Wall clock time and date at job start Mon Mar 30 2020 00:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47134 * 2 1 4 4 C 1.53007 * 109.47063 * 119.99907 * 2 1 3 5 5 C 1.52994 * 109.46999 * 64.99894 * 4 2 1 6 6 N 1.46905 * 109.47117 * 177.94445 * 5 4 2 7 7 C 1.46898 * 110.99665 * 297.55951 * 6 5 4 8 8 C 1.50709 * 109.47075 * 292.78067 * 7 6 5 9 9 H 1.07996 * 119.99996 * 355.04647 * 8 7 6 10 10 C 1.37877 * 119.99556 * 175.04650 * 8 7 6 11 11 N 1.31513 * 120.00500 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99596 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47136 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47351 * 119.99689 * 12 10 8 15 15 H 1.48504 * 109.47093 * 240.00240 * 12 10 8 16 16 C 1.46898 * 110.99875 * 61.51447 * 6 5 4 17 17 C 1.52995 * 109.47515 * 66.04676 * 16 6 5 18 18 C 1.50699 * 109.47467 * 180.02562 * 17 16 6 19 19 C 1.35355 * 126.90719 * 274.95662 * 18 17 16 20 20 N 1.33768 * 106.49227 * 180.02562 * 19 18 17 21 21 N 1.28635 * 108.88964 * 0.02562 * 20 19 18 22 22 N 1.28711 * 110.17558 * 359.97438 * 21 20 19 23 23 H 0.97007 * 125.87032 * 180.02562 * 22 21 20 24 24 H 1.09002 * 109.46771 * 59.99722 * 1 2 3 25 25 H 1.08993 * 109.47487 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47412 * 300.00342 * 1 2 3 27 27 H 1.09000 * 109.47412 * 239.99658 * 2 1 3 28 28 H 1.09005 * 109.47223 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47518 * 299.99820 * 3 2 1 30 30 H 1.08999 * 109.47469 * 60.00061 * 3 2 1 31 31 H 1.09005 * 109.46901 * 304.99989 * 4 2 1 32 32 H 1.09000 * 109.47010 * 185.00052 * 4 2 1 33 33 H 1.09001 * 109.47213 * 57.94302 * 5 4 2 34 34 H 1.09000 * 109.47536 * 297.94671 * 5 4 2 35 35 H 1.08993 * 109.47333 * 52.78273 * 7 6 5 36 36 H 1.09001 * 109.46772 * 172.78636 * 7 6 5 37 37 H 0.96990 * 120.00009 * 179.97438 * 11 10 8 38 38 H 1.09002 * 109.47088 * 306.04454 * 16 6 5 39 39 H 1.08994 * 109.46690 * 186.04713 * 16 6 5 40 40 H 1.09002 * 109.47124 * 59.99801 * 17 16 6 41 41 H 1.09009 * 109.47201 * 300.00169 * 17 16 6 42 42 H 1.08000 * 126.75173 * 0.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 -2.1954 1.1880 6 7 2.1669 -2.8985 2.3632 7 6 3.6354 -2.8635 2.3777 8 6 4.1687 -3.6817 1.2299 9 1 3.4895 -4.2427 0.6052 10 6 5.5238 -3.7139 0.9774 11 7 6.3509 -3.0303 1.7378 12 14 6.1847 -4.7274 -0.4457 13 1 5.0571 -5.3972 -1.1422 14 1 6.8971 -3.8381 -1.3980 15 1 7.1255 -5.7532 0.0720 16 6 1.6147 -2.3405 3.6049 17 6 0.1113 -2.6178 3.6643 18 6 -0.4553 -2.0449 4.9378 19 6 -0.4839 -2.6383 6.1540 20 7 -1.0752 -1.7729 6.9851 21 7 -1.3923 -0.7140 6.3271 22 7 -1.0387 -0.8342 5.0954 23 1 -1.1680 -0.1708 4.3995 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6053 -0.2617 2.1370 32 1 3.1263 -0.6443 1.2952 33 1 2.0394 -2.6458 0.2815 34 1 0.5481 -2.2737 1.1789 35 1 3.9753 -1.8328 2.2780 36 1 3.9994 -3.2768 3.3184 37 1 7.3041 -3.0533 1.5603 38 1 1.7869 -1.2645 3.6278 39 1 2.1040 -2.8051 4.4609 40 1 -0.0609 -3.6939 3.6414 41 1 -0.3780 -2.1533 2.8081 42 1 -0.1040 -3.6179 6.4041 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590602227.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:51 Heat of formation + Delta-G solvation = 53.535034 kcal Electronic energy + Delta-G solvation = -20699.869083 eV Core-core repulsion = 17715.498270 eV Total energy + Delta-G solvation = -2984.370813 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.26552 -39.60693 -36.61815 -35.16088 -34.36736 -33.67004 -30.26984 -30.00872 -27.97566 -27.66216 -25.22717 -24.54732 -23.91029 -22.58189 -21.39277 -20.46350 -19.14946 -18.33525 -17.12550 -16.88743 -16.66683 -16.19936 -15.83995 -15.37639 -15.15692 -14.74130 -14.36204 -14.30308 -13.95303 -13.71175 -13.46183 -13.07875 -13.01081 -12.75485 -12.70377 -12.53199 -12.37412 -12.28916 -11.99811 -11.91183 -11.76317 -11.65065 -11.56820 -11.41869 -11.19111 -11.07871 -10.57006 -10.10891 -8.85782 -8.16478 -6.24945 0.58178 1.41152 1.42990 1.54468 1.55345 1.88334 2.42319 3.17153 3.26445 3.65138 3.86360 3.95493 4.02301 4.09519 4.15559 4.25605 4.37515 4.42894 4.50155 4.61693 4.72802 4.80843 4.86638 4.90034 4.92888 5.04627 5.08161 5.11252 5.16347 5.24248 5.26384 5.29210 5.40547 5.45647 5.57997 5.60402 5.72922 6.00201 6.12264 6.39837 6.70210 6.92995 7.43603 7.44664 8.94155 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.015844 B = 0.005341 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.841528 B = 5241.478191 C = 6497.359114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 C -0.144 4.144 4 C -0.141 4.141 5 C 0.066 3.934 6 N -0.537 5.537 7 C 0.204 3.796 8 C -0.512 4.512 9 H 0.063 0.937 10 C 0.003 3.997 11 N -0.936 5.936 12 Si 0.960 3.040 13 H -0.261 1.261 14 H -0.282 1.282 15 H -0.282 1.282 16 C 0.058 3.942 17 C -0.030 4.030 18 C 0.013 3.987 19 C -0.058 4.058 20 N -0.301 5.301 21 N -0.111 5.111 22 N -0.374 5.374 23 H 0.461 0.539 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.033 0.967 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.029 0.971 33 H 0.054 0.946 34 H 0.094 0.906 35 H -0.022 1.022 36 H -0.006 1.006 37 H 0.261 0.739 38 H 0.025 0.975 39 H 0.058 0.942 40 H 0.112 0.888 41 H 0.099 0.901 42 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.847 5.306 -1.749 15.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.112 4.112 3 C -0.201 4.201 4 C -0.180 4.180 5 C -0.062 4.062 6 N -0.260 5.260 7 C 0.078 3.922 8 C -0.550 4.550 9 H 0.081 0.919 10 C -0.195 4.195 11 N -0.578 5.578 12 Si 0.786 3.214 13 H -0.185 1.185 14 H -0.208 1.208 15 H -0.208 1.208 16 C -0.071 4.071 17 C -0.070 4.070 18 C -0.122 4.122 19 C -0.216 4.216 20 N -0.167 5.167 21 N -0.091 5.091 22 N -0.098 5.098 23 H 0.309 0.691 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.112 0.888 35 H -0.004 1.004 36 H 0.012 0.988 37 H 0.070 0.930 38 H 0.043 0.957 39 H 0.077 0.923 40 H 0.130 0.870 41 H 0.117 0.883 42 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -15.488 5.671 -0.565 16.503 hybrid contribution 1.945 0.192 -1.514 2.473 sum -13.542 5.863 -2.079 14.903 Atomic orbital electron populations 1.21835 0.93232 1.02354 1.02308 1.21036 0.97329 0.95735 0.97116 1.21817 0.99983 0.96124 1.02205 1.22137 0.99707 0.97722 0.98455 1.22166 0.99716 0.90708 0.93636 1.62226 1.08194 1.53645 1.01891 1.19405 0.83226 0.94139 0.95461 1.21476 0.91949 1.27925 1.13666 0.91883 1.25818 0.97461 0.96973 0.99249 1.70086 1.03395 1.43452 1.40819 0.85461 0.78434 0.78428 0.79094 1.18489 1.20849 1.20782 1.22042 0.94722 0.97089 0.93208 1.20105 0.93159 1.03112 0.90605 1.22415 1.02418 0.87539 0.99821 1.23882 1.04997 1.03161 0.89521 1.75038 1.14687 0.99025 1.27976 1.78183 1.21195 1.19721 0.89984 1.45112 1.39446 1.14908 1.10284 0.69096 0.91961 0.91917 0.91895 0.92551 0.94759 0.91440 0.92310 0.91866 0.95254 0.92721 0.88778 1.00422 0.98758 0.92984 0.95656 0.92308 0.87008 0.88302 0.77466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.95 71.98 0.64 -1.82 16 2 C -0.09 -2.30 2.92 -10.79 -0.03 -2.33 16 3 C -0.14 -3.33 9.19 71.98 0.66 -2.67 16 4 C -0.14 -4.33 4.03 30.59 0.12 -4.21 16 5 C 0.07 2.10 4.66 86.30 0.40 2.50 16 6 N -0.54 -20.09 4.69 -900.81 -4.23 -24.31 16 7 C 0.20 10.18 4.54 85.56 0.39 10.57 16 8 C -0.51 -27.66 8.39 25.60 0.21 -27.45 16 9 H 0.06 3.35 7.39 -2.91 -0.02 3.32 16 10 C 0.00 0.14 5.46 84.65 0.46 0.60 16 11 N -0.94 -55.46 13.29 21.45 0.28 -55.18 16 12 Si 0.96 43.36 29.54 68.60 2.03 45.39 16 13 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 14 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 16 C 0.06 1.74 4.72 86.30 0.41 2.14 16 17 C -0.03 -0.61 5.71 29.85 0.17 -0.44 16 18 C 0.01 0.28 6.56 41.36 0.27 0.55 16 19 C -0.06 -1.39 11.99 83.73 1.00 -0.38 16 20 N -0.30 -8.68 12.41 -58.26 -0.72 -9.40 16 21 N -0.11 -2.94 13.38 37.02 0.50 -2.44 16 22 N -0.37 -7.35 6.98 -47.79 -0.33 -7.68 16 23 H 0.46 5.56 8.96 -219.95 -1.97 3.59 16 24 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.06 1.05 6.61 -2.39 -0.02 1.03 16 26 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.73 6.41 -2.38 -0.02 1.71 16 32 H 0.03 1.18 6.21 -2.39 -0.01 1.16 16 33 H 0.05 2.06 6.98 -2.39 -0.02 2.05 16 34 H 0.09 2.28 4.93 -2.39 -0.01 2.27 16 35 H -0.02 -1.19 5.99 -2.39 -0.01 -1.21 16 36 H -0.01 -0.31 7.91 -2.39 -0.02 -0.33 16 37 H 0.26 14.66 8.31 -92.72 -0.77 13.89 16 38 H 0.03 0.77 6.09 -2.39 -0.01 0.75 16 39 H 0.06 1.91 7.92 -2.39 -0.02 1.89 16 40 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.10 1.59 6.52 -2.38 -0.02 1.57 16 42 H 0.21 3.96 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -67.49 333.99 1.28 -66.21 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -0.96 Total: 10.36 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: 4.72 Total: -22.93 kcal Atomic # 7 Polarization: -94.52 SS G_CDS: -4.50 Total: -99.02 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -67.49 1.28 -66.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590602227.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.742 kcal (2) G-P(sol) polarization free energy of solvation -67.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds