Wall clock time and date at job start Mon Mar 30 2020 00:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 110.01530 * 2 1 4 4 C 1.54263 * 110.03242 * 238.55745 * 2 1 3 5 5 C 1.54889 * 104.19597 * 264.32725 * 4 2 1 6 6 C 1.54969 * 102.77496 * 322.08172 * 5 4 2 7 7 H 1.08996 * 110.47456 * 279.23505 * 6 5 4 8 8 N 1.46900 * 110.52448 * 156.56916 * 6 5 4 9 9 C 1.46962 * 110.99701 * 189.03931 * 8 6 5 10 10 C 1.53046 * 109.36495 * 176.81276 * 9 8 6 11 11 N 1.46951 * 109.36568 * 58.40326 * 10 9 8 12 12 C 1.46905 * 111.00274 * 176.80981 * 11 10 9 13 13 C 1.50703 * 109.46811 * 58.98074 * 12 11 10 14 14 H 1.08004 * 119.99927 * 5.01334 * 13 12 11 15 15 C 1.37873 * 119.99665 * 185.00957 * 13 12 11 16 16 N 1.31516 * 120.00365 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99643 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47061 * 60.00241 * 17 15 13 19 19 H 1.48504 * 109.47066 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47153 * 299.99839 * 17 15 13 21 21 C 1.46958 * 110.88150 * 300.67861 * 11 10 9 22 22 C 1.46958 * 111.00050 * 65.24975 * 8 6 5 23 23 C 1.53875 * 110.03098 * 121.39068 * 2 1 3 24 24 H 1.09002 * 109.47094 * 298.60606 * 1 2 3 25 25 H 1.08996 * 109.47068 * 58.61012 * 1 2 3 26 26 H 1.09003 * 109.47091 * 178.60888 * 1 2 3 27 27 H 1.09005 * 109.46983 * 181.38735 * 3 2 1 28 28 H 1.08997 * 109.46946 * 301.39198 * 3 2 1 29 29 H 1.09002 * 109.47447 * 61.39156 * 3 2 1 30 30 H 1.08999 * 110.48640 * 23.00328 * 4 2 1 31 31 H 1.08997 * 110.48657 * 145.51468 * 4 2 1 32 32 H 1.08993 * 110.75818 * 80.37414 * 5 4 2 33 33 H 1.09006 * 110.75251 * 203.56123 * 5 4 2 34 34 H 1.08997 * 109.49144 * 296.78070 * 9 8 6 35 35 H 1.09004 * 109.48618 * 56.84449 * 9 8 6 36 36 H 1.09006 * 109.48934 * 298.43722 * 10 9 8 37 37 H 1.09006 * 109.50783 * 178.38319 * 10 9 8 38 38 H 1.09000 * 109.47284 * 178.98069 * 12 11 10 39 39 H 1.09001 * 109.46927 * 298.97955 * 12 11 10 40 40 H 0.96999 * 119.99693 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.49016 * 299.35385 * 21 11 10 42 42 H 1.09004 * 109.48802 * 179.28096 * 21 11 10 43 43 H 1.09000 * 109.48584 * 303.14669 * 22 8 6 44 44 H 1.08994 * 109.49572 * 63.21680 * 22 8 6 45 45 H 1.09004 * 110.03270 * 238.56696 * 23 2 1 46 46 H 1.08994 * 110.03708 * 359.95193 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0585 -0.7560 -1.2365 5 6 2.3280 -2.1905 -0.7181 6 6 2.8872 -1.9410 0.7055 7 1 3.9438 -1.6775 0.6593 8 7 2.6876 -3.1248 1.5520 9 6 3.0152 -2.8308 2.9542 10 6 2.7191 -4.0622 3.8134 11 7 3.5052 -5.2014 3.3197 12 6 3.3057 -6.3852 4.1664 13 6 1.8438 -6.7511 4.1818 14 1 1.1461 -6.2141 3.5562 15 6 1.3972 -7.7713 4.9944 16 7 2.2467 -8.4250 5.7565 17 14 -0.4148 -8.2253 5.0130 18 1 -0.8347 -8.6416 3.6509 19 1 -0.6348 -9.3451 5.9633 20 1 -1.2153 -7.0497 5.4403 21 6 3.1776 -5.4954 1.9176 22 6 3.4738 -4.2640 1.0583 23 6 2.0571 -0.7530 1.2341 24 1 -0.3633 0.4920 0.9022 25 1 -0.3633 0.5353 -0.8772 26 1 -0.3633 -1.0274 -0.0249 27 1 3.1434 1.4273 -0.0249 28 1 1.6751 1.9621 -0.8772 29 1 1.7158 1.9474 0.9022 30 1 1.3062 -0.7705 -2.0251 31 1 2.9799 -0.2994 -1.5979 32 1 1.4032 -2.7654 -0.6739 33 1 3.0652 -2.6948 -1.3430 34 1 4.0720 -2.5765 3.0351 35 1 2.4115 -1.9919 3.3005 36 1 1.6571 -4.3003 3.7541 37 1 2.9883 -3.8564 4.8495 38 1 3.8846 -7.2185 3.7681 39 1 3.6361 -6.1656 5.1816 40 1 1.9322 -9.1425 6.3285 41 1 2.1208 -5.7497 1.8367 42 1 3.7815 -6.3342 1.5713 43 1 3.2043 -4.4701 0.0225 44 1 4.5358 -4.0260 1.1177 45 1 2.6868 -0.0945 1.8325 46 1 1.2230 -1.1177 1.8334 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591845653.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:46 Heat of formation + Delta-G solvation = -11.164544 kcal Electronic energy + Delta-G solvation = -21449.450420 eV Core-core repulsion = 18565.814366 eV Total energy + Delta-G solvation = -2883.636054 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.70982 -37.87598 -34.86669 -32.46802 -31.20671 -30.36651 -28.64623 -27.42448 -26.95841 -24.95137 -23.79667 -22.52949 -21.65330 -20.04358 -19.07098 -18.64152 -16.50490 -16.01422 -15.44253 -14.75889 -14.37154 -14.15196 -14.12485 -14.00086 -13.73763 -13.55385 -13.12292 -13.03898 -12.67648 -12.21147 -11.87971 -11.85809 -11.60597 -11.45826 -11.21039 -11.02438 -10.87879 -10.73613 -10.63080 -10.56654 -10.50662 -10.50296 -10.30892 -10.17305 -9.94305 -9.78384 -9.45910 -8.39571 -7.97129 -7.11651 -5.98960 -4.07851 3.31657 3.36111 3.39265 4.15123 4.42872 4.44030 4.58953 4.75468 5.11081 5.17591 5.18722 5.31178 5.32523 5.40001 5.45784 5.50098 5.54725 5.65328 5.68070 5.71368 5.78159 5.84111 5.88019 5.93941 5.98002 6.00668 6.04230 6.04862 6.15129 6.21834 6.25306 6.35232 6.39081 6.41635 6.68647 6.83281 6.93963 7.27244 7.48112 7.49395 7.56098 7.93971 8.10854 8.33964 8.34484 9.02888 9.58841 11.06016 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.027756 B = 0.004343 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.553274 B = 6445.318077 C = 6809.493932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.068 4.068 3 C -0.138 4.138 4 C -0.114 4.114 5 C -0.114 4.114 6 C 0.080 3.920 7 H 0.040 0.960 8 N -0.529 5.529 9 C 0.058 3.942 10 C 0.066 3.934 11 N -0.544 5.544 12 C 0.187 3.813 13 C -0.547 4.547 14 H 0.058 0.942 15 C 0.065 3.935 16 N -0.893 5.893 17 Si 0.889 3.111 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.064 3.936 22 C 0.060 3.940 23 C -0.109 4.109 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.031 0.969 35 H 0.069 0.931 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.026 0.974 39 H 0.033 0.967 40 H 0.262 0.738 41 H 0.046 0.954 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.031 0.969 45 H 0.059 0.941 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.037 16.770 -12.229 20.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.068 4.068 3 C -0.196 4.196 4 C -0.152 4.152 5 C -0.152 4.152 6 C -0.028 4.028 7 H 0.057 0.943 8 N -0.254 5.254 9 C -0.070 4.070 10 C -0.063 4.063 11 N -0.268 5.268 12 C 0.062 3.938 13 C -0.586 4.586 14 H 0.076 0.924 15 C -0.138 4.138 16 N -0.532 5.532 17 Si 0.717 3.283 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.065 4.065 22 C -0.068 4.068 23 C -0.147 4.147 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.044 0.956 39 H 0.052 0.948 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.049 0.951 45 H 0.078 0.922 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.067 16.613 -12.073 20.536 hybrid contribution -1.003 -0.411 0.156 1.095 sum -0.936 16.202 -11.917 20.135 Atomic orbital electron populations 1.21897 0.94334 1.02019 1.01185 1.21124 0.95611 0.94866 0.95234 1.21922 1.00671 0.95583 1.01402 1.22446 1.00512 0.95439 0.96780 1.22521 1.01467 0.96410 0.94780 1.22458 0.96939 0.90338 0.93110 0.94257 1.62271 1.56208 1.04698 1.02195 1.22238 0.98356 0.98383 0.88034 1.21908 0.97699 0.89844 0.96871 1.62681 1.54105 1.07910 1.02148 1.19726 0.95115 0.86512 0.92497 1.21740 0.94749 1.17583 1.24560 0.92359 1.24960 0.97472 0.96112 0.95238 1.69939 1.34269 1.22764 1.26197 0.86706 0.85725 0.78028 0.77860 1.20269 1.21265 1.20264 1.21926 1.00206 0.94869 0.89499 1.22200 0.94907 0.91424 0.98278 1.22355 0.99958 0.95515 0.96882 0.92835 0.93101 0.92208 0.92778 0.92940 0.92804 0.91704 0.91858 0.90415 0.92080 0.95114 0.91229 0.93305 0.91533 0.95571 0.94845 0.92816 0.93547 0.91586 0.91339 0.95053 0.92204 0.90352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.14 37.16 0.30 -0.99 16 2 C -0.07 -0.66 0.94 -153.39 -0.14 -0.80 16 3 C -0.14 -1.16 8.16 37.16 0.30 -0.86 16 4 C -0.11 -1.08 5.91 -25.07 -0.15 -1.23 16 5 C -0.11 -1.29 5.48 -24.70 -0.14 -1.43 16 6 C 0.08 1.03 2.58 -66.01 -0.17 0.86 16 7 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 8 N -0.53 -8.32 4.54 -224.45 -1.02 -9.34 16 9 C 0.06 0.95 5.33 -3.77 -0.02 0.93 16 10 C 0.07 1.33 5.24 -3.77 -0.02 1.31 16 11 N -0.54 -12.01 4.92 -235.90 -1.16 -13.17 16 12 C 0.19 4.91 5.14 -4.97 -0.03 4.88 16 13 C -0.55 -15.24 7.66 -34.44 -0.26 -15.50 16 14 H 0.06 1.63 5.82 -52.48 -0.31 1.32 16 15 C 0.06 1.83 5.46 -17.82 -0.10 1.74 16 16 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 17 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C 0.06 1.28 5.32 -3.76 -0.02 1.26 16 22 C 0.06 0.98 5.46 -3.76 -0.02 0.96 16 23 C -0.11 -1.25 4.50 -25.61 -0.12 -1.37 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.45 8.12 -51.93 -0.42 0.03 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.57 7.84 -51.93 -0.41 0.17 16 31 H 0.06 0.57 7.84 -51.93 -0.41 0.16 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.66 7.89 -51.93 -0.41 0.25 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 1.03 6.58 -51.93 -0.34 0.69 16 36 H 0.05 1.10 6.62 -51.93 -0.34 0.75 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.03 0.73 8.12 -51.93 -0.42 0.31 16 39 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.05 1.03 6.78 -51.93 -0.35 0.68 16 42 H 0.07 1.30 8.12 -51.93 -0.42 0.88 16 43 H 0.07 1.00 7.05 -51.93 -0.37 0.64 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.66 7.67 -51.93 -0.40 0.26 16 46 H 0.08 1.00 6.96 -51.93 -0.36 0.64 16 LS Contribution 342.19 15.07 5.16 5.16 Total: -1.00 -28.82 342.19 -10.62 -39.44 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -8.74 Total: -2.76 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -0.57 Total: -10.23 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -1.44 Total: -48.31 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.82 -10.62 -39.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591845653.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.280 kcal (2) G-P(sol) polarization free energy of solvation -28.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds