310 * 290.75225 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2130 2.1124 -1.0413 5 7 2.6442 3.2734 -0.6939 6 6 2.7363 3.3198 0.6398 7 6 3.1931 4.4904 1.4719 8 6 2.3419 2.1077 1.0948 9 6 2.2705 1.6597 2.5319 10 7 3.6015 1.2243 2.9756 11 6 3.6745 1.1656 4.4416 12 6 5.1155 1.2415 4.8762 13 1 5.8930 1.3993 4.1434 14 6 5.4414 1.1094 6.2094 15 7 4.4947 0.9177 7.1018 16 14 7.2275 1.2042 6.7481 17 1 8.0917 1.4246 5.5607 18 1 7.3980 2.3304 7.7009 19 1 7.6127 -0.0676 7.4109 20 6 3.9582 -0.0697 2.3785 21 6 5.4607 -0.3091 2.5402 22 6 3.1852 -1.1867 3.0826 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 4.2722 4.4354 1.6149 29 1 2.9412 5.4197 0.9609 30 1 2.6962 4.4627 2.4416 31 1 1.5688 0.8302 2.6194 32 1 1.9330 2.4883 3.1544 33 1 3.1223 2.0036 4.8667 34 1 3.2388 0.2291 4.7899 35 1 4.7238 0.8251 8.0398 36 1 3.7032 -0.0635 1.3188 37 1 5.6927 -0.4633 3.5939 38 1 5.7513 -1.1921 1.9710 39 1 6.0085 0.5579 2.1706 40 1 2.1254 -0.9333 3.1106 41 1 3.3210 -2.1213 2.5384 42 1 3.5584 -1.3012 4.1002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582102783.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:39 Heat of formation + Delta-G solvation = 78.194952 kcal Electronic energy + Delta-G solvation = -21679.806114 eV Core-core repulsion = 18696.504636 eV Total energy + Delta-G solvation = -2983.301479 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.26673 -39.52224 -36.53230 -34.80323 -34.15822 -32.46148 -31.53001 -29.76822 -28.36775 -27.90227 -26.19518 -25.27932 -24.08213 -22.15547 -21.70271 -20.15151 -18.48272 -18.03290 -17.46359 -16.80653 -16.54460 -15.98327 -15.59728 -15.23701 -14.75081 -14.62749 -14.29302 -14.14044 -13.96344 -13.59857 -13.36494 -13.16361 -13.04310 -13.01683 -12.87227 -12.71353 -12.61909 -12.48046 -12.42550 -12.30491 -11.99036 -11.88248 -11.64567 -11.29126 -11.03738 -10.90660 -10.46809 -9.86642 -8.92945 -8.09109 -6.11772 0.59906 1.42274 1.44526 1.46495 1.55049 1.56837 2.46621 3.23756 3.24393 3.47403 3.57947 3.79352 3.88943 3.97875 4.08400 4.18736 4.25922 4.33448 4.42502 4.55931 4.65630 4.71116 4.78624 4.84918 4.88623 4.96315 4.98585 5.02164 5.10672 5.14376 5.16538 5.25638 5.35066 5.45483 5.58236 5.68498 5.71686 5.81309 6.19692 6.43907 6.66830 7.01048 7.53290 7.53607 9.00506 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.023505 B = 0.005985 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.939145 B = 4677.086816 C = 5178.164528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.091 3.909 3 N -0.278 5.278 4 N -0.111 5.111 5 N -0.304 5.304 6 C -0.021 4.021 7 C -0.057 4.057 8 C 0.003 3.997 9 C 0.129 3.871 10 N -0.531 5.531 11 C 0.201 3.799 12 C -0.495 4.495 13 H 0.065 0.935 14 C 0.007 3.993 15 N -0.933 5.933 16 Si 0.947 3.053 17 H -0.268 1.268 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.088 3.912 21 C -0.137 4.137 22 C -0.176 4.176 23 H 0.061 0.939 24 H 0.113 0.887 25 H 0.058 0.942 26 H 0.121 0.879 27 H 0.111 0.889 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.095 0.905 33 H 0.002 0.998 34 H 0.002 0.998 35 H 0.260 0.740 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.037 0.963 40 H 0.056 0.944 41 H 0.076 0.924 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.250 -3.845 -10.610 13.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.028 4.028 3 N -0.074 5.074 4 N -0.089 5.089 5 N -0.170 5.170 6 C -0.160 4.160 7 C -0.115 4.115 8 C -0.130 4.130 9 C -0.001 4.001 10 N -0.256 5.256 11 C 0.075 3.925 12 C -0.534 4.534 13 H 0.083 0.917 14 C -0.191 4.191 15 N -0.575 5.575 16 Si 0.774 3.226 17 H -0.192 1.192 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.021 4.021 21 C -0.194 4.194 22 C -0.234 4.234 23 H 0.080 0.920 24 H 0.132 0.868 25 H 0.077 0.923 26 H 0.139 0.861 27 H 0.129 0.871 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.113 0.887 33 H 0.020 0.980 34 H 0.019 0.981 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.005 -3.488 -12.168 14.468 hybrid contribution 0.402 -0.575 2.015 2.134 sum -6.603 -4.064 -10.154 12.775 Atomic orbital electron populations 1.22135 0.91419 1.05462 1.02889 1.22580 0.97716 0.75558 1.06943 1.47544 1.41972 1.13923 1.03921 1.78076 1.19236 0.98866 1.12746 1.74932 1.17142 1.11951 1.13000 1.22121 1.05352 0.97598 0.90964 1.20019 1.01519 0.92625 0.97360 1.21976 1.06388 0.92812 0.91854 1.20460 0.91872 1.00672 0.87103 1.62186 1.24460 1.28478 1.10487 1.19589 0.96355 0.95117 0.81427 1.21546 0.93656 1.46217 0.91978 0.91731 1.25627 1.00502 0.95931 0.97011 1.70048 1.33644 1.51928 1.01873 0.85654 0.81347 0.77341 0.78230 1.19211 1.21116 1.20969 1.21565 0.96199 0.87564 0.96748 1.21942 0.95029 0.99673 1.02775 1.22370 0.99848 0.99607 1.01580 0.91953 0.86831 0.92285 0.86060 0.87102 0.91127 0.90086 0.90189 0.92606 0.88690 0.97956 0.98081 0.93152 0.91577 0.91858 0.92315 0.94375 0.92471 0.90509 0.93508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 10.24 71.98 0.74 -1.65 16 2 C 0.09 1.74 6.11 86.38 0.53 2.27 16 3 N -0.28 -7.89 3.15 -334.40 -1.05 -8.94 16 4 N -0.11 -3.72 13.17 37.02 0.49 -3.24 16 5 N -0.30 -11.03 12.41 -48.60 -0.60 -11.64 16 6 C -0.02 -0.72 7.25 41.60 0.30 -0.42 16 7 C -0.06 -1.66 10.27 71.24 0.73 -0.93 16 8 C 0.00 0.08 5.72 41.35 0.24 0.32 16 9 C 0.13 4.07 4.83 85.56 0.41 4.48 16 10 N -0.53 -20.07 4.36 -880.07 -3.83 -23.90 16 11 C 0.20 9.31 4.50 85.56 0.38 9.70 16 12 C -0.50 -25.48 6.86 25.60 0.18 -25.30 16 13 H 0.06 3.35 6.15 -2.91 -0.02 3.34 16 14 C 0.01 0.36 5.46 84.66 0.46 0.82 16 15 N -0.93 -52.68 13.29 21.45 0.28 -52.39 16 16 Si 0.95 42.74 29.54 68.60 2.03 44.77 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 20 C 0.09 2.91 2.41 44.92 0.11 3.02 16 21 C -0.14 -4.94 7.89 71.98 0.57 -4.37 16 22 C -0.18 -5.27 7.37 71.98 0.53 -4.74 16 23 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.11 2.04 4.62 -2.39 -0.01 2.03 16 28 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.08 2.21 7.49 -2.39 -0.02 2.20 16 31 H 0.06 1.55 5.71 -2.39 -0.01 1.54 16 32 H 0.09 3.03 7.05 -2.39 -0.02 3.01 16 33 H 0.00 0.12 7.60 -2.39 -0.02 0.10 16 34 H 0.00 0.07 5.39 -2.39 -0.01 0.06 16 35 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 36 H 0.07 2.00 5.16 -2.39 -0.01 1.99 16 37 H 0.06 2.66 5.74 -2.39 -0.01 2.64 16 38 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.04 1.47 7.83 -2.38 -0.02 1.45 16 40 H 0.06 1.55 6.30 -2.39 -0.02 1.53 16 41 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 42 H 0.05 1.75 6.47 -2.39 -0.02 1.74 16 Total: -1.00 -63.26 325.04 3.50 -59.76 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 1.01 Total: 12.39 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: 5.18 Total: -16.81 kcal Atomic # 7 Polarization: -95.40 SS G_CDS: -4.72 Total: -100.11 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -63.26 3.50 -59.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582102783.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.957 kcal (2) G-P(sol) polarization free energy of solvation -63.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds