Wall clock time and date at job start Mon Mar 30 2020 01:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.46585 * 2 1 4 4 H 1.09002 * 109.46990 * 176.08885 * 3 2 1 5 5 N 1.46901 * 109.47411 * 296.08485 * 3 2 1 6 6 C 1.46901 * 111.00158 * 275.19981 * 5 3 2 7 7 C 1.53043 * 109.45695 * 275.38469 * 6 5 3 8 8 C 1.53194 * 109.31204 * 178.61387 * 7 6 5 9 9 N 1.46932 * 108.77422 * 54.63526 * 8 7 6 10 10 C 1.36934 * 120.62921 * 126.37156 * 9 8 7 11 11 H 1.08004 * 119.99870 * 328.96850 * 10 9 8 12 12 C 1.38804 * 120.00046 * 148.97262 * 10 9 8 13 13 N 1.31620 * 120.00115 * 344.56574 * 12 10 9 14 14 Si 1.86802 * 120.00186 * 164.56315 * 12 10 9 15 15 H 1.48506 * 109.46874 * 89.99975 * 14 12 10 16 16 H 1.48502 * 109.47537 * 210.00021 * 14 12 10 17 17 H 1.48496 * 109.47194 * 330.00447 * 14 12 10 18 18 C 1.46927 * 118.73799 * 306.39160 * 9 8 7 19 19 C 1.53044 * 109.46147 * 155.31885 * 6 5 3 20 20 C 1.52999 * 109.47537 * 56.08843 * 3 2 1 21 21 C 1.53783 * 113.61417 * 159.13329 * 20 3 2 22 22 C 1.53955 * 87.02164 * 220.04849 * 21 20 3 23 23 C 1.53779 * 113.61295 * 61.52712 * 20 3 2 24 24 H 1.08997 * 109.46735 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46833 * 59.96930 * 1 2 3 26 26 H 1.08995 * 109.47025 * 299.96530 * 1 2 3 27 27 H 1.08999 * 109.46905 * 119.99502 * 2 1 3 28 28 H 1.08991 * 109.46834 * 240.00331 * 2 1 3 29 29 H 1.00900 * 110.99905 * 39.14888 * 5 3 2 30 30 H 1.08995 * 109.46046 * 35.34054 * 6 5 3 31 31 H 1.08997 * 109.49757 * 298.56223 * 7 6 5 32 32 H 1.09005 * 109.49764 * 58.66532 * 7 6 5 33 33 H 1.09000 * 109.58819 * 294.84920 * 8 7 6 34 34 H 1.08995 * 109.70512 * 174.49594 * 8 7 6 35 35 H 0.97002 * 120.00522 * 179.97438 * 13 12 10 36 36 H 1.08996 * 109.58513 * 293.82130 * 18 9 8 37 37 H 1.09001 * 109.70434 * 173.46502 * 18 9 8 38 38 H 1.08997 * 109.49140 * 301.33729 * 19 6 5 39 39 H 1.09001 * 109.49652 * 61.43268 * 19 6 5 40 40 H 1.08999 * 112.84957 * 290.32659 * 20 3 2 41 41 H 1.08996 * 113.61930 * 334.56867 * 21 20 3 42 42 H 1.09004 * 113.61531 * 105.47641 * 21 20 3 43 43 H 1.09005 * 113.53600 * 270.81660 * 22 21 20 44 44 H 1.08998 * 113.74615 * 139.94268 * 22 21 20 45 45 H 1.09004 * 113.61707 * 254.53126 * 23 20 3 46 46 H 1.09003 * 113.61550 * 25.43624 * 23 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1277 1.4434 0.0701 5 7 1.6290 2.1072 -1.2439 6 6 2.5820 1.8322 -2.3275 7 6 3.7446 2.8244 -2.2479 8 6 4.7534 2.5128 -3.3578 9 7 4.0506 2.5090 -4.6482 10 6 4.4936 3.2845 -5.6862 11 1 4.9875 4.2239 -5.4859 12 6 4.3077 2.8634 -6.9957 13 7 3.9920 1.6103 -7.2455 14 14 4.5057 4.0751 -8.4035 15 1 5.9172 4.0714 -8.8650 16 1 3.6170 3.6798 -9.5257 17 1 4.1404 5.4375 -7.9391 18 6 2.8633 1.6576 -4.8034 19 6 1.8757 1.9787 -3.6772 20 6 1.4512 2.1916 1.1971 21 6 2.2514 3.4432 1.5948 22 6 1.9985 3.0412 3.0593 23 6 1.8544 1.5952 2.5559 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5143 -0.8897 26 1 -0.3633 0.5133 0.8903 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 0.6937 1.8351 -1.5073 30 1 2.9642 0.8165 -2.2259 31 1 3.3664 3.8388 -2.3742 32 1 4.2327 2.7357 -1.2773 33 1 5.1996 1.5341 -3.1819 34 1 5.5340 3.2735 -3.3691 35 1 3.8617 1.3160 -8.1606 36 1 3.1554 0.6091 -4.7453 37 1 2.3941 1.8534 -5.7676 38 1 1.0336 1.2883 -3.7238 39 1 1.5151 3.0012 -3.7900 40 1 0.3805 2.3709 1.0993 41 1 3.3014 3.4004 1.3054 42 1 1.7702 4.3784 1.3085 43 1 1.0775 3.4540 3.4711 44 1 2.8590 3.1930 3.7109 45 1 1.0532 1.0406 3.0445 46 1 2.7958 1.0462 2.5298 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590645625.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:55 Heat of formation + Delta-G solvation = 22.790954 kcal Electronic energy + Delta-G solvation = -21469.128915 eV Core-core repulsion = 18586.965282 eV Total energy + Delta-G solvation = -2882.163633 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.60750 -37.70862 -35.54929 -33.10107 -31.25434 -29.93676 -28.93522 -26.86412 -25.54642 -24.42857 -24.09217 -22.12925 -21.56063 -20.05810 -19.12281 -18.90290 -16.72642 -15.74774 -15.50777 -15.16798 -14.82878 -14.34395 -13.84246 -13.65550 -13.46342 -13.41882 -12.93322 -12.73928 -12.44386 -12.25458 -12.19671 -11.96341 -11.40304 -11.31508 -11.10349 -11.05720 -10.89105 -10.67666 -10.65461 -10.37417 -10.32692 -10.23717 -10.14233 -10.04108 -9.86724 -9.51061 -9.34489 -8.43280 -7.99165 -6.57286 -5.75014 -3.19618 3.39847 3.46634 3.49720 4.30036 4.53482 4.61919 4.70480 4.83133 4.96759 5.09604 5.11756 5.22282 5.41083 5.47394 5.51867 5.56928 5.66089 5.67688 5.72378 5.76021 5.81994 5.83912 5.86543 6.00670 6.04931 6.08540 6.13216 6.22102 6.26351 6.30456 6.41469 6.52170 6.59483 6.66708 6.71645 6.74290 6.90131 7.11964 7.40998 7.49903 7.68940 7.77888 7.84773 8.51749 9.26601 9.89533 10.48578 11.33735 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.034163 B = 0.004225 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.411198 B = 6625.845275 C = 7081.042871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.154 4.154 3 C 0.097 3.903 4 H 0.075 0.925 5 N -0.681 5.681 6 C 0.097 3.903 7 C -0.115 4.115 8 C 0.144 3.856 9 N -0.591 5.591 10 C -0.252 4.252 11 H 0.063 0.937 12 C 0.004 3.996 13 N -0.904 5.904 14 Si 0.901 3.099 15 H -0.287 1.287 16 H -0.290 1.290 17 H -0.279 1.279 18 C 0.177 3.823 19 C -0.140 4.140 20 C -0.091 4.091 21 C -0.124 4.124 22 C -0.147 4.147 23 C -0.136 4.136 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.334 0.666 30 H 0.034 0.966 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.013 0.987 34 H 0.053 0.947 35 H 0.253 0.747 36 H 0.015 0.985 37 H 0.083 0.917 38 H 0.043 0.957 39 H 0.062 0.938 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.405 -1.518 17.727 18.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.193 4.193 3 C -0.013 4.013 4 H 0.093 0.907 5 N -0.313 5.313 6 C -0.012 4.012 7 C -0.155 4.155 8 C 0.018 3.982 9 N -0.313 5.313 10 C -0.382 4.382 11 H 0.081 0.919 12 C -0.195 4.195 13 N -0.548 5.548 14 Si 0.731 3.269 15 H -0.214 1.214 16 H -0.216 1.216 17 H -0.204 1.204 18 C 0.050 3.950 19 C -0.180 4.180 20 C -0.110 4.110 21 C -0.162 4.162 22 C -0.184 4.184 23 C -0.174 4.174 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.154 0.846 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.031 0.969 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.033 0.967 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.138 -0.981 17.704 18.764 hybrid contribution -0.144 -0.497 -0.999 1.125 sum -6.282 -1.478 16.706 17.909 Atomic orbital electron populations 1.21781 0.95922 1.01301 1.01842 1.22171 0.96517 0.98638 1.02011 1.21603 0.99205 0.90304 0.90223 0.90686 1.60724 1.05619 1.61537 1.03374 1.21432 0.92966 0.96770 0.89998 1.21993 0.96108 0.99487 0.97868 1.20936 0.93151 0.97832 0.86329 1.43994 1.27487 1.51028 1.08835 1.19158 1.35239 0.98784 0.84998 0.91919 1.25108 1.01118 0.95435 0.97804 1.70024 1.52016 1.13845 1.18922 0.86322 0.77556 0.80919 0.82128 1.21396 1.21597 1.20428 1.20664 0.85985 0.92474 0.95844 1.22387 0.98613 1.01193 0.95817 1.22453 0.99826 0.96048 0.92665 1.22830 1.00554 0.98158 0.94644 1.22880 1.01392 0.96940 0.97219 1.22927 1.01371 0.96311 0.96827 0.93116 0.92694 0.92391 0.91866 0.92114 0.84561 0.94829 0.91877 0.93757 0.96950 0.92842 0.93710 0.96661 0.89913 0.93860 0.91932 0.89478 0.90372 0.91660 0.90674 0.91923 0.92018 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.31 37.16 0.35 -1.16 16 2 C -0.15 -1.71 5.53 -26.73 -0.15 -1.86 16 3 C 0.10 1.18 1.95 -67.71 -0.13 1.05 16 4 H 0.07 1.01 6.91 -51.93 -0.36 0.65 16 5 N -0.68 -9.71 6.05 -99.69 -0.60 -10.32 16 6 C 0.10 1.68 2.26 -67.67 -0.15 1.52 16 7 C -0.11 -2.11 5.57 -26.61 -0.15 -2.26 16 8 C 0.14 3.14 6.52 -3.71 -0.02 3.12 16 9 N -0.59 -15.14 2.98 -172.32 -0.51 -15.66 16 10 C -0.25 -7.06 9.56 -15.06 -0.14 -7.21 16 11 H 0.06 1.73 7.88 -52.48 -0.41 1.32 16 12 C 0.00 0.11 4.93 -17.43 -0.09 0.03 16 13 N -0.90 -26.58 11.32 55.49 0.63 -25.95 16 14 Si 0.90 21.93 29.58 -169.99 -5.03 16.91 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 C 0.18 4.28 5.27 -3.71 -0.02 4.26 16 19 C -0.14 -2.72 5.36 -26.61 -0.14 -2.86 16 20 C -0.09 -0.96 2.53 -89.81 -0.23 -1.19 16 21 C -0.12 -1.35 7.65 -25.83 -0.20 -1.55 16 22 C -0.15 -1.33 8.09 -25.82 -0.21 -1.54 16 23 C -0.14 -1.25 6.83 -25.92 -0.18 -1.43 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.57 6.39 -51.93 -0.33 0.24 16 26 H 0.06 0.53 6.61 -51.93 -0.34 0.19 16 27 H 0.06 0.64 7.63 -51.93 -0.40 0.25 16 28 H 0.06 0.77 7.36 -51.93 -0.38 0.39 16 29 H 0.33 4.57 6.10 -39.29 -0.24 4.33 16 30 H 0.03 0.61 7.08 -51.93 -0.37 0.24 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.04 0.73 7.38 -51.93 -0.38 0.35 16 33 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 35 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 2.23 6.25 -51.93 -0.32 1.91 16 38 H 0.04 0.75 8.10 -51.93 -0.42 0.33 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.09 0.94 7.13 -51.93 -0.37 0.57 16 41 H 0.08 0.91 7.99 -51.93 -0.41 0.49 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 LS Contribution 343.05 15.07 5.17 5.17 Total: -1.00 -28.70 343.05 -10.33 -39.03 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -8.52 Total: 1.90 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -1.46 Total: -11.08 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: -0.49 Total: -51.92 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.70 -10.33 -39.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590645625.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.823 kcal (2) G-P(sol) polarization free energy of solvation -28.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds