Wall clock time and date at job start Mon Mar 30 2020 01:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47478 * 2 1 4 4 H 1.08999 * 109.47040 * 184.54463 * 3 2 1 5 5 N 1.46898 * 109.46998 * 64.54398 * 3 2 1 6 6 C 1.46910 * 110.99862 * 153.09077 * 5 3 2 7 7 C 1.53043 * 109.45775 * 273.72711 * 6 5 3 8 8 C 1.53197 * 109.30634 * 178.60219 * 7 6 5 9 9 N 1.46916 * 108.77087 * 54.65347 * 8 7 6 10 10 C 1.36935 * 120.63595 * 126.40170 * 9 8 7 11 11 H 1.07993 * 120.00612 * 208.88410 * 10 9 8 12 12 C 1.38820 * 119.99616 * 28.88491 * 10 9 8 13 13 N 1.31621 * 119.99649 * 16.05831 * 12 10 9 14 14 Si 1.86798 * 119.99873 * 196.05364 * 12 10 9 15 15 H 1.48498 * 109.47023 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46804 * 120.00114 * 14 12 10 17 17 H 1.48498 * 109.47165 * 239.99762 * 14 12 10 18 18 C 1.46935 * 118.73771 * 306.38694 * 9 8 7 19 19 C 1.53038 * 109.45695 * 153.67176 * 6 5 3 20 20 C 1.52999 * 109.46968 * 304.55031 * 3 2 1 21 21 H 1.08996 * 115.55192 * 78.87876 * 20 3 2 22 22 C 1.53003 * 117.49600 * 224.54821 * 20 3 2 23 23 C 1.52999 * 117.49651 * 293.20547 * 20 3 2 24 24 H 1.09005 * 117.49803 * 144.99680 * 23 20 3 25 25 C 1.52999 * 117.50147 * 0.02562 * 23 20 3 26 26 H 1.08995 * 109.47540 * 177.77976 * 1 2 3 27 27 H 1.08994 * 109.46836 * 57.77126 * 1 2 3 28 28 H 1.09004 * 109.46644 * 297.77924 * 1 2 3 29 29 H 1.09005 * 109.46524 * 119.99800 * 2 1 3 30 30 H 1.08994 * 109.46991 * 239.99447 * 2 1 3 31 31 H 1.00892 * 111.00585 * 277.04720 * 5 3 2 32 32 H 1.08992 * 109.45352 * 33.69540 * 6 5 3 33 33 H 1.08998 * 109.49590 * 298.55802 * 7 6 5 34 34 H 1.08992 * 109.50136 * 58.66412 * 7 6 5 35 35 H 1.09002 * 109.59476 * 294.86081 * 8 7 6 36 36 H 1.08997 * 109.58080 * 174.43738 * 8 7 6 37 37 H 0.97000 * 119.99622 * 180.02562 * 13 12 10 38 38 H 1.08997 * 109.58473 * 293.81617 * 18 9 8 39 39 H 1.08998 * 109.58349 * 173.39403 * 18 9 8 40 40 H 1.08999 * 109.50000 * 301.33185 * 19 6 5 41 41 H 1.08992 * 109.50300 * 61.43566 * 19 6 5 42 42 H 1.08998 * 117.50072 * 214.97625 * 22 20 3 43 43 H 1.09003 * 117.49703 * 0.02562 * 22 20 3 44 44 H 1.09004 * 109.47556 * 69.33765 * 25 23 20 45 45 H 1.08999 * 109.47557 * 189.34116 * 25 23 20 46 46 H 1.09010 * 109.46733 * 309.34268 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1271 1.4435 -0.0814 5 7 1.6421 2.1025 1.2505 6 6 2.5775 3.1810 1.5974 7 6 3.7525 2.6018 2.3888 8 6 4.7428 3.7231 2.7185 9 7 4.0232 4.8014 3.4097 10 6 4.4619 5.2694 4.6195 11 1 3.7573 5.6804 5.3272 12 6 5.8124 5.2156 4.9361 13 7 6.7034 5.0196 3.9874 14 14 6.3650 5.4215 6.7086 15 1 5.1778 5.6272 7.5765 16 1 7.0916 4.2022 7.1453 17 1 7.2650 6.5980 6.8130 18 6 2.8238 5.3684 2.7780 19 6 1.8551 4.2286 2.4474 20 6 1.4389 2.1960 -1.1881 21 1 0.4114 2.5358 -1.0580 22 6 2.3770 3.0812 -2.0111 23 6 1.8664 1.7597 -2.5908 24 1 1.1202 1.8125 -3.3837 25 6 2.8621 0.6030 -2.6982 26 1 -0.3634 -1.0268 -0.0398 27 1 -0.3633 0.5480 -0.8693 28 1 -0.3633 0.4790 0.9093 29 1 1.8933 -0.5138 0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 0.6965 2.4492 1.1914 32 1 2.9489 3.6469 0.6848 33 1 3.3844 2.1577 3.3136 34 1 4.2523 1.8390 1.7920 35 1 5.1798 4.1075 1.7969 36 1 5.5305 3.3363 3.3651 37 1 7.6471 4.9816 4.2087 38 1 3.1043 5.8871 1.8613 39 1 2.3453 6.0673 3.4640 40 1 1.0044 4.6239 1.8922 41 1 1.5051 3.7690 3.3716 42 1 1.9666 4.0033 -2.4228 43 1 3.4225 3.1264 -1.7063 44 1 2.3774 -0.3235 -2.3900 45 1 3.2011 0.5099 -3.7299 46 1 3.7172 0.7984 -2.0509 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591239008.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:07 Heat of formation + Delta-G solvation = 15.118608 kcal Electronic energy + Delta-G solvation = -21562.402707 eV Core-core repulsion = 18679.906376 eV Total energy + Delta-G solvation = -2882.496331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.48912 -38.95582 -36.29311 -34.59519 -33.03406 -31.62480 -30.64952 -29.32673 -27.21302 -25.96523 -23.90350 -23.38265 -22.92545 -21.87861 -20.68474 -19.86847 -18.69202 -17.20621 -16.89194 -16.39290 -15.79825 -15.60350 -15.31617 -15.00410 -14.90990 -14.50971 -14.49575 -13.99062 -13.74574 -13.60820 -13.28612 -13.09333 -12.94877 -12.94260 -12.61582 -12.56660 -12.33595 -12.16266 -11.99870 -11.89955 -11.77133 -11.74665 -11.38792 -11.24557 -11.17430 -10.79383 -10.57571 -10.52585 -9.19328 -8.68383 -7.87916 -5.34519 1.45517 1.47274 1.58217 2.50943 2.83777 3.20906 3.32701 3.66913 3.69443 3.91869 4.00218 4.05451 4.15122 4.31574 4.39134 4.47224 4.48313 4.51721 4.54620 4.57315 4.72782 4.86328 4.87661 4.89311 4.94118 4.95931 5.00707 5.05431 5.09579 5.13131 5.20652 5.23419 5.27161 5.33708 5.39838 5.45566 5.49229 5.52301 5.64411 5.64754 5.75797 6.25462 6.39347 6.65001 7.14547 7.85574 8.38178 9.18889 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.030353 B = 0.004396 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.261975 B = 6368.209068 C = 6502.641114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C 0.122 3.878 4 H 0.054 0.946 5 N -0.675 5.675 6 C 0.111 3.889 7 C -0.108 4.108 8 C 0.181 3.819 9 N -0.609 5.609 10 C -0.263 4.263 11 H 0.066 0.934 12 C -0.051 4.051 13 N -0.937 5.937 14 Si 0.968 3.032 15 H -0.266 1.266 16 H -0.290 1.290 17 H -0.291 1.291 18 C 0.143 3.857 19 C -0.119 4.119 20 C -0.171 4.171 21 H 0.110 0.890 22 C -0.191 4.191 23 C -0.132 4.132 24 H 0.115 0.885 25 C -0.129 4.129 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.344 0.656 32 H 0.031 0.969 33 H 0.047 0.953 34 H 0.050 0.950 35 H -0.009 1.009 36 H 0.050 0.950 37 H 0.250 0.750 38 H 0.011 0.989 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.095 0.905 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.012 -9.133 -12.711 20.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C 0.012 3.988 4 H 0.072 0.928 5 N -0.306 5.306 6 C 0.001 3.999 7 C -0.148 4.148 8 C 0.055 3.945 9 N -0.333 5.333 10 C -0.394 4.394 11 H 0.084 0.916 12 C -0.246 4.246 13 N -0.583 5.583 14 Si 0.796 3.204 15 H -0.190 1.190 16 H -0.217 1.217 17 H -0.218 1.218 18 C 0.017 3.983 19 C -0.159 4.159 20 C -0.191 4.191 21 H 0.128 0.872 22 C -0.228 4.228 23 C -0.151 4.151 24 H 0.133 0.867 25 C -0.185 4.185 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.164 0.836 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.009 0.991 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.029 0.971 39 H 0.074 0.926 40 H 0.098 0.902 41 H 0.077 0.923 42 H 0.114 0.886 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -12.559 -9.593 -12.265 20.005 hybrid contribution 0.749 1.154 0.271 1.402 sum -11.810 -8.439 -11.994 18.830 Atomic orbital electron populations 1.21680 0.95025 1.01586 1.01719 1.21659 0.97098 0.94409 1.01844 1.21154 0.97832 0.94112 0.85653 0.92756 1.60678 1.05583 1.30958 1.33377 1.21152 0.92685 0.90297 0.95762 1.21944 0.96420 0.97411 0.99052 1.20537 0.93027 0.87275 0.93698 1.44301 1.29135 1.38868 1.21009 1.19572 0.90970 1.36281 0.92540 0.91589 1.25839 0.96094 1.01360 1.01311 1.70197 1.00460 1.55309 1.32358 0.85202 0.78025 0.76851 0.80357 1.18985 1.21672 1.21755 1.21022 0.87609 0.94346 0.95315 1.22028 0.97763 0.96233 0.99833 1.23157 0.99331 1.03349 0.93267 0.87244 1.23137 0.99011 0.95372 1.05291 1.22338 1.01640 0.95225 0.95927 0.86673 1.21552 0.97603 0.97323 1.02052 0.92614 0.92226 0.93059 0.92942 0.90209 0.83600 0.95113 0.93412 0.93102 0.99143 0.93113 0.94138 0.97145 0.92574 0.90209 0.92292 0.88646 0.90694 0.90507 0.91388 0.93810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.42 71.98 0.68 -1.77 16 2 C -0.11 -2.26 5.71 30.59 0.17 -2.09 16 3 C 0.12 2.88 1.67 44.91 0.08 2.95 16 4 H 0.05 1.53 6.26 -2.39 -0.01 1.52 16 5 N -0.68 -18.14 5.69 -469.33 -2.67 -20.81 16 6 C 0.11 3.72 2.26 44.94 0.10 3.82 16 7 C -0.11 -4.42 5.58 30.67 0.17 -4.25 16 8 C 0.18 9.21 5.29 86.37 0.46 9.67 16 9 N -0.61 -31.83 2.99 -699.10 -2.09 -33.92 16 10 C -0.26 -14.97 9.58 84.04 0.81 -14.16 16 11 H 0.07 3.65 7.88 -2.91 -0.02 3.63 16 12 C -0.05 -2.92 4.93 84.86 0.42 -2.50 16 13 N -0.94 -57.05 11.20 21.65 0.24 -56.81 16 14 Si 0.97 45.90 29.58 68.60 2.03 47.93 16 15 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 16 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 17 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 18 C 0.14 6.10 6.52 86.36 0.56 6.66 16 19 C -0.12 -4.05 5.35 30.67 0.16 -3.88 16 20 C -0.17 -3.44 3.68 -10.79 -0.04 -3.48 16 21 H 0.11 2.02 7.55 -2.39 -0.02 2.01 16 22 C -0.19 -4.17 9.46 30.62 0.29 -3.88 16 23 C -0.13 -2.33 6.34 -10.77 -0.07 -2.40 16 24 H 0.12 1.68 8.14 -2.38 -0.02 1.66 16 25 C -0.13 -2.15 8.72 71.98 0.63 -1.52 16 26 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.06 0.92 6.73 -2.39 -0.02 0.90 16 28 H 0.05 0.95 7.48 -2.39 -0.02 0.94 16 29 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.08 1.40 4.83 -2.39 -0.01 1.38 16 31 H 0.34 8.13 7.42 -89.70 -0.67 7.46 16 32 H 0.03 1.10 7.33 -2.39 -0.02 1.08 16 33 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.05 1.95 7.54 -2.39 -0.02 1.94 16 35 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 36 H 0.05 2.92 6.09 -2.39 -0.01 2.91 16 37 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 38 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.06 2.33 7.93 -2.39 -0.02 2.31 16 40 H 0.08 2.18 8.10 -2.39 -0.02 2.16 16 41 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.07 1.94 8.07 -2.39 -0.02 1.92 16 44 H 0.08 1.13 5.73 -2.38 -0.01 1.11 16 45 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.04 0.87 7.19 -2.38 -0.02 0.85 16 Total: -1.00 -63.26 343.01 2.20 -61.06 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.27 Total: 19.36 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: 4.42 Total: -16.81 kcal Atomic # 7 Polarization: -107.02 SS G_CDS: -4.52 Total: -111.54 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -63.26 2.20 -61.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591239008.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.177 kcal (2) G-P(sol) polarization free energy of solvation -63.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds