Wall clock time and date at job start Mon Mar 30 2020 00:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42887 * 1 3 3 C 1.42908 * 114.00142 * 2 1 4 4 C 1.53005 * 109.47074 * 210.00026 * 3 2 1 5 5 C 1.52994 * 109.47066 * 299.99673 * 4 3 2 6 6 C 1.53000 * 109.47453 * 300.00254 * 5 4 3 7 7 N 1.46901 * 109.47539 * 180.02562 * 6 5 4 8 8 C 1.46895 * 111.00119 * 154.99851 * 7 6 5 9 9 C 1.52994 * 109.47270 * 179.97438 * 8 7 6 10 10 H 1.09009 * 109.47154 * 54.99975 * 9 8 7 11 11 C 1.47200 * 109.47451 * 295.00037 * 9 8 7 12 12 N 6.95626 * 126.59504 * 115.55023 * 2 1 3 13 13 C 1.52996 * 109.47347 * 174.99819 * 9 8 7 14 14 C 1.50702 * 109.47159 * 185.00014 * 13 9 8 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 9 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 9 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.53005 * 109.47193 * 59.99823 * 6 5 4 23 23 C 1.52994 * 109.47082 * 89.99720 * 3 2 1 24 24 H 1.09005 * 109.47411 * 60.00001 * 1 2 3 25 25 H 1.08995 * 109.47518 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47364 * 300.00052 * 1 2 3 27 27 H 1.08997 * 109.46619 * 329.99766 * 3 2 1 28 28 H 1.08995 * 109.46764 * 179.97438 * 4 3 2 29 29 H 1.08994 * 109.47003 * 59.99714 * 4 3 2 30 30 H 1.08999 * 109.47188 * 179.97438 * 5 4 3 31 31 H 1.09008 * 109.47254 * 60.00224 * 5 4 3 32 32 H 1.09000 * 109.46690 * 299.99977 * 6 5 4 33 33 H 1.00903 * 110.99388 * 31.04289 * 7 6 5 34 34 H 1.08998 * 109.47324 * 59.99878 * 8 7 6 35 35 H 1.09002 * 109.47421 * 300.00055 * 8 7 6 36 36 H 1.09004 * 109.47066 * 65.00217 * 13 9 8 37 37 H 1.08994 * 109.47405 * 305.00047 * 13 9 8 38 38 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 39 39 H 1.08995 * 109.46764 * 60.00264 * 22 6 5 40 40 H 1.08994 * 109.47003 * 180.02562 * 22 6 5 41 41 H 1.09000 * 109.46732 * 180.02562 * 23 3 2 42 42 H 1.08999 * 109.47375 * 299.99971 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3589 1.2633 -0.7213 5 6 4.2926 0.2893 0.0000 6 6 4.5001 0.7552 1.4425 7 7 5.3971 -0.1796 2.1349 8 6 6.0860 0.4811 3.2514 9 6 7.0085 -0.5219 3.9468 10 1 7.6876 -0.9591 3.2147 11 6 6.2002 -1.5865 4.5633 12 7 5.5759 -2.4088 5.0388 13 6 7.8183 0.1951 5.0290 14 6 8.8134 -0.7639 5.6300 15 1 8.8636 -1.7828 5.2753 16 6 9.6640 -0.3388 6.6285 17 7 9.6031 0.9020 7.0601 18 14 10.9027 -1.5254 7.3680 19 1 11.8153 -2.0154 6.3039 20 1 11.6919 -0.8281 8.4151 21 1 10.1855 -2.6761 7.9736 22 6 3.1514 0.7974 2.1638 23 6 2.2175 1.7714 1.4424 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.3449 1.9993 -0.5139 28 1 3.8020 2.2591 -0.7216 29 1 3.2111 0.9313 -1.7489 30 1 5.2533 0.2589 -0.5141 31 1 3.8493 -0.7065 0.0000 32 1 4.9434 1.7510 1.4424 33 1 6.0592 -0.5883 1.4924 34 1 5.3497 0.8518 3.9645 35 1 6.6761 1.3153 2.8718 36 1 7.1455 0.5556 5.8072 37 1 8.3481 1.0389 4.5872 38 1 10.2013 1.2009 7.7628 39 1 2.7081 -0.1983 2.1638 40 1 3.2991 1.1298 3.1913 41 1 2.6605 2.7674 1.4424 42 1 1.2567 1.8015 1.9563 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591770741.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:37 Heat of formation + Delta-G solvation = -48.183157 kcal Electronic energy + Delta-G solvation = -20176.003039 eV Core-core repulsion = 17154.928643 eV Total energy + Delta-G solvation = -3021.074396 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.64912 -37.48751 -36.15440 -34.24854 -33.23336 -31.43732 -30.91857 -28.63016 -26.71034 -25.93957 -23.27236 -22.55266 -21.69601 -21.35336 -19.68108 -16.99526 -16.51373 -16.36274 -16.05297 -15.54585 -15.25260 -14.61823 -14.40983 -14.13733 -13.66801 -13.53099 -13.11814 -12.91410 -12.50630 -12.30212 -12.23795 -12.07235 -11.94276 -11.79936 -11.45937 -11.20249 -11.17755 -11.03169 -10.79486 -10.64723 -10.56666 -10.36969 -10.31099 -10.18331 -9.61643 -9.47716 -9.20353 -8.43611 -8.19494 -6.07670 -4.10676 3.32642 3.36727 3.40750 3.59306 3.80051 3.89738 4.24106 4.43687 4.56599 4.61193 4.83918 4.96598 5.04321 5.07533 5.15822 5.20292 5.30387 5.34185 5.40428 5.41859 5.44102 5.52763 5.64809 5.70826 5.78818 5.81212 5.91354 6.05897 6.15624 6.19555 6.28226 6.45730 6.49069 6.56010 7.03911 7.25646 7.44853 7.55213 7.61457 7.87706 8.25641 8.65000 8.94003 9.54564 11.03242 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.039497 B = 0.003378 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.742798 B = 8286.661311 C = 8482.485748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.376 6.376 3 C 0.088 3.912 4 C -0.112 4.112 5 C -0.117 4.117 6 C 0.091 3.909 7 N -0.690 5.690 8 C 0.067 3.933 9 C 0.009 3.991 10 H 0.098 0.902 11 C 0.256 3.744 12 N -0.480 5.480 13 C 0.032 3.968 14 C -0.526 4.526 15 H 0.056 0.944 16 C 0.062 3.938 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.102 4.102 23 C -0.141 4.141 24 H 0.037 0.963 25 H 0.083 0.917 26 H 0.039 0.961 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.042 0.958 33 H 0.341 0.659 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.026 0.974 37 H 0.037 0.963 38 H 0.263 0.737 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.029 5.096 -17.121 22.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.295 6.295 3 C 0.031 3.969 4 C -0.150 4.150 5 C -0.155 4.155 6 C -0.018 4.018 7 N -0.321 5.321 8 C -0.063 4.063 9 C -0.013 4.013 10 H 0.116 0.884 11 C -0.061 4.061 12 N -0.157 5.157 13 C -0.007 4.007 14 C -0.564 4.564 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.140 4.140 23 C -0.179 4.179 24 H 0.056 0.944 25 H 0.102 0.898 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.159 0.841 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.044 0.956 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.267 3.549 -15.874 22.308 hybrid contribution 1.393 0.552 -0.063 1.499 sum -13.874 4.102 -15.937 21.525 Atomic orbital electron populations 1.22755 0.81687 1.02592 0.99567 1.87968 1.18980 1.27570 1.94976 1.22135 0.94675 0.84580 0.95553 1.21590 0.94027 1.00250 0.99107 1.21616 0.98989 1.00535 0.94329 1.21472 0.93694 0.94069 0.92613 1.60491 1.24081 1.34572 1.12970 1.22100 0.96077 0.95083 0.93005 1.19215 0.93391 0.90035 0.98637 0.88379 1.28873 0.92024 0.93335 0.91865 1.81005 1.11816 1.11714 1.11150 1.19156 0.94052 0.95660 0.91790 1.21123 1.18192 0.97164 1.19970 0.92539 1.24956 0.97393 0.95145 0.96492 1.69933 1.38524 1.15791 1.28867 0.86650 0.81264 0.81161 0.78978 1.20062 1.21212 1.20208 1.21400 0.94085 1.00219 0.98318 1.22031 1.00274 0.99601 0.95998 0.94429 0.89817 0.94225 0.92564 0.90800 0.91359 0.92157 0.90209 0.94054 0.84068 0.90662 0.93433 0.95608 0.94510 0.92767 0.90626 0.92186 0.91228 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 101.05 1.09 1.34 16 2 O -0.38 -4.03 9.00 -35.23 -0.32 -4.35 16 3 C 0.09 0.80 2.92 -26.73 -0.08 0.72 16 4 C -0.11 -0.96 5.66 -26.73 -0.15 -1.11 16 5 C -0.12 -1.19 5.05 -26.73 -0.13 -1.32 16 6 C 0.09 1.06 2.49 -67.71 -0.17 0.89 16 7 N -0.69 -9.37 6.01 -106.73 -0.64 -10.01 16 8 C 0.07 1.02 4.85 -3.83 -0.02 1.01 16 9 C 0.01 0.17 2.35 -93.41 -0.22 -0.05 16 10 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 11 C 0.26 5.51 13.67 -20.74 -0.28 5.22 16 12 N -0.48 -11.25 18.54 42.18 0.78 -10.47 16 13 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 14 C -0.53 -14.18 8.60 -34.44 -0.30 -14.48 16 15 H 0.06 1.51 7.59 -52.49 -0.40 1.12 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 18 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C -0.10 -1.24 5.28 -26.73 -0.14 -1.38 16 23 C -0.14 -1.35 5.63 -26.73 -0.15 -1.50 16 24 H 0.04 0.24 8.09 -51.93 -0.42 -0.18 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.04 0.29 7.87 -51.93 -0.41 -0.12 16 27 H 0.06 0.43 7.79 -51.93 -0.40 0.02 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 31 H 0.08 0.95 7.68 -51.92 -0.40 0.55 16 32 H 0.04 0.47 7.80 -51.93 -0.40 0.06 16 33 H 0.34 4.19 8.35 -39.29 -0.33 3.86 16 34 H 0.07 1.21 7.43 -51.93 -0.39 0.82 16 35 H 0.05 0.66 8.05 -51.93 -0.42 0.25 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.08 1.08 7.68 -51.93 -0.40 0.68 16 40 H 0.06 0.79 7.45 -51.93 -0.39 0.40 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.58 7.87 -51.93 -0.41 0.17 16 LS Contribution 341.98 15.07 5.15 5.15 Total: -1.00 -30.87 341.98 -7.36 -38.23 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -7.28 Total: -1.61 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -0.77 Total: -8.41 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.88 Total: -45.50 kcal Atomic # 8 Polarization: -4.03 SS G_CDS: -0.32 Total: -4.35 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.87 -7.36 -38.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591770741.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.955 kcal (2) G-P(sol) polarization free energy of solvation -30.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds