Wall clock time and date at job start Mon Mar 30 2020 01:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.46585 * 2 1 4 4 H 1.09002 * 109.46990 * 176.08885 * 3 2 1 5 5 N 1.46901 * 109.47411 * 296.08485 * 3 2 1 6 6 C 1.46901 * 111.00158 * 275.19981 * 5 3 2 7 7 C 1.53043 * 109.45695 * 275.38469 * 6 5 3 8 8 C 1.53194 * 109.31204 * 178.61387 * 7 6 5 9 9 N 1.46932 * 108.77422 * 54.63526 * 8 7 6 10 10 C 1.36934 * 120.62921 * 126.37156 * 9 8 7 11 11 H 1.08004 * 119.99870 * 328.96850 * 10 9 8 12 12 C 1.38804 * 120.00046 * 148.97262 * 10 9 8 13 13 N 1.31620 * 120.00115 * 344.56574 * 12 10 9 14 14 Si 1.86802 * 120.00186 * 164.56315 * 12 10 9 15 15 H 1.48506 * 109.46874 * 89.99975 * 14 12 10 16 16 H 1.48502 * 109.47537 * 210.00021 * 14 12 10 17 17 H 1.48496 * 109.47194 * 330.00447 * 14 12 10 18 18 C 1.46927 * 118.73799 * 306.39160 * 9 8 7 19 19 C 1.53044 * 109.46147 * 155.31885 * 6 5 3 20 20 C 1.52999 * 109.47537 * 56.08843 * 3 2 1 21 21 C 1.53783 * 113.61417 * 159.13329 * 20 3 2 22 22 C 1.53955 * 87.02164 * 220.04849 * 21 20 3 23 23 C 1.53779 * 113.61295 * 61.52712 * 20 3 2 24 24 H 1.08997 * 109.46735 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46833 * 59.96930 * 1 2 3 26 26 H 1.08995 * 109.47025 * 299.96530 * 1 2 3 27 27 H 1.08999 * 109.46905 * 119.99502 * 2 1 3 28 28 H 1.08991 * 109.46834 * 240.00331 * 2 1 3 29 29 H 1.00900 * 110.99905 * 39.14888 * 5 3 2 30 30 H 1.08995 * 109.46046 * 35.34054 * 6 5 3 31 31 H 1.08997 * 109.49757 * 298.56223 * 7 6 5 32 32 H 1.09005 * 109.49764 * 58.66532 * 7 6 5 33 33 H 1.09000 * 109.58819 * 294.84920 * 8 7 6 34 34 H 1.08995 * 109.70512 * 174.49594 * 8 7 6 35 35 H 0.97002 * 120.00522 * 179.97438 * 13 12 10 36 36 H 1.08996 * 109.58513 * 293.82130 * 18 9 8 37 37 H 1.09001 * 109.70434 * 173.46502 * 18 9 8 38 38 H 1.08997 * 109.49140 * 301.33729 * 19 6 5 39 39 H 1.09001 * 109.49652 * 61.43268 * 19 6 5 40 40 H 1.08999 * 112.84957 * 290.32659 * 20 3 2 41 41 H 1.08996 * 113.61930 * 334.56867 * 21 20 3 42 42 H 1.09004 * 113.61531 * 105.47641 * 21 20 3 43 43 H 1.09005 * 113.53600 * 270.81660 * 22 21 20 44 44 H 1.08998 * 113.74615 * 139.94268 * 22 21 20 45 45 H 1.09004 * 113.61707 * 254.53126 * 23 20 3 46 46 H 1.09003 * 113.61550 * 25.43624 * 23 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1277 1.4434 0.0701 5 7 1.6290 2.1072 -1.2439 6 6 2.5820 1.8322 -2.3275 7 6 3.7446 2.8244 -2.2479 8 6 4.7534 2.5128 -3.3578 9 7 4.0506 2.5090 -4.6482 10 6 4.4936 3.2845 -5.6862 11 1 4.9875 4.2239 -5.4859 12 6 4.3077 2.8634 -6.9957 13 7 3.9920 1.6103 -7.2455 14 14 4.5057 4.0751 -8.4035 15 1 5.9172 4.0714 -8.8650 16 1 3.6170 3.6798 -9.5257 17 1 4.1404 5.4375 -7.9391 18 6 2.8633 1.6576 -4.8034 19 6 1.8757 1.9787 -3.6772 20 6 1.4512 2.1916 1.1971 21 6 2.2514 3.4432 1.5948 22 6 1.9985 3.0412 3.0593 23 6 1.8544 1.5952 2.5559 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5143 -0.8897 26 1 -0.3633 0.5133 0.8903 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 0.6937 1.8351 -1.5073 30 1 2.9642 0.8165 -2.2259 31 1 3.3664 3.8388 -2.3742 32 1 4.2327 2.7357 -1.2773 33 1 5.1996 1.5341 -3.1819 34 1 5.5340 3.2735 -3.3691 35 1 3.8617 1.3160 -8.1606 36 1 3.1554 0.6091 -4.7453 37 1 2.3941 1.8534 -5.7676 38 1 1.0336 1.2883 -3.7238 39 1 1.5151 3.0012 -3.7900 40 1 0.3805 2.3709 1.0993 41 1 3.3014 3.4004 1.3054 42 1 1.7702 4.3784 1.3085 43 1 1.0775 3.4540 3.4711 44 1 2.8590 3.1930 3.7109 45 1 1.0532 1.0406 3.0445 46 1 2.7958 1.0462 2.5298 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590645625.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:55 Heat of formation + Delta-G solvation = 7.235879 kcal Electronic energy + Delta-G solvation = -21469.803434 eV Core-core repulsion = 18586.965282 eV Total energy + Delta-G solvation = -2882.838152 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.59483 -39.17142 -36.86681 -34.71018 -32.91240 -31.62644 -30.46624 -28.00638 -26.42063 -26.17423 -24.95585 -23.81432 -23.21924 -21.12196 -20.60595 -19.92271 -18.69850 -16.94632 -16.68402 -16.55400 -16.09505 -15.72733 -15.33101 -15.25352 -14.89106 -14.52968 -14.44305 -14.14822 -13.84539 -13.36120 -13.22081 -13.08151 -12.93813 -12.75370 -12.62749 -12.45230 -12.36326 -12.11789 -11.98505 -11.87103 -11.80352 -11.65305 -11.39872 -11.21462 -11.10286 -10.94517 -10.81950 -10.55100 -9.18006 -8.65114 -7.88543 -5.37061 1.46015 1.47350 1.57673 2.50812 3.16368 3.30139 3.68970 3.78233 3.90088 3.97870 4.03915 4.08874 4.17077 4.27230 4.29382 4.40141 4.47182 4.55010 4.64972 4.70726 4.77873 4.84810 4.90664 4.94528 4.95990 4.99012 5.04640 5.11686 5.12235 5.15635 5.19448 5.24060 5.26392 5.31067 5.40340 5.44375 5.51344 5.51967 5.64496 5.72893 5.74860 6.28005 6.40099 6.62632 7.14794 7.84782 8.38792 9.18038 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.034163 B = 0.004225 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.411198 B = 6625.845275 C = 7081.042871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.150 4.150 3 C 0.099 3.901 4 H 0.063 0.937 5 N -0.678 5.678 6 C 0.110 3.890 7 C -0.100 4.100 8 C 0.141 3.859 9 N -0.609 5.609 10 C -0.268 4.268 11 H 0.063 0.937 12 C -0.047 4.047 13 N -0.935 5.935 14 Si 0.968 3.032 15 H -0.283 1.283 16 H -0.291 1.291 17 H -0.271 1.271 18 C 0.184 3.816 19 C -0.126 4.126 20 C -0.088 4.088 21 C -0.132 4.132 22 C -0.139 4.139 23 C -0.129 4.129 24 H 0.057 0.943 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.042 0.958 29 H 0.341 0.659 30 H 0.027 0.973 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.009 0.991 34 H 0.052 0.948 35 H 0.250 0.750 36 H -0.006 1.006 37 H 0.049 0.951 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.229 -1.130 19.616 20.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.189 4.189 3 C -0.011 4.011 4 H 0.081 0.919 5 N -0.310 5.310 6 C 0.000 4.000 7 C -0.140 4.140 8 C 0.015 3.985 9 N -0.333 5.333 10 C -0.398 4.398 11 H 0.080 0.920 12 C -0.242 4.242 13 N -0.581 5.581 14 Si 0.795 3.205 15 H -0.210 1.210 16 H -0.217 1.217 17 H -0.195 1.195 18 C 0.057 3.943 19 C -0.165 4.165 20 C -0.107 4.107 21 C -0.170 4.170 22 C -0.177 4.177 23 C -0.167 4.167 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.061 0.939 29 H 0.162 0.838 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.027 0.973 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.012 0.988 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.108 0.892 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.103 0.897 44 H 0.087 0.913 45 H 0.093 0.907 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.965 -0.588 19.632 20.839 hybrid contribution 0.149 -0.639 -1.543 1.677 sum -6.816 -1.226 18.089 19.369 Atomic orbital electron populations 1.21764 0.94815 1.01913 1.02085 1.22114 0.97431 0.97616 1.01763 1.21643 0.98669 0.91177 0.89649 0.91890 1.60662 1.05255 1.62017 1.03053 1.21151 0.92984 0.95998 0.89853 1.21789 0.95731 0.99003 0.97440 1.21068 0.93974 0.97598 0.85859 1.44263 1.28433 1.50932 1.09653 1.19484 1.35064 0.99158 0.86073 0.91957 1.25874 1.01259 0.96998 1.00113 1.70176 1.53226 1.15557 1.19113 0.85280 0.77387 0.78976 0.78821 1.20964 1.21682 1.19539 1.20468 0.86538 0.91082 0.96168 1.22145 0.98016 1.01068 0.95281 1.22431 0.99765 0.95937 0.92592 1.22853 0.99886 0.97923 0.96326 1.22857 1.02104 0.96649 0.96070 1.22894 1.01777 0.96494 0.95550 0.92383 0.93291 0.91255 0.90589 0.93908 0.83839 0.95480 0.92929 0.91473 0.97330 0.92912 0.94057 0.98839 0.93231 0.91721 0.92745 0.89174 0.91389 0.92484 0.89739 0.91319 0.90720 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.31 71.99 0.67 -1.91 16 2 C -0.15 -3.03 5.53 30.60 0.17 -2.86 16 3 C 0.10 2.20 1.95 44.91 0.09 2.29 16 4 H 0.06 1.58 6.91 -2.39 -0.02 1.57 16 5 N -0.68 -18.23 6.05 -469.32 -2.84 -21.07 16 6 C 0.11 3.69 2.26 44.94 0.10 3.79 16 7 C -0.10 -3.60 5.57 30.67 0.17 -3.43 16 8 C 0.14 6.17 6.52 86.36 0.56 6.73 16 9 N -0.61 -31.87 2.98 -699.10 -2.08 -33.95 16 10 C -0.27 -15.24 9.56 84.03 0.80 -14.43 16 11 H 0.06 3.48 7.88 -2.91 -0.02 3.45 16 12 C -0.05 -2.68 4.93 84.86 0.42 -2.26 16 13 N -0.94 -56.42 11.32 21.65 0.25 -56.18 16 14 Si 0.97 45.64 29.58 68.60 2.03 47.67 16 15 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 16 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 18 C 0.18 9.15 5.27 86.36 0.46 9.61 16 19 C -0.13 -4.85 5.36 30.67 0.16 -4.68 16 20 C -0.09 -1.66 2.53 -10.27 -0.03 -1.68 16 21 C -0.13 -2.62 7.65 31.18 0.24 -2.39 16 22 C -0.14 -2.16 8.09 31.18 0.25 -1.91 16 23 C -0.13 -1.98 6.83 31.12 0.21 -1.77 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.05 0.91 6.39 -2.39 -0.02 0.89 16 26 H 0.07 1.05 6.61 -2.39 -0.02 1.04 16 27 H 0.08 1.35 7.63 -2.39 -0.02 1.33 16 28 H 0.04 1.02 7.36 -2.39 -0.02 1.00 16 29 H 0.34 8.64 6.10 -89.69 -0.55 8.09 16 30 H 0.03 0.96 7.08 -2.39 -0.02 0.95 16 31 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.07 2.12 7.38 -2.38 -0.02 2.10 16 33 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.05 2.27 7.93 -2.39 -0.02 2.25 16 35 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 36 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 37 H 0.05 2.77 6.25 -2.39 -0.01 2.76 16 38 H 0.06 2.20 8.10 -2.39 -0.02 2.18 16 39 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.09 1.68 7.13 -2.39 -0.02 1.66 16 41 H 0.07 1.48 7.99 -2.39 -0.02 1.46 16 42 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 44 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 45 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 46 H 0.08 1.22 8.10 -2.39 -0.02 1.20 16 Total: -1.00 -62.19 343.05 2.01 -60.18 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 0.38 Total: 18.24 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: 4.28 Total: -14.89 kcal Atomic # 7 Polarization: -106.52 SS G_CDS: -4.68 Total: -111.20 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -62.19 2.01 -60.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590645625.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.420 kcal (2) G-P(sol) polarization free energy of solvation -62.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds