Wall clock time and date at job start Mon Mar 30 2020 00:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 110.01530 * 2 1 4 4 C 1.54263 * 110.03242 * 238.55745 * 2 1 3 5 5 C 1.54889 * 104.19597 * 264.32725 * 4 2 1 6 6 C 1.54969 * 102.77496 * 322.08172 * 5 4 2 7 7 H 1.08996 * 110.47456 * 279.23505 * 6 5 4 8 8 N 1.46900 * 110.52448 * 156.56916 * 6 5 4 9 9 C 1.46962 * 110.99701 * 189.03931 * 8 6 5 10 10 C 1.53046 * 109.36495 * 176.81276 * 9 8 6 11 11 N 1.46951 * 109.36568 * 58.40326 * 10 9 8 12 12 C 1.46905 * 111.00274 * 176.80981 * 11 10 9 13 13 C 1.50703 * 109.46811 * 58.98074 * 12 11 10 14 14 H 1.08004 * 119.99927 * 5.01334 * 13 12 11 15 15 C 1.37873 * 119.99665 * 185.00957 * 13 12 11 16 16 N 1.31516 * 120.00365 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99643 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47061 * 60.00241 * 17 15 13 19 19 H 1.48504 * 109.47066 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47153 * 299.99839 * 17 15 13 21 21 C 1.46958 * 110.88150 * 300.67861 * 11 10 9 22 22 C 1.46958 * 111.00050 * 65.24975 * 8 6 5 23 23 C 1.53875 * 110.03098 * 121.39068 * 2 1 3 24 24 H 1.09002 * 109.47094 * 298.60606 * 1 2 3 25 25 H 1.08996 * 109.47068 * 58.61012 * 1 2 3 26 26 H 1.09003 * 109.47091 * 178.60888 * 1 2 3 27 27 H 1.09005 * 109.46983 * 181.38735 * 3 2 1 28 28 H 1.08997 * 109.46946 * 301.39198 * 3 2 1 29 29 H 1.09002 * 109.47447 * 61.39156 * 3 2 1 30 30 H 1.08999 * 110.48640 * 23.00328 * 4 2 1 31 31 H 1.08997 * 110.48657 * 145.51468 * 4 2 1 32 32 H 1.08993 * 110.75818 * 80.37414 * 5 4 2 33 33 H 1.09006 * 110.75251 * 203.56123 * 5 4 2 34 34 H 1.08997 * 109.49144 * 296.78070 * 9 8 6 35 35 H 1.09004 * 109.48618 * 56.84449 * 9 8 6 36 36 H 1.09006 * 109.48934 * 298.43722 * 10 9 8 37 37 H 1.09006 * 109.50783 * 178.38319 * 10 9 8 38 38 H 1.09000 * 109.47284 * 178.98069 * 12 11 10 39 39 H 1.09001 * 109.46927 * 298.97955 * 12 11 10 40 40 H 0.96999 * 119.99693 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.49016 * 299.35385 * 21 11 10 42 42 H 1.09004 * 109.48802 * 179.28096 * 21 11 10 43 43 H 1.09000 * 109.48584 * 303.14669 * 22 8 6 44 44 H 1.08994 * 109.49572 * 63.21680 * 22 8 6 45 45 H 1.09004 * 110.03270 * 238.56696 * 23 2 1 46 46 H 1.08994 * 110.03708 * 359.95193 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0585 -0.7560 -1.2365 5 6 2.3280 -2.1905 -0.7181 6 6 2.8872 -1.9410 0.7055 7 1 3.9438 -1.6775 0.6593 8 7 2.6876 -3.1248 1.5520 9 6 3.0152 -2.8308 2.9542 10 6 2.7191 -4.0622 3.8134 11 7 3.5052 -5.2014 3.3197 12 6 3.3057 -6.3852 4.1664 13 6 1.8438 -6.7511 4.1818 14 1 1.1461 -6.2141 3.5562 15 6 1.3972 -7.7713 4.9944 16 7 2.2467 -8.4250 5.7565 17 14 -0.4148 -8.2253 5.0130 18 1 -0.8347 -8.6416 3.6509 19 1 -0.6348 -9.3451 5.9633 20 1 -1.2153 -7.0497 5.4403 21 6 3.1776 -5.4954 1.9176 22 6 3.4738 -4.2640 1.0583 23 6 2.0571 -0.7530 1.2341 24 1 -0.3633 0.4920 0.9022 25 1 -0.3633 0.5353 -0.8772 26 1 -0.3633 -1.0274 -0.0249 27 1 3.1434 1.4273 -0.0249 28 1 1.6751 1.9621 -0.8772 29 1 1.7158 1.9474 0.9022 30 1 1.3062 -0.7705 -2.0251 31 1 2.9799 -0.2994 -1.5979 32 1 1.4032 -2.7654 -0.6739 33 1 3.0652 -2.6948 -1.3430 34 1 4.0720 -2.5765 3.0351 35 1 2.4115 -1.9919 3.3005 36 1 1.6571 -4.3003 3.7541 37 1 2.9883 -3.8564 4.8495 38 1 3.8846 -7.2185 3.7681 39 1 3.6361 -6.1656 5.1816 40 1 1.9322 -9.1425 6.3285 41 1 2.1208 -5.7497 1.8367 42 1 3.7815 -6.3342 1.5713 43 1 3.2043 -4.4701 0.0225 44 1 4.5358 -4.0260 1.1177 45 1 2.6868 -0.0945 1.8325 46 1 1.2230 -1.1177 1.8334 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591845653.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:46 Heat of formation + Delta-G solvation = -29.000017 kcal Electronic energy + Delta-G solvation = -21450.223825 eV Core-core repulsion = 18565.814366 eV Total energy + Delta-G solvation = -2884.409458 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.81456 -39.21249 -36.38396 -34.45662 -32.32948 -31.81448 -29.91789 -28.56045 -28.09626 -26.59493 -25.01510 -23.93084 -23.41104 -21.15883 -20.63020 -19.45940 -18.49198 -17.43538 -16.70155 -16.30363 -15.85337 -15.62859 -15.53193 -15.22987 -14.92323 -14.69324 -14.50796 -13.93209 -13.88295 -13.65450 -13.50183 -12.95124 -12.91210 -12.83012 -12.63879 -12.50120 -12.34096 -12.13946 -12.07666 -12.01818 -11.82675 -11.56219 -11.40185 -11.38089 -11.34332 -11.25202 -11.15095 -10.61339 -9.25398 -9.01367 -8.16190 -6.35840 1.36080 1.37655 1.46057 2.36811 2.95133 3.08305 3.38001 3.57227 3.76124 3.94341 4.09609 4.24017 4.26043 4.38720 4.46983 4.48844 4.54453 4.56814 4.59176 4.65067 4.71192 4.78904 4.87518 4.88332 4.96758 5.01237 5.05731 5.11659 5.13114 5.17744 5.18833 5.20853 5.24384 5.25810 5.31560 5.38669 5.46586 5.51324 5.63432 5.72618 6.02988 6.14304 6.18766 6.36860 6.51785 6.84565 7.35500 8.86217 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.027756 B = 0.004343 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.553274 B = 6445.318077 C = 6809.493932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.066 4.066 3 C -0.136 4.136 4 C -0.108 4.108 5 C -0.112 4.112 6 C 0.079 3.921 7 H 0.043 0.957 8 N -0.540 5.540 9 C 0.071 3.929 10 C 0.068 3.932 11 N -0.543 5.543 12 C 0.200 3.800 13 C -0.555 4.555 14 H 0.054 0.946 15 C 0.013 3.987 16 N -0.927 5.927 17 Si 0.957 3.043 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.271 1.271 21 C 0.065 3.935 22 C 0.072 3.928 23 C -0.107 4.107 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.045 0.955 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.034 0.966 35 H 0.089 0.911 36 H 0.023 0.977 37 H 0.060 0.940 38 H 0.003 0.997 39 H 0.006 0.994 40 H 0.266 0.734 41 H 0.021 0.979 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.036 0.964 45 H 0.065 0.935 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.686 18.598 -13.860 23.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.067 4.067 3 C -0.193 4.193 4 C -0.146 4.146 5 C -0.150 4.150 6 C -0.029 4.029 7 H 0.061 0.939 8 N -0.265 5.265 9 C -0.057 4.057 10 C -0.061 4.061 11 N -0.267 5.267 12 C 0.074 3.926 13 C -0.594 4.594 14 H 0.072 0.928 15 C -0.187 4.187 16 N -0.567 5.567 17 Si 0.782 3.218 18 H -0.196 1.196 19 H -0.205 1.205 20 H -0.196 1.196 21 C -0.063 4.063 22 C -0.056 4.056 23 C -0.145 4.145 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.053 0.947 35 H 0.107 0.893 36 H 0.041 0.959 37 H 0.078 0.922 38 H 0.021 0.979 39 H 0.024 0.976 40 H 0.074 0.926 41 H 0.040 0.960 42 H 0.082 0.918 43 H 0.108 0.892 44 H 0.054 0.946 45 H 0.084 0.916 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.654 18.464 -13.722 23.014 hybrid contribution -0.747 -0.972 0.663 1.394 sum -1.401 17.492 -13.060 21.874 Atomic orbital electron populations 1.21883 0.94271 1.01329 1.01838 1.21119 0.95650 0.95543 0.94338 1.21891 1.00811 0.94560 1.02020 1.22430 1.01335 0.93977 0.96827 1.22500 1.00846 0.97669 0.93975 1.22562 0.97474 0.89409 0.93426 0.93924 1.62264 1.56231 1.05878 1.02141 1.22073 0.98897 0.96625 0.88115 1.21915 0.95752 0.90764 0.97673 1.62623 1.54554 1.06799 1.02772 1.19389 0.94107 0.87461 0.91685 1.21918 0.95343 1.17663 1.24488 0.92761 1.25807 1.02134 0.95970 0.94766 1.70058 1.36410 1.23306 1.26883 0.85624 0.80049 0.77949 0.78171 1.19557 1.20479 1.19581 1.21955 0.98534 0.97077 0.88773 1.22059 0.95225 0.89979 0.98340 1.22345 0.99268 0.95224 0.97670 0.92868 0.91773 0.93591 0.92524 0.91854 0.92701 0.90767 0.90755 0.91822 0.91382 0.94732 0.89292 0.95851 0.92183 0.97905 0.97557 0.92555 0.96017 0.91840 0.89170 0.94627 0.91601 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.14 71.98 0.59 -1.70 16 2 C -0.07 -1.11 0.94 -51.46 -0.05 -1.15 16 3 C -0.14 -1.86 8.16 71.98 0.59 -1.28 16 4 C -0.11 -1.73 5.91 31.67 0.19 -1.54 16 5 C -0.11 -2.28 5.48 31.91 0.17 -2.10 16 6 C 0.08 1.86 2.58 46.02 0.12 1.97 16 7 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 8 N -0.54 -16.30 4.54 -864.04 -3.92 -20.23 16 9 C 0.07 2.27 5.33 86.31 0.46 2.73 16 10 C 0.07 2.79 5.24 86.31 0.45 3.24 16 11 N -0.54 -24.60 4.92 -900.25 -4.43 -29.03 16 12 C 0.20 10.96 5.14 85.56 0.44 11.40 16 13 C -0.56 -31.76 7.66 25.60 0.20 -31.57 16 14 H 0.05 3.10 5.82 -2.91 -0.02 3.09 16 15 C 0.01 0.72 5.46 84.65 0.46 1.19 16 16 N -0.93 -56.20 13.29 21.45 0.28 -55.92 16 17 Si 0.96 44.91 29.54 68.60 2.03 46.93 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 21 C 0.07 2.65 5.32 86.31 0.46 3.11 16 22 C 0.07 2.27 5.46 86.31 0.47 2.74 16 23 C -0.11 -2.23 4.50 31.32 0.14 -2.09 16 24 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 0.76 8.12 -2.38 -0.02 0.74 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 1.08 7.84 -2.39 -0.02 1.06 16 31 H 0.07 1.06 7.84 -2.39 -0.02 1.04 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.07 1.29 7.89 -2.38 -0.02 1.27 16 34 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.09 2.51 6.58 -2.38 -0.02 2.50 16 36 H 0.02 1.07 6.62 -2.38 -0.02 1.06 16 37 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 38 H 0.00 0.17 8.12 -2.39 -0.02 0.15 16 39 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 41 H 0.02 0.98 6.78 -2.39 -0.02 0.96 16 42 H 0.06 2.55 8.12 -2.38 -0.02 2.54 16 43 H 0.09 2.47 7.05 -2.39 -0.02 2.45 16 44 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.07 1.29 7.67 -2.38 -0.02 1.27 16 46 H 0.06 1.51 6.96 -2.39 -0.02 1.50 16 Total: -1.00 -62.60 342.19 -0.45 -63.05 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 0.91 Total: 10.24 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: 4.69 Total: -15.05 kcal Atomic # 7 Polarization: -97.11 SS G_CDS: -8.07 Total: -105.17 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -62.60 -0.45 -63.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591845653.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.050 kcal (2) G-P(sol) polarization free energy of solvation -62.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds