Wall clock time and date at job start Mon Mar 30 2020 00:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42887 * 1 3 3 C 1.42908 * 114.00142 * 2 1 4 4 C 1.53005 * 109.47074 * 210.00026 * 3 2 1 5 5 C 1.52994 * 109.47066 * 299.99673 * 4 3 2 6 6 C 1.53000 * 109.47453 * 300.00254 * 5 4 3 7 7 N 1.46901 * 109.47539 * 180.02562 * 6 5 4 8 8 C 1.46895 * 111.00119 * 154.99851 * 7 6 5 9 9 C 1.52994 * 109.47270 * 179.97438 * 8 7 6 10 10 H 1.09009 * 109.47154 * 54.99975 * 9 8 7 11 11 C 1.47200 * 109.47451 * 295.00037 * 9 8 7 12 12 N 6.95626 * 126.59504 * 115.55023 * 2 1 3 13 13 C 1.52996 * 109.47347 * 174.99819 * 9 8 7 14 14 C 1.50702 * 109.47159 * 185.00014 * 13 9 8 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 9 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 9 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.53005 * 109.47193 * 59.99823 * 6 5 4 23 23 C 1.52994 * 109.47082 * 89.99720 * 3 2 1 24 24 H 1.09005 * 109.47411 * 60.00001 * 1 2 3 25 25 H 1.08995 * 109.47518 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47364 * 300.00052 * 1 2 3 27 27 H 1.08997 * 109.46619 * 329.99766 * 3 2 1 28 28 H 1.08995 * 109.46764 * 179.97438 * 4 3 2 29 29 H 1.08994 * 109.47003 * 59.99714 * 4 3 2 30 30 H 1.08999 * 109.47188 * 179.97438 * 5 4 3 31 31 H 1.09008 * 109.47254 * 60.00224 * 5 4 3 32 32 H 1.09000 * 109.46690 * 299.99977 * 6 5 4 33 33 H 1.00903 * 110.99388 * 31.04289 * 7 6 5 34 34 H 1.08998 * 109.47324 * 59.99878 * 8 7 6 35 35 H 1.09002 * 109.47421 * 300.00055 * 8 7 6 36 36 H 1.09004 * 109.47066 * 65.00217 * 13 9 8 37 37 H 1.08994 * 109.47405 * 305.00047 * 13 9 8 38 38 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 39 39 H 1.08995 * 109.46764 * 60.00264 * 22 6 5 40 40 H 1.08994 * 109.47003 * 180.02562 * 22 6 5 41 41 H 1.09000 * 109.46732 * 180.02562 * 23 3 2 42 42 H 1.08999 * 109.47375 * 299.99971 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3589 1.2633 -0.7213 5 6 4.2926 0.2893 0.0000 6 6 4.5001 0.7552 1.4425 7 7 5.3971 -0.1796 2.1349 8 6 6.0860 0.4811 3.2514 9 6 7.0085 -0.5219 3.9468 10 1 7.6876 -0.9591 3.2147 11 6 6.2002 -1.5865 4.5633 12 7 5.5759 -2.4088 5.0388 13 6 7.8183 0.1951 5.0290 14 6 8.8134 -0.7639 5.6300 15 1 8.8636 -1.7828 5.2753 16 6 9.6640 -0.3388 6.6285 17 7 9.6031 0.9020 7.0601 18 14 10.9027 -1.5254 7.3680 19 1 11.8153 -2.0154 6.3039 20 1 11.6919 -0.8281 8.4151 21 1 10.1855 -2.6761 7.9736 22 6 3.1514 0.7974 2.1638 23 6 2.2175 1.7714 1.4424 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.3449 1.9993 -0.5139 28 1 3.8020 2.2591 -0.7216 29 1 3.2111 0.9313 -1.7489 30 1 5.2533 0.2589 -0.5141 31 1 3.8493 -0.7065 0.0000 32 1 4.9434 1.7510 1.4424 33 1 6.0592 -0.5883 1.4924 34 1 5.3497 0.8518 3.9645 35 1 6.6761 1.3153 2.8718 36 1 7.1455 0.5556 5.8072 37 1 8.3481 1.0389 4.5872 38 1 10.2013 1.2009 7.7628 39 1 2.7081 -0.1983 2.1638 40 1 3.2991 1.1298 3.1913 41 1 2.6605 2.7674 1.4424 42 1 1.2567 1.8015 1.9563 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591770741.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:37 Heat of formation + Delta-G solvation = -67.518451 kcal Electronic energy + Delta-G solvation = -20176.841480 eV Core-core repulsion = 17154.928643 eV Total energy + Delta-G solvation = -3021.912837 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.44924 -38.74309 -37.40747 -35.76462 -34.90389 -33.00832 -31.71275 -29.81099 -27.78971 -27.14884 -24.58157 -23.72691 -23.21868 -22.29359 -20.49930 -18.59724 -18.33777 -17.21213 -16.86619 -16.67175 -16.24576 -16.13378 -15.71976 -15.35061 -14.73446 -14.62058 -14.36451 -14.18565 -13.86725 -13.73152 -13.33347 -13.27430 -13.09141 -13.04752 -12.95100 -12.79839 -12.45684 -12.36289 -12.26832 -11.98591 -11.87948 -11.63540 -11.45264 -11.25778 -11.13632 -10.95838 -10.54818 -10.32894 -9.25617 -8.19210 -6.27544 1.41101 1.43146 1.50119 2.07354 2.14504 2.41891 2.94425 3.15803 3.22021 3.37994 3.79337 3.86511 4.10678 4.21233 4.28319 4.37680 4.42374 4.46498 4.53242 4.60790 4.64293 4.67007 4.72662 4.76824 4.85676 4.87989 4.93313 5.00396 5.13374 5.17062 5.32590 5.36412 5.41912 5.46985 5.53733 5.62436 5.79492 6.13944 6.25301 6.40386 6.61303 6.83390 6.94177 7.40914 8.91581 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.039497 B = 0.003378 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.742798 B = 8286.661311 C = 8482.485748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.402 6.402 3 C 0.085 3.915 4 C -0.110 4.110 5 C -0.111 4.111 6 C 0.093 3.907 7 N -0.701 5.701 8 C 0.081 3.919 9 C 0.020 3.980 10 H 0.121 0.879 11 C 0.266 3.734 12 N -0.517 5.517 13 C 0.039 3.961 14 C -0.541 4.541 15 H 0.054 0.946 16 C 0.011 3.989 17 N -0.924 5.924 18 Si 0.949 3.051 19 H -0.262 1.262 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.100 4.100 23 C -0.137 4.137 24 H 0.054 0.946 25 H 0.085 0.915 26 H 0.041 0.959 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.350 0.650 34 H 0.063 0.937 35 H 0.068 0.932 36 H -0.002 1.002 37 H 0.036 0.964 38 H 0.264 0.736 39 H 0.047 0.953 40 H 0.042 0.958 41 H 0.084 0.916 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.806 5.721 -18.881 24.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.322 6.322 3 C 0.028 3.972 4 C -0.148 4.148 5 C -0.149 4.149 6 C -0.016 4.016 7 N -0.334 5.334 8 C -0.049 4.049 9 C -0.002 4.002 10 H 0.138 0.862 11 C -0.050 4.050 12 N -0.195 5.195 13 C 0.000 4.000 14 C -0.579 4.579 15 H 0.072 0.928 16 C -0.188 4.188 17 N -0.564 5.564 18 Si 0.775 3.225 19 H -0.186 1.186 20 H -0.207 1.207 21 H -0.208 1.208 22 C -0.139 4.139 23 C -0.175 4.175 24 H 0.072 0.928 25 H 0.104 0.896 26 H 0.060 0.940 27 H 0.095 0.905 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.170 0.830 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.017 0.983 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.103 0.897 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.049 4.169 -17.655 23.570 hybrid contribution 1.278 0.349 0.492 1.413 sum -13.771 4.518 -17.163 22.464 Atomic orbital electron populations 1.22882 0.80591 1.03127 1.00457 1.87942 1.20390 1.28754 1.95089 1.22257 0.95409 0.84421 0.95155 1.21623 0.93338 1.00680 0.99114 1.21547 0.99978 0.99817 0.93538 1.21514 0.92716 0.94192 0.93191 1.60415 1.24408 1.35324 1.13217 1.21882 0.95411 0.94400 0.93244 1.19210 0.93684 0.89697 0.97637 0.86151 1.29431 0.91407 0.93070 0.91091 1.81002 1.13242 1.13121 1.12135 1.18977 0.93379 0.95377 0.92258 1.21542 1.18689 0.97609 1.20034 0.92770 1.25723 0.99313 0.96600 0.97153 1.70029 1.39506 1.17278 1.29545 0.85744 0.79310 0.78941 0.78554 1.18628 1.20677 1.20783 1.21352 0.95121 0.99396 0.98005 1.22017 0.99668 0.99508 0.96308 0.92754 0.89614 0.94034 0.90536 0.89004 0.90549 0.90808 0.92418 0.92857 0.83035 0.91827 0.91425 0.98323 0.94531 0.92692 0.93366 0.93881 0.89705 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.82 113.37 1.23 1.60 16 2 O -0.40 -8.22 9.00 -148.98 -1.34 -9.56 16 3 C 0.08 1.36 2.92 30.59 0.09 1.45 16 4 C -0.11 -1.59 5.66 30.59 0.17 -1.41 16 5 C -0.11 -2.05 5.05 30.59 0.15 -1.89 16 6 C 0.09 2.02 2.49 44.92 0.11 2.13 16 7 N -0.70 -18.14 6.01 -491.58 -2.95 -21.09 16 8 C 0.08 2.36 4.85 86.30 0.42 2.78 16 9 C 0.02 0.71 2.35 -12.60 -0.03 0.68 16 10 H 0.12 3.91 8.14 -2.38 -0.02 3.89 16 11 C 0.27 11.41 13.67 89.43 1.22 12.63 16 12 N -0.52 -24.42 18.54 20.01 0.37 -24.05 16 13 C 0.04 1.82 4.42 29.85 0.13 1.95 16 14 C -0.54 -28.98 8.60 25.60 0.22 -28.76 16 15 H 0.05 2.87 7.59 -2.91 -0.02 2.85 16 16 C 0.01 0.61 5.46 84.66 0.46 1.07 16 17 N -0.92 -53.45 13.29 21.45 0.28 -53.16 16 18 Si 0.95 43.77 29.54 68.60 2.03 45.79 16 19 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 22 C -0.10 -2.41 5.28 30.60 0.16 -2.25 16 23 C -0.14 -2.42 5.63 30.59 0.17 -2.25 16 24 H 0.05 0.60 8.09 -2.38 -0.02 0.58 16 25 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.04 0.58 7.87 -2.39 -0.02 0.56 16 27 H 0.08 0.93 7.79 -2.39 -0.02 0.91 16 28 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 1.16 8.12 -2.39 -0.02 1.14 16 31 H 0.06 1.33 7.68 -2.38 -0.02 1.32 16 32 H 0.05 1.06 7.80 -2.39 -0.02 1.04 16 33 H 0.35 7.92 8.35 -89.69 -0.75 7.17 16 34 H 0.06 2.01 7.43 -2.39 -0.02 2.00 16 35 H 0.07 1.73 8.05 -2.39 -0.02 1.71 16 36 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 37 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.26 14.53 8.31 -92.70 -0.77 13.76 16 39 H 0.05 1.41 7.68 -2.39 -0.02 1.39 16 40 H 0.04 1.14 7.45 -2.39 -0.02 1.13 16 41 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.06 1.09 7.87 -2.39 -0.02 1.07 16 Total: -1.00 -66.12 341.98 3.14 -62.98 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 0.24 Total: 11.35 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: 4.51 Total: -12.26 kcal Atomic # 7 Polarization: -96.00 SS G_CDS: -2.30 Total: -98.30 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: -1.34 Total: -9.56 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -66.12 3.14 -62.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591770741.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.540 kcal (2) G-P(sol) polarization free energy of solvation -66.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds