Wall clock time and date at job start Mon Mar 30 2020 01:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47346 * 2 1 4 4 H 1.09008 * 109.46959 * 53.11240 * 3 2 1 5 5 N 1.46898 * 109.47237 * 293.10746 * 3 2 1 6 6 C 1.46901 * 110.99450 * 87.75837 * 5 3 2 7 7 C 1.53042 * 109.45804 * 215.01689 * 6 5 3 8 8 C 1.53193 * 109.31322 * 178.61527 * 7 6 5 9 9 N 1.46926 * 108.89511 * 54.56450 * 8 7 6 10 10 C 1.36937 * 120.63274 * 126.45696 * 9 8 7 11 11 H 1.07996 * 119.99862 * 305.41912 * 10 9 8 12 12 C 1.38813 * 119.99707 * 125.41448 * 10 9 8 13 13 N 1.31611 * 119.99930 * 332.15779 * 12 10 9 14 14 Si 1.86801 * 119.99957 * 152.16269 * 12 10 9 15 15 H 1.48501 * 109.47069 * 59.99705 * 14 12 10 16 16 H 1.48495 * 109.47178 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46935 * 300.00089 * 14 12 10 18 18 C 1.46962 * 118.71282 * 306.64600 * 9 8 7 19 19 C 1.53044 * 109.46076 * 94.95449 * 6 5 3 20 20 C 1.53001 * 109.47095 * 173.10673 * 3 2 1 21 21 H 1.08998 * 115.55171 * 206.31647 * 20 3 2 22 22 C 1.53006 * 117.49781 * 60.65399 * 20 3 2 23 23 C 1.52995 * 60.00073 * 252.51021 * 22 20 3 24 24 H 1.09000 * 117.50447 * 107.48884 * 23 22 20 25 25 C 1.53004 * 117.49685 * 252.51393 * 23 22 20 26 26 H 1.09005 * 109.47104 * 308.37141 * 1 2 3 27 27 H 1.09000 * 109.46762 * 68.36843 * 1 2 3 28 28 H 1.08996 * 109.47525 * 188.36631 * 1 2 3 29 29 H 1.09002 * 109.47197 * 239.99959 * 2 1 3 30 30 H 1.09005 * 109.47226 * 120.00027 * 2 1 3 31 31 H 1.00900 * 111.00215 * 211.70956 * 5 3 2 32 32 H 1.09002 * 109.45136 * 334.98756 * 6 5 3 33 33 H 1.09004 * 109.49651 * 58.66500 * 7 6 5 34 34 H 1.08998 * 109.50205 * 298.56557 * 7 6 5 35 35 H 1.09005 * 109.58936 * 174.42554 * 8 7 6 36 36 H 1.09005 * 109.58489 * 294.70737 * 8 7 6 37 37 H 0.97007 * 119.99978 * 180.02562 * 13 12 10 38 38 H 1.09003 * 109.46562 * 293.56281 * 18 9 8 39 39 H 1.09005 * 109.70919 * 173.28472 * 18 9 8 40 40 H 1.09000 * 109.49437 * 301.33295 * 19 6 5 41 41 H 1.08992 * 109.49900 * 61.43062 * 19 6 5 42 42 H 1.09004 * 117.49781 * 0.02562 * 22 20 3 43 43 H 1.08997 * 117.49801 * 145.01262 * 22 20 3 44 44 H 1.08999 * 109.47345 * 128.62192 * 25 23 22 45 45 H 1.09004 * 109.46704 * 248.62432 * 25 23 22 46 46 H 1.09003 * 109.47071 * 8.61830 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5795 1.9907 0.8220 5 7 1.6908 2.0854 -1.2738 6 6 0.3538 2.6906 -1.2089 7 6 -0.3323 2.5584 -2.5704 8 6 -1.7390 3.1595 -2.4893 9 7 -1.6390 4.5397 -1.9957 10 6 -2.2051 5.5731 -2.6934 11 1 -1.9553 5.7233 -3.7333 12 6 -3.1000 6.4274 -2.0641 13 7 -3.8213 5.9952 -1.0517 14 14 -3.2806 8.1905 -2.6543 15 1 -3.7177 8.1951 -4.0735 16 1 -4.2930 8.8896 -1.8228 17 1 -1.9751 8.8882 -2.5362 18 6 -0.9160 4.7901 -0.7409 19 6 0.4815 4.1708 -0.8416 20 6 3.5602 1.4459 0.1731 21 1 3.9800 2.3451 0.6239 22 6 4.3944 0.7355 -0.8948 23 6 4.2377 0.1120 0.4935 24 1 3.6005 -0.7679 0.5811 25 6 5.4529 0.1422 1.4227 26 1 -0.3633 0.6380 0.8057 27 1 -0.3633 0.3788 -0.9553 28 1 -0.3634 -1.0167 0.1495 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.3849 2.7691 -1.5360 32 1 -0.2400 2.1785 -0.4517 33 1 -0.4019 1.5051 -2.8421 34 1 0.2481 3.0913 -3.3236 35 1 -2.1949 3.1577 -3.4795 36 1 -2.3494 2.5701 -1.8051 37 1 -4.4470 6.5921 -0.6121 38 1 -1.4585 4.3352 0.0879 39 1 -0.8287 5.8639 -0.5749 40 1 0.9912 4.2651 0.1172 41 1 1.0542 4.6884 -1.6110 42 1 3.8602 0.2661 -1.7209 43 1 5.3631 1.1673 -1.1463 44 1 5.1621 0.5567 2.3879 45 1 5.8297 -0.8712 1.5611 46 1 6.2328 0.7626 0.9810 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591239006.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:03 Heat of formation + Delta-G solvation = 27.929989 kcal Electronic energy + Delta-G solvation = -21352.260167 eV Core-core repulsion = 18470.319380 eV Total energy + Delta-G solvation = -2881.940788 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.39348 -37.53820 -35.01062 -32.78867 -31.43585 -29.91556 -29.65707 -28.30827 -25.84519 -24.11228 -22.56315 -22.04466 -21.48719 -20.77447 -19.66802 -18.60153 -16.77024 -15.87538 -15.62198 -14.77765 -14.51081 -14.22931 -13.63434 -13.55964 -13.37338 -13.25476 -13.09632 -12.88177 -12.76772 -12.41270 -12.18228 -12.00970 -11.59347 -11.35229 -11.20663 -11.08128 -10.86048 -10.78580 -10.57729 -10.53789 -10.29514 -10.16158 -9.98993 -9.95731 -9.89129 -9.73667 -9.33232 -8.33165 -7.96023 -6.36605 -5.69641 -3.50650 3.36218 3.42429 3.45726 3.63220 4.44078 4.48451 4.60301 4.81444 4.90616 5.03114 5.14997 5.24013 5.27726 5.38907 5.47313 5.59037 5.62354 5.63342 5.71518 5.75148 5.81074 5.83222 5.92048 5.96029 5.99587 6.13188 6.18952 6.20881 6.25302 6.32241 6.42996 6.48041 6.54327 6.64110 6.68108 6.77228 7.02565 7.08095 7.15542 7.33352 7.52668 7.78195 7.89084 8.68145 9.25248 9.78055 10.58367 11.16656 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.035289 B = 0.004055 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.260561 B = 6903.375380 C = 7173.521594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.111 4.111 3 C 0.117 3.883 4 H 0.046 0.954 5 N -0.679 5.679 6 C 0.087 3.913 7 C -0.115 4.115 8 C 0.145 3.855 9 N -0.582 5.582 10 C -0.286 4.286 11 H 0.050 0.950 12 C 0.038 3.962 13 N -0.867 5.867 14 Si 0.886 3.114 15 H -0.278 1.278 16 H -0.291 1.291 17 H -0.280 1.280 18 C 0.171 3.829 19 C -0.161 4.161 20 C -0.156 4.156 21 H 0.098 0.902 22 C -0.161 4.161 23 C -0.157 4.157 24 H 0.111 0.889 25 C -0.122 4.122 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.337 0.663 32 H 0.077 0.923 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.014 0.986 37 H 0.255 0.745 38 H 0.017 0.983 39 H 0.052 0.948 40 H 0.041 0.959 41 H 0.057 0.943 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.603 -11.383 3.993 18.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.149 4.149 3 C 0.007 3.993 4 H 0.064 0.936 5 N -0.309 5.309 6 C -0.022 4.022 7 C -0.155 4.155 8 C 0.019 3.981 9 N -0.305 5.305 10 C -0.416 4.416 11 H 0.068 0.932 12 C -0.167 4.167 13 N -0.505 5.505 14 Si 0.714 3.286 15 H -0.203 1.203 16 H -0.216 1.216 17 H -0.206 1.206 18 C 0.044 3.956 19 C -0.202 4.202 20 C -0.175 4.175 21 H 0.116 0.884 22 C -0.198 4.198 23 C -0.176 4.176 24 H 0.129 0.871 25 C -0.180 4.180 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.156 0.844 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.032 0.968 37 H 0.065 0.935 38 H 0.035 0.965 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.119 0.881 43 H 0.106 0.894 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.210 -11.903 3.823 18.926 hybrid contribution 0.023 1.894 0.466 1.951 sum 14.233 -10.009 4.290 17.921 Atomic orbital electron populations 1.21948 0.95886 1.00773 1.02791 1.21662 0.96044 0.95996 1.01171 1.21033 0.91252 0.95534 0.91501 0.93576 1.60770 1.04240 1.36214 1.29645 1.21754 0.89004 0.92878 0.98548 1.21992 0.98225 0.99362 0.95914 1.21013 0.92308 0.87125 0.97673 1.43710 1.60953 1.01256 1.24589 1.18701 1.21049 1.06061 0.95770 0.93227 1.25595 0.93809 0.99619 0.97638 1.70203 1.21472 1.34261 1.24532 0.86690 0.77500 0.85790 0.78649 1.20334 1.21645 1.20569 1.20706 0.87886 0.97845 0.89183 1.22763 1.01012 0.97051 0.99372 1.22586 0.94237 0.96174 1.04512 0.88404 1.23016 1.00737 1.03560 0.92501 1.22564 0.99962 0.97075 0.97966 0.87150 1.21368 0.96172 1.01649 0.98768 0.93170 0.91119 0.93507 0.91512 0.92249 0.84445 0.90496 0.92942 0.92724 0.92808 0.96842 0.93504 0.96494 0.92958 0.93998 0.92402 0.88127 0.89429 0.92436 0.92371 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 8.39 37.16 0.31 -1.70 16 2 C -0.11 -1.29 4.25 -26.73 -0.11 -1.40 16 3 C 0.12 1.44 2.59 -67.71 -0.18 1.27 16 4 H 0.05 0.64 7.71 -51.92 -0.40 0.24 16 5 N -0.68 -9.46 5.95 -99.69 -0.59 -10.05 16 6 C 0.09 1.46 1.31 -67.67 -0.09 1.37 16 7 C -0.12 -2.11 5.48 -26.61 -0.15 -2.25 16 8 C 0.14 3.23 6.51 -3.71 -0.02 3.21 16 9 N -0.58 -14.85 2.79 -172.28 -0.48 -15.33 16 10 C -0.29 -8.04 9.10 -15.06 -0.14 -8.18 16 11 H 0.05 1.41 7.97 -52.49 -0.42 0.99 16 12 C 0.04 1.07 4.97 -17.43 -0.09 0.99 16 13 N -0.87 -25.64 13.58 55.49 0.75 -24.89 16 14 Si 0.89 21.48 29.64 -169.99 -5.04 16.45 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 C 0.17 3.98 6.07 -3.69 -0.02 3.96 16 19 C -0.16 -2.99 5.32 -26.61 -0.14 -3.13 16 20 C -0.16 -1.66 5.41 -90.62 -0.49 -2.15 16 21 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 22 C -0.16 -1.58 9.47 -26.73 -0.25 -1.84 16 23 C -0.16 -1.46 5.45 -90.62 -0.49 -1.96 16 24 H 0.11 1.03 5.78 -51.93 -0.30 0.73 16 25 C -0.12 -0.97 10.19 37.16 0.38 -0.60 16 26 H 0.05 0.67 7.55 -51.93 -0.39 0.28 16 27 H 0.07 1.02 5.73 -51.93 -0.30 0.72 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.79 7.58 -51.93 -0.39 0.40 16 30 H 0.06 0.62 6.50 -51.93 -0.34 0.28 16 31 H 0.34 4.67 7.92 -39.29 -0.31 4.36 16 32 H 0.08 1.35 4.89 -51.93 -0.25 1.09 16 33 H 0.05 0.89 7.56 -51.93 -0.39 0.49 16 34 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.05 1.22 7.93 -51.93 -0.41 0.80 16 36 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.05 1.30 7.78 -51.93 -0.40 0.90 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.10 1.07 7.73 -51.93 -0.40 0.67 16 43 H 0.09 0.80 8.05 -51.93 -0.42 0.38 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.05 0.41 7.90 -51.93 -0.41 0.00 16 LS Contribution 347.95 15.07 5.24 5.24 Total: -1.00 -28.68 347.95 -10.08 -38.76 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -8.48 Total: 2.24 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -1.48 Total: -12.41 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.32 Total: -50.27 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.04 Total: 16.45 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.68 -10.08 -38.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591239006.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.688 kcal (2) G-P(sol) polarization free energy of solvation -28.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds