Wall clock time and date at job start Mon Mar 30 2020 01:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47478 * 2 1 4 4 H 1.08999 * 109.47040 * 184.54463 * 3 2 1 5 5 N 1.46898 * 109.46998 * 64.54398 * 3 2 1 6 6 C 1.46910 * 110.99862 * 153.09077 * 5 3 2 7 7 C 1.53043 * 109.45775 * 273.72711 * 6 5 3 8 8 C 1.53197 * 109.30634 * 178.60219 * 7 6 5 9 9 N 1.46916 * 108.77087 * 54.65347 * 8 7 6 10 10 C 1.36935 * 120.63595 * 126.40170 * 9 8 7 11 11 H 1.07993 * 120.00612 * 208.88410 * 10 9 8 12 12 C 1.38820 * 119.99616 * 28.88491 * 10 9 8 13 13 N 1.31621 * 119.99649 * 16.05831 * 12 10 9 14 14 Si 1.86798 * 119.99873 * 196.05364 * 12 10 9 15 15 H 1.48498 * 109.47023 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46804 * 120.00114 * 14 12 10 17 17 H 1.48498 * 109.47165 * 239.99762 * 14 12 10 18 18 C 1.46935 * 118.73771 * 306.38694 * 9 8 7 19 19 C 1.53038 * 109.45695 * 153.67176 * 6 5 3 20 20 C 1.52999 * 109.46968 * 304.55031 * 3 2 1 21 21 H 1.08996 * 115.55192 * 78.87876 * 20 3 2 22 22 C 1.53003 * 117.49600 * 224.54821 * 20 3 2 23 23 C 1.52999 * 117.49651 * 293.20547 * 20 3 2 24 24 H 1.09005 * 117.49803 * 144.99680 * 23 20 3 25 25 C 1.52999 * 117.50147 * 0.02562 * 23 20 3 26 26 H 1.08995 * 109.47540 * 177.77976 * 1 2 3 27 27 H 1.08994 * 109.46836 * 57.77126 * 1 2 3 28 28 H 1.09004 * 109.46644 * 297.77924 * 1 2 3 29 29 H 1.09005 * 109.46524 * 119.99800 * 2 1 3 30 30 H 1.08994 * 109.46991 * 239.99447 * 2 1 3 31 31 H 1.00892 * 111.00585 * 277.04720 * 5 3 2 32 32 H 1.08992 * 109.45352 * 33.69540 * 6 5 3 33 33 H 1.08998 * 109.49590 * 298.55802 * 7 6 5 34 34 H 1.08992 * 109.50136 * 58.66412 * 7 6 5 35 35 H 1.09002 * 109.59476 * 294.86081 * 8 7 6 36 36 H 1.08997 * 109.58080 * 174.43738 * 8 7 6 37 37 H 0.97000 * 119.99622 * 180.02562 * 13 12 10 38 38 H 1.08997 * 109.58473 * 293.81617 * 18 9 8 39 39 H 1.08998 * 109.58349 * 173.39403 * 18 9 8 40 40 H 1.08999 * 109.50000 * 301.33185 * 19 6 5 41 41 H 1.08992 * 109.50300 * 61.43566 * 19 6 5 42 42 H 1.08998 * 117.50072 * 214.97625 * 22 20 3 43 43 H 1.09003 * 117.49703 * 0.02562 * 22 20 3 44 44 H 1.09004 * 109.47556 * 69.33765 * 25 23 20 45 45 H 1.08999 * 109.47557 * 189.34116 * 25 23 20 46 46 H 1.09010 * 109.46733 * 309.34268 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1271 1.4435 -0.0814 5 7 1.6421 2.1025 1.2505 6 6 2.5775 3.1810 1.5974 7 6 3.7525 2.6018 2.3888 8 6 4.7428 3.7231 2.7185 9 7 4.0232 4.8014 3.4097 10 6 4.4619 5.2694 4.6195 11 1 3.7573 5.6804 5.3272 12 6 5.8124 5.2156 4.9361 13 7 6.7034 5.0196 3.9874 14 14 6.3650 5.4215 6.7086 15 1 5.1778 5.6272 7.5765 16 1 7.0916 4.2022 7.1453 17 1 7.2650 6.5980 6.8130 18 6 2.8238 5.3684 2.7780 19 6 1.8551 4.2286 2.4474 20 6 1.4389 2.1960 -1.1881 21 1 0.4114 2.5358 -1.0580 22 6 2.3770 3.0812 -2.0111 23 6 1.8664 1.7597 -2.5908 24 1 1.1202 1.8125 -3.3837 25 6 2.8621 0.6030 -2.6982 26 1 -0.3634 -1.0268 -0.0398 27 1 -0.3633 0.5480 -0.8693 28 1 -0.3633 0.4790 0.9093 29 1 1.8933 -0.5138 0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 0.6965 2.4492 1.1914 32 1 2.9489 3.6469 0.6848 33 1 3.3844 2.1577 3.3136 34 1 4.2523 1.8390 1.7920 35 1 5.1798 4.1075 1.7969 36 1 5.5305 3.3363 3.3651 37 1 7.6471 4.9816 4.2087 38 1 3.1043 5.8871 1.8613 39 1 2.3453 6.0673 3.4640 40 1 1.0044 4.6239 1.8922 41 1 1.5051 3.7690 3.3716 42 1 1.9666 4.0033 -2.4228 43 1 3.4225 3.1264 -1.7063 44 1 2.3774 -0.3235 -2.3900 45 1 3.2011 0.5099 -3.7299 46 1 3.7172 0.7984 -2.0509 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591239008.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:07 Heat of formation + Delta-G solvation = 30.930874 kcal Electronic energy + Delta-G solvation = -21561.717036 eV Core-core repulsion = 18679.906376 eV Total energy + Delta-G solvation = -2881.810660 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.41534 -37.42787 -34.93008 -33.14215 -31.40505 -29.87529 -29.18759 -28.38564 -25.88984 -24.27606 -22.50574 -22.09533 -21.28635 -20.99269 -19.05625 -18.84440 -16.69594 -16.15994 -15.43791 -14.83909 -14.64684 -14.06876 -13.72075 -13.65705 -13.42960 -13.39341 -12.98900 -12.85568 -12.46584 -12.34107 -12.15465 -11.99156 -11.52809 -11.38756 -11.21468 -10.97981 -10.88253 -10.80584 -10.69199 -10.47205 -10.16650 -10.13247 -9.99366 -9.85438 -9.73311 -9.46854 -9.37003 -8.43769 -7.98928 -6.60266 -5.73901 -3.16913 3.40235 3.47940 3.50454 3.70291 4.42699 4.53954 4.56227 4.80145 4.87032 5.19780 5.22337 5.31726 5.35683 5.39127 5.42163 5.50411 5.57907 5.67815 5.70373 5.77286 5.80671 5.86601 5.91032 6.01414 6.03836 6.06986 6.18294 6.21960 6.26465 6.29741 6.40387 6.45817 6.53759 6.70022 6.74505 6.83749 6.85944 7.05875 7.46957 7.51481 7.72614 7.77819 7.85632 8.51304 9.27160 9.90464 10.47961 11.34655 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.030353 B = 0.004396 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.261975 B = 6368.209068 C = 6502.641114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C 0.120 3.880 4 H 0.076 0.924 5 N -0.678 5.678 6 C 0.097 3.903 7 C -0.124 4.124 8 C 0.172 3.828 9 N -0.591 5.591 10 C -0.250 4.250 11 H 0.065 0.935 12 C 0.002 3.998 13 N -0.904 5.904 14 Si 0.901 3.099 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.291 1.291 18 C 0.148 3.852 19 C -0.133 4.133 20 C -0.172 4.172 21 H 0.099 0.901 22 C -0.176 4.176 23 C -0.149 4.149 24 H 0.097 0.903 25 C -0.127 4.127 26 H 0.044 0.956 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.333 0.667 32 H 0.038 0.962 33 H 0.059 0.941 34 H 0.042 0.958 35 H 0.013 0.987 36 H 0.086 0.914 37 H 0.252 0.748 38 H 0.014 0.986 39 H 0.053 0.947 40 H 0.044 0.956 41 H 0.064 0.936 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.066 0.934 45 H 0.055 0.945 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.805 -8.371 -12.010 18.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C 0.010 3.990 4 H 0.094 0.906 5 N -0.307 5.307 6 C -0.012 4.012 7 C -0.163 4.163 8 C 0.045 3.955 9 N -0.314 5.314 10 C -0.380 4.380 11 H 0.082 0.918 12 C -0.196 4.196 13 N -0.549 5.549 14 Si 0.731 3.269 15 H -0.203 1.203 16 H -0.216 1.216 17 H -0.218 1.218 18 C 0.021 3.979 19 C -0.172 4.172 20 C -0.192 4.192 21 H 0.117 0.883 22 C -0.213 4.213 23 C -0.168 4.168 24 H 0.116 0.884 25 C -0.184 4.184 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.151 0.849 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.031 0.969 36 H 0.104 0.896 37 H 0.062 0.938 38 H 0.032 0.968 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.083 0.917 42 H 0.108 0.892 43 H 0.113 0.887 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.310 -8.827 -11.551 17.823 hybrid contribution 0.058 0.908 0.108 0.916 sum -10.253 -7.919 -11.443 17.285 Atomic orbital electron populations 1.21720 0.96273 1.00792 1.01685 1.21689 0.96094 0.95754 1.01850 1.21181 0.98911 0.93105 0.85821 0.90585 1.60813 1.05644 1.32372 1.31898 1.21471 0.93173 0.89847 0.96720 1.22197 0.96173 0.98986 0.98986 1.20780 0.92716 0.86224 0.95735 1.44042 1.28021 1.38228 1.21111 1.19233 0.90644 1.36694 0.91407 0.91762 1.25058 0.96011 1.01082 0.97499 1.70042 1.00453 1.53952 1.30417 0.86237 0.78400 0.77298 0.84942 1.20251 1.21578 1.21777 1.20852 0.88357 0.92878 0.95785 1.22203 0.97837 0.97626 0.99582 1.23250 0.99254 1.03415 0.93257 0.88283 1.23153 0.99937 0.94141 1.04065 1.22238 1.01856 0.96283 0.96421 0.88437 1.21522 0.98142 0.97156 1.01538 0.93639 0.93141 0.92354 0.91522 0.91537 0.84921 0.94372 0.92265 0.93935 0.96861 0.89568 0.93768 0.96777 0.92832 0.93719 0.91684 0.89224 0.88670 0.91524 0.92602 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.42 37.16 0.35 -1.13 16 2 C -0.12 -1.29 5.71 -26.73 -0.15 -1.44 16 3 C 0.12 1.50 1.67 -67.71 -0.11 1.39 16 4 H 0.08 1.09 6.26 -51.93 -0.33 0.76 16 5 N -0.68 -9.70 5.69 -99.69 -0.57 -10.26 16 6 C 0.10 1.67 2.26 -67.67 -0.15 1.51 16 7 C -0.12 -2.48 5.58 -26.61 -0.15 -2.63 16 8 C 0.17 4.21 5.29 -3.71 -0.02 4.19 16 9 N -0.59 -15.14 2.99 -172.32 -0.52 -15.66 16 10 C -0.25 -7.00 9.58 -15.06 -0.14 -7.15 16 11 H 0.06 1.77 7.88 -52.49 -0.41 1.36 16 12 C 0.00 0.05 4.93 -17.43 -0.09 -0.03 16 13 N -0.90 -26.66 11.20 55.49 0.62 -26.04 16 14 Si 0.90 22.01 29.58 -169.99 -5.03 16.98 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 18 C 0.15 3.19 6.52 -3.71 -0.02 3.16 16 19 C -0.13 -2.36 5.35 -26.61 -0.14 -2.50 16 20 C -0.17 -1.92 3.68 -90.62 -0.33 -2.25 16 21 H 0.10 1.09 7.55 -51.93 -0.39 0.69 16 22 C -0.18 -2.03 9.46 -26.69 -0.25 -2.28 16 23 C -0.15 -1.49 6.34 -90.58 -0.57 -2.07 16 24 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 25 C -0.13 -1.19 8.72 37.16 0.32 -0.86 16 26 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.48 6.73 -51.93 -0.35 0.13 16 28 H 0.06 0.62 7.48 -51.93 -0.39 0.24 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.66 4.83 -51.93 -0.25 0.41 16 31 H 0.33 4.41 7.42 -39.30 -0.29 4.12 16 32 H 0.04 0.69 7.33 -51.93 -0.38 0.31 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.04 0.80 7.54 -51.93 -0.39 0.41 16 35 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 2.37 6.09 -51.93 -0.32 2.05 16 37 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.05 1.13 7.93 -51.93 -0.41 0.71 16 40 H 0.04 0.68 8.10 -51.93 -0.42 0.26 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.09 1.22 8.07 -51.93 -0.42 0.80 16 44 H 0.07 0.58 5.73 -51.93 -0.30 0.28 16 45 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.61 7.19 -51.92 -0.37 0.23 16 LS Contribution 343.01 15.07 5.17 5.17 Total: -1.00 -28.87 343.01 -10.15 -39.02 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -8.36 Total: 2.88 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -1.47 Total: -12.09 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: -0.46 Total: -51.96 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.87 -10.15 -39.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591239008.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.951 kcal (2) G-P(sol) polarization free energy of solvation -28.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds