Wall clock time and date at job start Mon Mar 30 2020 01:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46993 * 2 1 4 4 H 1.09003 * 109.46878 * 57.13818 * 3 2 1 5 5 N 1.46897 * 109.47353 * 297.13832 * 3 2 1 6 6 C 1.46905 * 111.00051 * 160.34965 * 5 3 2 7 7 C 1.53038 * 109.46069 * 150.40636 * 6 5 3 8 8 C 1.53186 * 109.31365 * 181.38791 * 7 6 5 9 9 N 1.46928 * 108.77416 * 305.36205 * 8 7 6 10 10 C 1.36934 * 120.63014 * 233.58412 * 9 8 7 11 11 H 1.08003 * 119.99823 * 137.14502 * 10 9 8 12 12 C 1.38810 * 120.00063 * 316.86636 * 10 9 8 13 13 N 1.31612 * 119.99929 * 335.77490 * 12 10 9 14 14 Si 1.86805 * 119.99745 * 155.77811 * 12 10 9 15 15 H 1.48504 * 109.46944 * 90.00161 * 14 12 10 16 16 H 1.48494 * 109.47212 * 209.99940 * 14 12 10 17 17 H 1.48499 * 109.46962 * 330.00097 * 14 12 10 18 18 C 1.46929 * 118.73835 * 53.86301 * 9 8 7 19 19 C 1.53038 * 109.45821 * 270.47427 * 6 5 3 20 20 C 1.53001 * 109.47271 * 177.13672 * 3 2 1 21 21 H 1.09000 * 115.54847 * 92.64610 * 20 3 2 22 22 C 1.53003 * 117.49868 * 306.98409 * 20 3 2 23 23 C 1.52999 * 59.99932 * 252.51076 * 22 20 3 24 24 H 1.09001 * 117.49270 * 252.51278 * 23 22 20 25 25 C 1.52997 * 117.50286 * 107.48868 * 23 22 20 26 26 H 1.08997 * 109.47209 * 305.19925 * 1 2 3 27 27 H 1.08998 * 109.47410 * 65.20607 * 1 2 3 28 28 H 1.09002 * 109.46861 * 185.20494 * 1 2 3 29 29 H 1.09005 * 109.46831 * 240.00315 * 2 1 3 30 30 H 1.08993 * 109.47396 * 120.00281 * 2 1 3 31 31 H 1.00902 * 111.00300 * 284.30061 * 5 3 2 32 32 H 1.09004 * 109.44594 * 30.44268 * 6 5 3 33 33 H 1.09003 * 109.49803 * 61.43482 * 7 6 5 34 34 H 1.09002 * 109.49790 * 301.33551 * 7 6 5 35 35 H 1.08999 * 109.58659 * 185.57730 * 8 7 6 36 36 H 1.08999 * 109.58950 * 65.14830 * 8 7 6 37 37 H 0.97006 * 119.99908 * 179.97438 * 13 12 10 38 38 H 1.09003 * 109.58277 * 65.92350 * 18 9 8 39 39 H 1.08995 * 109.58904 * 186.34933 * 18 9 8 40 40 H 1.08999 * 109.49834 * 298.56452 * 19 6 5 41 41 H 1.08999 * 109.49649 * 58.66563 * 19 6 5 42 42 H 1.09005 * 117.49448 * 359.97438 * 22 20 3 43 43 H 1.08996 * 117.50188 * 144.99387 * 22 20 3 44 44 H 1.08998 * 109.47129 * 317.57345 * 25 23 22 45 45 H 1.09001 * 109.46865 * 77.57825 * 25 23 22 46 46 H 1.09006 * 109.47382 * 197.57187 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6353 1.9709 0.8633 5 7 1.6076 2.1148 -1.2325 6 6 1.6567 3.5751 -1.0806 7 6 1.9348 4.2200 -2.4403 8 6 2.0198 5.7403 -2.2722 9 7 0.7911 6.2133 -1.6200 10 6 0.0417 7.2111 -2.1837 11 1 -1.0352 7.1311 -2.2055 12 6 0.6657 8.3281 -2.7221 13 7 1.8619 8.6804 -2.3012 14 14 -0.1924 9.3310 -4.0439 15 1 -1.0036 10.3991 -3.4064 16 1 0.8230 9.9464 -4.9358 17 1 -1.0788 8.4449 -4.8403 18 6 0.3851 5.5995 -0.3482 19 6 0.3155 4.0770 -0.5408 20 6 3.5683 1.4432 0.0721 21 1 4.0841 1.4724 -0.8877 22 6 4.2226 0.6452 1.2017 23 6 4.2198 2.1745 1.2475 24 1 5.1645 2.6852 1.0611 25 6 3.2931 2.8493 2.2608 26 1 -0.3633 0.5923 0.8397 27 1 -0.3634 0.4309 -0.9329 28 1 -0.3633 -1.0235 0.0932 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 2.1605 1.8145 -2.0213 32 1 2.4513 3.8409 -0.3833 33 1 1.1280 3.9749 -3.1311 34 1 2.8789 3.8444 -2.8349 35 1 2.1188 6.2111 -3.2502 36 1 2.8816 5.9920 -1.6541 37 1 2.2981 9.4608 -2.6777 38 1 1.1164 5.8400 0.4234 39 1 -0.5947 5.9775 -0.0564 40 1 -0.4760 3.8332 -1.2494 41 1 0.1071 3.5995 0.4166 42 1 3.5642 0.1201 1.8937 43 1 5.1689 0.1495 0.9851 44 1 2.3283 2.3421 2.2648 45 1 3.7380 2.7920 3.2543 46 1 3.1529 3.8945 1.9852 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591239009.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:10 Heat of formation + Delta-G solvation = 25.707744 kcal Electronic energy + Delta-G solvation = -21644.883254 eV Core-core repulsion = 18762.846102 eV Total energy + Delta-G solvation = -2882.037152 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.35560 -37.34527 -34.94832 -33.12157 -31.44530 -29.90516 -29.16184 -28.46053 -25.84532 -24.16634 -22.43108 -22.16419 -21.33184 -20.63888 -19.30103 -18.99680 -16.65763 -16.25270 -15.18129 -14.76288 -14.51039 -14.37963 -13.84170 -13.64100 -13.52364 -13.21530 -12.90754 -12.85226 -12.52836 -12.35212 -12.07597 -11.74553 -11.59438 -11.29797 -11.26651 -11.18583 -10.85949 -10.71185 -10.65999 -10.43682 -10.34346 -10.15419 -10.11997 -9.93466 -9.73381 -9.54572 -9.35158 -8.37839 -8.02847 -6.44965 -5.76109 -3.32690 3.37462 3.45396 3.50080 3.69882 4.41095 4.52122 4.59975 4.77094 4.91826 5.18679 5.21345 5.32535 5.35643 5.38848 5.49359 5.53497 5.60984 5.63472 5.76996 5.77569 5.80653 5.90472 5.99332 6.03744 6.07805 6.12237 6.13177 6.21997 6.26874 6.36538 6.41649 6.50969 6.56968 6.64995 6.68762 6.73699 6.95841 7.12850 7.22744 7.41025 7.55405 7.75027 7.89476 8.59321 9.24474 9.84825 10.54575 11.25213 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.028260 B = 0.004717 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.560260 B = 5934.736721 C = 6326.502932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.107 4.107 3 C 0.110 3.890 4 H 0.087 0.913 5 N -0.677 5.677 6 C 0.098 3.902 7 C -0.140 4.140 8 C 0.177 3.823 9 N -0.584 5.584 10 C -0.270 4.270 11 H 0.056 0.944 12 C 0.022 3.978 13 N -0.883 5.883 14 Si 0.890 3.110 15 H -0.285 1.285 16 H -0.289 1.289 17 H -0.276 1.276 18 C 0.145 3.855 19 C -0.114 4.114 20 C -0.177 4.177 21 H 0.098 0.902 22 C -0.175 4.175 23 C -0.150 4.150 24 H 0.099 0.901 25 C -0.128 4.128 26 H 0.047 0.953 27 H 0.067 0.933 28 H 0.041 0.959 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.333 0.667 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.059 0.941 36 H 0.018 0.982 37 H 0.253 0.747 38 H 0.013 0.987 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.043 0.957 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.223 -16.250 5.978 17.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.145 4.145 3 C 0.000 4.000 4 H 0.105 0.895 5 N -0.306 5.306 6 C -0.011 4.011 7 C -0.180 4.180 8 C 0.050 3.950 9 N -0.307 5.307 10 C -0.400 4.400 11 H 0.074 0.926 12 C -0.180 4.180 13 N -0.524 5.524 14 Si 0.719 3.281 15 H -0.211 1.211 16 H -0.215 1.215 17 H -0.201 1.201 18 C 0.018 3.982 19 C -0.154 4.154 20 C -0.197 4.197 21 H 0.116 0.884 22 C -0.213 4.213 23 C -0.168 4.168 24 H 0.117 0.883 25 C -0.185 4.185 26 H 0.066 0.934 27 H 0.086 0.914 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.152 0.848 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.036 0.964 37 H 0.063 0.937 38 H 0.031 0.969 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.112 0.888 43 H 0.107 0.893 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.644 -16.129 6.081 17.439 hybrid contribution 0.901 0.767 -0.788 1.422 sum 3.545 -15.362 5.292 16.631 Atomic orbital electron populations 1.21638 0.95374 1.00065 1.02825 1.21467 0.96387 0.95525 1.01139 1.21419 0.88975 0.95120 0.94499 0.89500 1.60776 1.58768 1.06754 1.04295 1.21419 0.97288 0.85185 0.97215 1.22373 0.99682 0.99929 0.96024 1.20607 0.88943 0.88338 0.97083 1.43853 1.26706 1.40439 1.19722 1.18915 0.90197 0.96219 1.34667 0.92623 1.25336 0.96888 0.95681 1.00054 1.70148 1.16136 1.25553 1.40514 0.86533 0.79061 0.80085 0.82462 1.21147 1.21536 1.20141 1.21058 0.97887 0.90207 0.89030 1.22067 0.96680 0.97522 0.99152 1.23371 0.97260 1.05059 0.93976 0.88362 1.22996 1.02152 0.93979 1.02178 1.22329 1.00934 0.93841 0.99670 0.88270 1.21442 0.98541 1.00975 0.97567 0.93380 0.91358 0.93997 0.92374 0.92439 0.84832 0.93965 0.91865 0.93874 0.92250 0.96379 0.93680 0.96937 0.92832 0.92030 0.93864 0.88821 0.89333 0.92025 0.92381 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.71 37.16 0.36 -1.21 16 2 C -0.11 -1.15 5.44 -26.73 -0.15 -1.29 16 3 C 0.11 1.33 1.94 -67.71 -0.13 1.20 16 4 H 0.09 1.15 4.58 -51.93 -0.24 0.92 16 5 N -0.68 -9.41 5.52 -99.69 -0.55 -9.96 16 6 C 0.10 1.64 2.25 -67.67 -0.15 1.49 16 7 C -0.14 -2.63 5.31 -26.62 -0.14 -2.77 16 8 C 0.18 4.18 5.51 -3.71 -0.02 4.16 16 9 N -0.58 -14.86 2.87 -172.05 -0.49 -15.36 16 10 C -0.27 -7.57 9.31 -15.06 -0.14 -7.71 16 11 H 0.06 1.56 7.94 -52.48 -0.42 1.14 16 12 C 0.02 0.63 4.71 -17.43 -0.08 0.55 16 13 N -0.88 -26.08 12.85 55.49 0.71 -25.36 16 14 Si 0.89 21.65 29.62 -169.99 -5.03 16.62 16 15 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 C 0.14 3.17 6.54 -3.48 -0.02 3.15 16 19 C -0.11 -2.09 5.64 -26.38 -0.15 -2.24 16 20 C -0.18 -2.02 4.84 -90.62 -0.44 -2.46 16 21 H 0.10 1.16 7.93 -51.93 -0.41 0.75 16 22 C -0.18 -1.74 9.38 -26.73 -0.25 -1.99 16 23 C -0.15 -1.71 6.41 -90.62 -0.58 -2.29 16 24 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 25 C -0.13 -1.47 9.61 37.16 0.36 -1.12 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.85 7.84 -51.93 -0.41 0.45 16 28 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.56 6.78 -51.93 -0.35 0.21 16 31 H 0.33 4.43 7.96 -39.29 -0.31 4.12 16 32 H 0.04 0.75 7.40 -51.93 -0.38 0.37 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.04 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.06 1.53 7.36 -51.93 -0.38 1.14 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.05 1.18 7.93 -51.93 -0.41 0.76 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.04 0.72 7.70 -51.93 -0.40 0.32 16 42 H 0.09 0.88 7.14 -51.93 -0.37 0.51 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.70 5.76 -51.93 -0.30 0.40 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 351.09 15.07 5.29 5.29 Total: -1.00 -28.76 351.09 -10.20 -38.96 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -8.59 Total: 2.33 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -1.54 Total: -12.52 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.33 Total: -50.68 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.76 -10.20 -38.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591239009.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.669 kcal (2) G-P(sol) polarization free energy of solvation -28.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds