Wall clock time and date at job start Mon Mar 30 2020 01:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47346 * 2 1 4 4 H 1.09008 * 109.46959 * 53.11240 * 3 2 1 5 5 N 1.46898 * 109.47237 * 293.10746 * 3 2 1 6 6 C 1.46901 * 110.99450 * 87.75837 * 5 3 2 7 7 C 1.53042 * 109.45804 * 215.01689 * 6 5 3 8 8 C 1.53193 * 109.31322 * 178.61527 * 7 6 5 9 9 N 1.46926 * 108.89511 * 54.56450 * 8 7 6 10 10 C 1.36937 * 120.63274 * 126.45696 * 9 8 7 11 11 H 1.07996 * 119.99862 * 305.41912 * 10 9 8 12 12 C 1.38813 * 119.99707 * 125.41448 * 10 9 8 13 13 N 1.31611 * 119.99930 * 332.15779 * 12 10 9 14 14 Si 1.86801 * 119.99957 * 152.16269 * 12 10 9 15 15 H 1.48501 * 109.47069 * 59.99705 * 14 12 10 16 16 H 1.48495 * 109.47178 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46935 * 300.00089 * 14 12 10 18 18 C 1.46962 * 118.71282 * 306.64600 * 9 8 7 19 19 C 1.53044 * 109.46076 * 94.95449 * 6 5 3 20 20 C 1.53001 * 109.47095 * 173.10673 * 3 2 1 21 21 H 1.08998 * 115.55171 * 206.31647 * 20 3 2 22 22 C 1.53006 * 117.49781 * 60.65399 * 20 3 2 23 23 C 1.52995 * 60.00073 * 252.51021 * 22 20 3 24 24 H 1.09000 * 117.50447 * 107.48884 * 23 22 20 25 25 C 1.53004 * 117.49685 * 252.51393 * 23 22 20 26 26 H 1.09005 * 109.47104 * 308.37141 * 1 2 3 27 27 H 1.09000 * 109.46762 * 68.36843 * 1 2 3 28 28 H 1.08996 * 109.47525 * 188.36631 * 1 2 3 29 29 H 1.09002 * 109.47197 * 239.99959 * 2 1 3 30 30 H 1.09005 * 109.47226 * 120.00027 * 2 1 3 31 31 H 1.00900 * 111.00215 * 211.70956 * 5 3 2 32 32 H 1.09002 * 109.45136 * 334.98756 * 6 5 3 33 33 H 1.09004 * 109.49651 * 58.66500 * 7 6 5 34 34 H 1.08998 * 109.50205 * 298.56557 * 7 6 5 35 35 H 1.09005 * 109.58936 * 174.42554 * 8 7 6 36 36 H 1.09005 * 109.58489 * 294.70737 * 8 7 6 37 37 H 0.97007 * 119.99978 * 180.02562 * 13 12 10 38 38 H 1.09003 * 109.46562 * 293.56281 * 18 9 8 39 39 H 1.09005 * 109.70919 * 173.28472 * 18 9 8 40 40 H 1.09000 * 109.49437 * 301.33295 * 19 6 5 41 41 H 1.08992 * 109.49900 * 61.43062 * 19 6 5 42 42 H 1.09004 * 117.49781 * 0.02562 * 22 20 3 43 43 H 1.08997 * 117.49801 * 145.01262 * 22 20 3 44 44 H 1.08999 * 109.47345 * 128.62192 * 25 23 22 45 45 H 1.09004 * 109.46704 * 248.62432 * 25 23 22 46 46 H 1.09003 * 109.47071 * 8.61830 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5795 1.9907 0.8220 5 7 1.6908 2.0854 -1.2738 6 6 0.3538 2.6906 -1.2089 7 6 -0.3323 2.5584 -2.5704 8 6 -1.7390 3.1595 -2.4893 9 7 -1.6390 4.5397 -1.9957 10 6 -2.2051 5.5731 -2.6934 11 1 -1.9553 5.7233 -3.7333 12 6 -3.1000 6.4274 -2.0641 13 7 -3.8213 5.9952 -1.0517 14 14 -3.2806 8.1905 -2.6543 15 1 -3.7177 8.1951 -4.0735 16 1 -4.2930 8.8896 -1.8228 17 1 -1.9751 8.8882 -2.5362 18 6 -0.9160 4.7901 -0.7409 19 6 0.4815 4.1708 -0.8416 20 6 3.5602 1.4459 0.1731 21 1 3.9800 2.3451 0.6239 22 6 4.3944 0.7355 -0.8948 23 6 4.2377 0.1120 0.4935 24 1 3.6005 -0.7679 0.5811 25 6 5.4529 0.1422 1.4227 26 1 -0.3633 0.6380 0.8057 27 1 -0.3633 0.3788 -0.9553 28 1 -0.3634 -1.0167 0.1495 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.3849 2.7691 -1.5360 32 1 -0.2400 2.1785 -0.4517 33 1 -0.4019 1.5051 -2.8421 34 1 0.2481 3.0913 -3.3236 35 1 -2.1949 3.1577 -3.4795 36 1 -2.3494 2.5701 -1.8051 37 1 -4.4470 6.5921 -0.6121 38 1 -1.4585 4.3352 0.0879 39 1 -0.8287 5.8639 -0.5749 40 1 0.9912 4.2651 0.1172 41 1 1.0542 4.6884 -1.6110 42 1 3.8602 0.2661 -1.7209 43 1 5.3631 1.1673 -1.1463 44 1 5.1621 0.5567 2.3879 45 1 5.8297 -0.8712 1.5611 46 1 6.2328 0.7626 0.9810 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591239006.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:02 Heat of formation + Delta-G solvation = 12.384206 kcal Electronic energy + Delta-G solvation = -21352.934283 eV Core-core repulsion = 18470.319380 eV Total energy + Delta-G solvation = -2882.614904 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.46119 -38.93917 -36.40305 -34.42490 -32.96560 -31.64829 -31.02102 -29.28008 -27.19142 -25.78164 -23.77852 -23.49604 -23.05205 -21.65298 -21.09028 -19.80762 -18.66235 -17.00813 -16.75483 -16.65336 -15.87674 -15.44330 -15.43450 -14.94105 -14.71867 -14.53342 -14.37029 -14.02254 -13.87150 -13.71770 -13.38993 -13.23328 -12.98945 -12.83131 -12.68623 -12.57713 -12.43226 -12.27915 -12.03102 -11.94686 -11.82823 -11.54267 -11.43080 -11.35288 -11.09717 -10.77257 -10.55831 -10.48186 -9.18891 -8.49689 -7.77447 -5.69776 1.42445 1.45202 1.53157 2.45186 2.80304 3.09016 3.39937 3.71952 3.75841 3.91940 4.00917 4.10128 4.17408 4.23679 4.34632 4.36133 4.47110 4.53039 4.54780 4.70788 4.78891 4.80101 4.82866 4.88181 4.98240 4.99801 5.03906 5.06726 5.10555 5.14959 5.17104 5.24767 5.27127 5.31633 5.34865 5.36710 5.44851 5.50023 5.54906 5.61130 5.68317 6.26631 6.50236 6.61726 7.17123 7.73156 8.47780 9.01287 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.035289 B = 0.004055 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.260561 B = 6903.375380 C = 7173.521594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.105 4.105 3 C 0.117 3.883 4 H 0.033 0.967 5 N -0.669 5.669 6 C 0.100 3.900 7 C -0.099 4.099 8 C 0.143 3.857 9 N -0.599 5.599 10 C -0.302 4.302 11 H 0.043 0.957 12 C -0.010 4.010 13 N -0.905 5.905 14 Si 0.955 3.045 15 H -0.269 1.269 16 H -0.289 1.289 17 H -0.274 1.274 18 C 0.175 3.825 19 C -0.146 4.146 20 C -0.165 4.165 21 H 0.098 0.902 22 C -0.158 4.158 23 C -0.147 4.147 24 H 0.113 0.887 25 C -0.122 4.122 26 H 0.038 0.962 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.341 0.659 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.043 0.957 36 H 0.001 0.999 37 H 0.255 0.745 38 H -0.004 1.004 39 H 0.028 0.972 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.606 -12.091 3.986 20.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.142 4.142 3 C 0.008 3.992 4 H 0.051 0.949 5 N -0.299 5.299 6 C -0.010 4.010 7 C -0.139 4.139 8 C 0.018 3.982 9 N -0.324 5.324 10 C -0.433 4.433 11 H 0.061 0.939 12 C -0.211 4.211 13 N -0.544 5.544 14 Si 0.780 3.220 15 H -0.194 1.194 16 H -0.215 1.215 17 H -0.200 1.200 18 C 0.048 3.952 19 C -0.186 4.186 20 C -0.184 4.184 21 H 0.116 0.884 22 C -0.195 4.195 23 C -0.166 4.166 24 H 0.131 0.869 25 C -0.179 4.179 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.160 0.840 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.019 0.981 37 H 0.064 0.936 38 H 0.014 0.986 39 H 0.046 0.954 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 16.240 -12.627 3.806 20.920 hybrid contribution -0.616 2.048 0.477 2.191 sum 15.624 -10.579 4.283 19.348 Atomic orbital electron populations 1.21922 0.96870 1.01247 1.01268 1.21630 0.95013 0.95564 1.02036 1.21051 0.92666 0.95548 0.89970 0.94931 1.60711 1.02783 1.35647 1.30791 1.21502 0.90556 0.91638 0.97276 1.21772 0.95453 0.99873 0.96773 1.21067 0.94804 0.85828 0.96540 1.43966 1.61444 1.02010 1.24942 1.18947 1.21121 1.07211 0.95977 0.93912 1.26365 0.93392 1.03389 0.97973 1.70300 1.22447 1.35563 1.26138 0.85601 0.77489 0.80488 0.78374 1.19417 1.21493 1.19971 1.20602 0.90233 0.96571 0.87753 1.22578 0.97681 0.97895 1.00476 1.22484 0.92902 0.97172 1.05825 0.88354 1.23018 1.00769 1.03270 0.92430 1.22638 1.00078 0.96118 0.97741 0.86898 1.21386 0.95620 1.02477 0.98441 0.94258 0.92956 0.92143 0.91305 0.90615 0.84001 0.91076 0.91079 0.93133 0.93820 0.98051 0.93562 0.98573 0.95381 0.92041 0.92471 0.88824 0.88552 0.92320 0.91269 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.80 8.39 71.98 0.60 -3.19 16 2 C -0.10 -2.21 4.25 30.59 0.13 -2.08 16 3 C 0.12 2.68 2.59 44.92 0.12 2.80 16 4 H 0.03 0.85 7.71 -2.38 -0.02 0.84 16 5 N -0.67 -17.47 5.95 -469.31 -2.79 -20.27 16 6 C 0.10 3.27 1.31 44.94 0.06 3.32 16 7 C -0.10 -3.56 5.48 30.67 0.17 -3.39 16 8 C 0.14 6.51 6.51 86.36 0.56 7.07 16 9 N -0.60 -31.34 2.79 -698.98 -1.95 -33.29 16 10 C -0.30 -17.34 9.10 84.03 0.76 -16.58 16 11 H 0.04 2.48 7.97 -2.91 -0.02 2.46 16 12 C -0.01 -0.56 4.97 84.86 0.42 -0.13 16 13 N -0.91 -54.81 13.58 21.65 0.29 -54.51 16 14 Si 0.95 44.70 29.64 68.60 2.03 46.74 16 15 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 16 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 17 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 18 C 0.17 8.36 6.07 86.35 0.52 8.89 16 19 C -0.15 -5.33 5.32 30.67 0.16 -5.16 16 20 C -0.17 -3.13 5.41 -10.79 -0.06 -3.18 16 21 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 22 C -0.16 -2.70 9.47 30.59 0.29 -2.41 16 23 C -0.15 -2.33 5.45 -10.79 -0.06 -2.39 16 24 H 0.11 1.75 5.78 -2.39 -0.01 1.73 16 25 C -0.12 -1.60 10.19 71.98 0.73 -0.87 16 26 H 0.04 1.02 7.55 -2.38 -0.02 1.01 16 27 H 0.05 1.46 5.73 -2.39 -0.01 1.44 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.07 1.46 7.58 -2.39 -0.02 1.44 16 30 H 0.08 1.38 6.50 -2.38 -0.02 1.36 16 31 H 0.34 8.70 7.92 -89.69 -0.71 7.99 16 32 H 0.07 2.46 4.89 -2.39 -0.01 2.45 16 33 H 0.07 2.31 7.56 -2.38 -0.02 2.29 16 34 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.04 2.02 7.93 -2.38 -0.02 2.00 16 36 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 37 H 0.26 14.74 8.31 -92.70 -0.77 13.97 16 38 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 39 H 0.03 1.43 7.78 -2.38 -0.02 1.41 16 40 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.09 1.76 7.73 -2.38 -0.02 1.74 16 43 H 0.10 1.49 8.05 -2.39 -0.02 1.47 16 44 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 46 H 0.06 0.72 7.90 -2.39 -0.02 0.70 16 Total: -1.00 -62.07 347.95 2.22 -59.85 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.22 Total: 18.79 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: 4.42 Total: -17.30 kcal Atomic # 7 Polarization: -103.62 SS G_CDS: -4.45 Total: -108.07 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.74 kcal Total: -62.07 2.22 -59.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591239006.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.233 kcal (2) G-P(sol) polarization free energy of solvation -62.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds