Wall clock time and date at job start Mon Mar 30 2020 00:55:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86802 * 119.99461 * 2 1
4 4 H 1.48501 * 109.47270 * 270.00344 * 3 2 1
5 5 H 1.48502 * 109.47204 * 30.00627 * 3 2 1
6 6 H 1.48507 * 109.46960 * 150.00281 * 3 2 1
7 7 C 1.37877 * 120.00469 * 180.02562 * 2 1 3
8 8 H 1.07995 * 120.00134 * 179.97438 * 7 2 1
9 9 C 1.50697 * 120.00068 * 359.97438 * 7 2 1
10 10 C 1.53001 * 109.47327 * 180.02562 * 9 7 2
11 11 C 1.53122 * 109.52081 * 175.00106 * 10 9 7
12 12 C 1.53040 * 109.27414 * 177.62057 * 11 10 9
13 13 N 1.46841 * 109.52425 * 300.81820 * 12 11 10
14 14 C 1.46899 * 110.99999 * 185.83847 * 13 12 11
15 15 C 1.52996 * 109.47295 * 170.00176 * 14 13 12
16 16 C 1.53123 * 109.52445 * 175.00159 * 15 14 13
17 17 C 1.53039 * 109.31189 * 177.58234 * 16 15 14
18 18 N 1.46856 * 109.51787 * 300.79882 * 17 16 15
19 19 C 1.46846 * 111.19871 * 61.74404 * 18 17 16
20 20 C 1.53030 * 109.52435 * 298.25760 * 19 18 17
21 21 C 1.46853 * 111.19864 * 61.74441 * 13 12 11
22 22 C 1.53031 * 109.52053 * 298.26042 * 21 13 12
23 23 H 0.96991 * 120.00388 * 359.97438 * 1 2 3
24 24 H 1.08997 * 109.47344 * 59.99839 * 9 7 2
25 25 H 1.09006 * 109.47090 * 300.00594 * 9 7 2
26 26 H 1.09000 * 109.52280 * 54.87509 * 10 9 7
27 27 H 1.08994 * 109.50403 * 57.68012 * 11 10 9
28 28 H 1.09002 * 109.50499 * 297.56049 * 11 10 9
29 29 H 1.08998 * 109.45690 * 180.80160 * 12 11 10
30 30 H 1.08999 * 109.45476 * 60.83529 * 12 11 10
31 31 H 1.09003 * 109.47230 * 50.00022 * 14 13 12
32 32 H 1.09004 * 109.47101 * 290.00329 * 14 13 12
33 33 H 1.08997 * 109.57360 * 54.84292 * 15 14 13
34 34 H 1.09002 * 109.50371 * 57.61784 * 16 15 14
35 35 H 1.09003 * 109.50070 * 297.53944 * 16 15 14
36 36 H 1.09000 * 109.46148 * 60.81334 * 17 16 15
37 37 H 1.09002 * 109.46208 * 180.79044 * 17 16 15
38 38 H 1.00903 * 110.99558 * 185.83726 * 18 17 16
39 39 H 1.09004 * 109.46012 * 58.27074 * 19 18 17
40 40 H 1.08994 * 109.46057 * 178.23653 * 19 18 17
41 41 H 1.08997 * 109.50569 * 179.12357 * 20 19 18
42 42 H 1.09007 * 109.50504 * 299.19535 * 20 19 18
43 43 H 1.08999 * 109.45965 * 58.27075 * 21 13 12
44 44 H 1.08996 * 109.46519 * 178.24102 * 21 13 12
45 45 H 1.09004 * 109.50064 * 299.23136 * 22 21 13
46 46 H 1.09008 * 109.50192 * 179.12090 * 22 21 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 2.4964 2.0466 -1.4001
5 1 1.4464 2.6527 0.7002
6 1 3.5467 1.4403 0.7000
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1939 -0.0010
9 6 1.2513 -2.4991 -0.0005
10 6 2.2456 -3.6620 -0.0005
11 6 1.4854 -4.9852 0.1252
12 6 2.4799 -6.1469 0.0649
13 7 3.2115 -6.1011 -1.2074
14 6 4.0758 -7.2789 -1.3604
15 6 4.6259 -7.3261 -2.7873
16 6 5.6237 -8.4807 -2.9132
17 6 6.1253 -8.5610 -4.3568
18 7 4.9874 -8.7740 -5.2604
19 6 4.0389 -7.6550 -5.1927
20 6 3.4752 -7.5476 -3.7741
21 6 3.9868 -4.8599 -1.3298
22 6 3.0374 -3.6599 -1.3110
23 1 -0.4850 0.8399 0.0004
24 1 0.6243 -2.5568 -0.8902
25 1 0.6249 -2.5571 0.8897
26 1 2.9316 -3.5547 0.8397
27 1 0.7718 -5.0742 -0.6938
28 1 0.9536 -5.0104 1.0764
29 1 1.9403 -7.0910 0.1399
30 1 3.1847 -6.0647 0.8924
31 1 3.4977 -8.1819 -1.1639
32 1 4.9035 -7.2165 -0.6538
33 1 5.1264 -6.3854 -3.0169
34 1 5.1330 -9.4165 -2.6458
35 1 6.4667 -8.3077 -2.2442
36 1 6.6280 -7.6300 -4.6190
37 1 6.8252 -9.3911 -4.4525
38 1 5.3011 -8.9252 -6.2075
39 1 4.5514 -6.7283 -5.4510
40 1 3.2237 -7.8270 -5.8954
41 1 2.7830 -6.7073 -3.7202
42 1 2.9499 -8.4685 -3.5204
43 1 4.6846 -4.7840 -0.4958
44 1 4.5418 -4.8694 -2.2678
45 1 2.3482 -3.7280 -2.1528
46 1 3.6144 -2.7381 -1.3862
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000592397285.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:55:23
Heat of formation + Delta-G solvation = -28.385993 kcal
Electronic energy + Delta-G solvation = -21037.949169 eV
Core-core repulsion = 18153.566337 eV
Total energy + Delta-G solvation = -2884.382832 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 266.205 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-39.41725 -38.05317 -34.83839 -32.87185 -31.60669 -30.86359 -30.30749 -28.10868
-25.73332 -23.62823 -23.03873 -22.74476 -21.50884 -20.49942 -19.53440 -18.85277
-16.76924 -16.22636 -15.64910 -14.87827 -14.76735 -14.58797 -14.45313 -14.02018
-13.69137 -13.40983 -13.19326 -13.11011 -12.52645 -12.46187 -12.10241 -11.98066
-11.69874 -11.59364 -11.28265 -11.10999 -10.78303 -10.74234 -10.61141 -10.53980
-10.35020 -10.30055 -10.17638 -9.88096 -9.48119 -8.99805 -8.84049 -8.65650
-8.30325 -8.00408 -5.95195 -3.96534 3.33481 3.39904 3.42820 4.04137
4.09937 4.49105 4.68326 4.75182 4.83364 5.11396 5.27461 5.31784
5.33538 5.35945 5.40214 5.45796 5.53652 5.58925 5.67592 5.69313
5.73004 5.83095 5.87745 5.91623 5.94796 6.03928 6.08348 6.19277
6.27081 6.30970 6.44522 6.50047 6.63185 6.72307 6.85549 7.02650
7.14841 7.16233 7.23835 7.42071 7.45736 7.73584 7.90697 8.06042
8.49268 9.10170 9.66760 11.16177
Molecular weight = 266.21amu
Principal moments of inertia in cm(-1)
A = 0.028846 B = 0.003743 C = 0.003563
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 970.451208 B = 7478.514605 C = 7856.324898
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.896 5.896
2 C 0.056 3.944
3 Si 0.888 3.112
4 H -0.281 1.281
5 H -0.287 1.287
6 H -0.275 1.275
7 C -0.514 4.514
8 H 0.054 0.946
9 C 0.028 3.972
10 C -0.081 4.081
11 C -0.111 4.111
12 C 0.060 3.940
13 N -0.533 5.533
14 C 0.062 3.938
15 C -0.085 4.085
16 C -0.113 4.113
17 C 0.059 3.941
18 N -0.692 5.692
19 C 0.055 3.945
20 C -0.102 4.102
21 C 0.054 3.946
22 C -0.099 4.099
23 H 0.259 0.741
24 H 0.016 0.984
25 H 0.013 0.987
26 H 0.050 0.950
27 H 0.065 0.935
28 H 0.059 0.941
29 H 0.064 0.936
30 H 0.026 0.974
31 H 0.070 0.930
32 H 0.027 0.973
33 H 0.068 0.932
34 H 0.069 0.931
35 H 0.062 0.938
36 H 0.028 0.972
37 H 0.071 0.929
38 H 0.338 0.662
39 H 0.028 0.972
40 H 0.072 0.928
41 H 0.081 0.919
42 H 0.064 0.936
43 H 0.024 0.976
44 H 0.066 0.934
45 H 0.062 0.938
46 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.216 -17.486 -7.087 21.455
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.536 5.536
2 C -0.145 4.145
3 Si 0.716 3.284
4 H -0.207 1.207
5 H -0.213 1.213
6 H -0.200 1.200
7 C -0.552 4.552
8 H 0.072 0.928
9 C -0.009 4.009
10 C -0.100 4.100
11 C -0.149 4.149
12 C -0.068 4.068
13 N -0.258 5.258
14 C -0.067 4.067
15 C -0.104 4.104
16 C -0.151 4.151
17 C -0.070 4.070
18 N -0.323 5.323
19 C -0.074 4.074
20 C -0.139 4.139
21 C -0.073 4.073
22 C -0.137 4.137
23 H 0.069 0.931
24 H 0.035 0.965
25 H 0.032 0.968
26 H 0.068 0.932
27 H 0.084 0.916
28 H 0.077 0.923
29 H 0.082 0.918
30 H 0.044 0.956
31 H 0.089 0.911
32 H 0.045 0.955
33 H 0.087 0.913
34 H 0.088 0.912
35 H 0.081 0.919
36 H 0.046 0.954
37 H 0.089 0.911
38 H 0.156 0.844
39 H 0.046 0.954
40 H 0.090 0.910
41 H 0.099 0.901
42 H 0.083 0.917
43 H 0.043 0.957
44 H 0.084 0.916
45 H 0.081 0.919
46 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges 9.367 -17.747 -6.994 21.251
hybrid contribution 1.577 1.705 0.200 2.331
sum 10.944 -16.042 -6.794 20.574
Atomic orbital electron populations
1.69962 1.06011 1.26427 1.51193 1.25017 0.94793 0.99101 0.95583
0.86662 0.79869 0.83828 0.78040 1.20735 1.21312 1.19979 1.21260
0.92902 0.91070 1.49974 0.92761 1.19113 0.93626 0.91055 0.97083
1.21229 0.97856 0.94789 0.96117 1.21684 0.97538 0.94282 1.01407
1.22086 0.96245 0.99301 0.89132 1.61918 1.27888 1.01687 1.34298
1.22097 0.95099 0.93953 0.95509 1.21236 0.96059 0.98128 0.94984
1.21621 0.98686 0.99312 0.95479 1.21886 0.92132 0.99534 0.93448
1.60314 1.16696 1.43571 1.11697 1.21997 0.95475 0.91348 0.98595
1.21523 0.97450 1.02699 0.92273 1.22239 0.95329 0.90158 0.99601
1.21534 0.97818 0.95490 0.98816 0.93113 0.96525 0.96815 0.93174
0.91623 0.92259 0.91753 0.95618 0.91148 0.95488 0.91343 0.91188
0.91939 0.95408 0.91102 0.84434 0.95383 0.90956 0.90081 0.91683
0.95739 0.91591 0.91929 0.91106
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16
2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16
3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16
4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16
5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16
7 C -0.51 -14.44 8.45 -34.44 -0.29 -14.73 16
8 H 0.05 1.48 7.08 -52.49 -0.37 1.11 16
9 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16
10 C -0.08 -1.68 2.20 -90.50 -0.20 -1.88 16
11 C -0.11 -1.96 5.38 -26.65 -0.14 -2.10 16
12 C 0.06 0.90 5.46 -3.84 -0.02 0.87 16
13 N -0.53 -7.70 4.18 -234.68 -0.98 -8.68 16
14 C 0.06 0.74 4.36 -3.83 -0.02 0.72 16
15 C -0.09 -0.93 2.18 -90.45 -0.20 -1.13 16
16 C -0.11 -1.06 5.38 -26.65 -0.14 -1.20 16
17 C 0.06 0.52 6.55 -3.83 -0.03 0.49 16
18 N -0.69 -6.35 6.85 -113.81 -0.78 -7.13 16
19 C 0.05 0.55 6.55 -3.84 -0.03 0.52 16
20 C -0.10 -1.14 5.24 -26.61 -0.14 -1.28 16
21 C 0.05 0.84 5.30 -3.83 -0.02 0.82 16
22 C -0.10 -1.87 5.15 -26.66 -0.14 -2.01 16
23 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16
24 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16
25 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16
26 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16
27 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16
28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16
29 H 0.06 0.86 8.02 -51.93 -0.42 0.44 16
30 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16
31 H 0.07 0.81 7.99 -51.93 -0.41 0.40 16
32 H 0.03 0.32 8.12 -51.93 -0.42 -0.10 16
33 H 0.07 0.82 6.22 -51.93 -0.32 0.49 16
34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
36 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16
37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
38 H 0.34 2.51 8.90 -39.29 -0.35 2.16 16
39 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16
40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
41 H 0.08 1.04 7.84 -51.93 -0.41 0.63 16
42 H 0.06 0.76 8.14 -51.92 -0.42 0.33 16
43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16
44 H 0.07 0.95 6.12 -51.93 -0.32 0.63 16
45 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16
46 H 0.07 1.43 7.06 -51.92 -0.37 1.06 16
LS Contribution 345.06 15.07 5.20 5.20
Total: -1.00 -29.54 345.06 -11.29 -40.83
By element:
Atomic # 1 Polarization: 7.08 SS G_CDS: -8.87 Total: -1.78 kcal
Atomic # 6 Polarization: -17.20 SS G_CDS: -1.58 Total: -18.78 kcal
Atomic # 7 Polarization: -41.20 SS G_CDS: -1.02 Total: -42.22 kcal
Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal
Total LS contribution 5.20 Total: 5.20 kcal
Total: -29.54 -11.29 -40.83 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000592397285.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.449 kcal
(2) G-P(sol) polarization free energy of solvation -29.544 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.096 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.290 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.835 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.386 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds