Wall clock time and date at job start Mon Mar 30 2020 00:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99461 * 2 1 4 4 H 1.48501 * 109.47270 * 270.00344 * 3 2 1 5 5 H 1.48502 * 109.47204 * 30.00627 * 3 2 1 6 6 H 1.48507 * 109.46960 * 150.00281 * 3 2 1 7 7 C 1.37877 * 120.00469 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00134 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00068 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47327 * 180.02562 * 9 7 2 11 11 C 1.53122 * 109.52081 * 175.00106 * 10 9 7 12 12 C 1.53040 * 109.27414 * 177.62057 * 11 10 9 13 13 N 1.46841 * 109.52425 * 300.81820 * 12 11 10 14 14 C 1.46899 * 110.99999 * 185.83847 * 13 12 11 15 15 C 1.52996 * 109.47295 * 170.00176 * 14 13 12 16 16 C 1.53123 * 109.52445 * 175.00159 * 15 14 13 17 17 C 1.53039 * 109.31189 * 177.58234 * 16 15 14 18 18 N 1.46856 * 109.51787 * 300.79882 * 17 16 15 19 19 C 1.46846 * 111.19871 * 61.74404 * 18 17 16 20 20 C 1.53030 * 109.52435 * 298.25760 * 19 18 17 21 21 C 1.46853 * 111.19864 * 61.74441 * 13 12 11 22 22 C 1.53031 * 109.52053 * 298.26042 * 21 13 12 23 23 H 0.96991 * 120.00388 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47344 * 59.99839 * 9 7 2 25 25 H 1.09006 * 109.47090 * 300.00594 * 9 7 2 26 26 H 1.09000 * 109.52280 * 54.87509 * 10 9 7 27 27 H 1.08994 * 109.50403 * 57.68012 * 11 10 9 28 28 H 1.09002 * 109.50499 * 297.56049 * 11 10 9 29 29 H 1.08998 * 109.45690 * 180.80160 * 12 11 10 30 30 H 1.08999 * 109.45476 * 60.83529 * 12 11 10 31 31 H 1.09003 * 109.47230 * 50.00022 * 14 13 12 32 32 H 1.09004 * 109.47101 * 290.00329 * 14 13 12 33 33 H 1.08997 * 109.57360 * 54.84292 * 15 14 13 34 34 H 1.09002 * 109.50371 * 57.61784 * 16 15 14 35 35 H 1.09003 * 109.50070 * 297.53944 * 16 15 14 36 36 H 1.09000 * 109.46148 * 60.81334 * 17 16 15 37 37 H 1.09002 * 109.46208 * 180.79044 * 17 16 15 38 38 H 1.00903 * 110.99558 * 185.83726 * 18 17 16 39 39 H 1.09004 * 109.46012 * 58.27074 * 19 18 17 40 40 H 1.08994 * 109.46057 * 178.23653 * 19 18 17 41 41 H 1.08997 * 109.50569 * 179.12357 * 20 19 18 42 42 H 1.09007 * 109.50504 * 299.19535 * 20 19 18 43 43 H 1.08999 * 109.45965 * 58.27075 * 21 13 12 44 44 H 1.08996 * 109.46519 * 178.24102 * 21 13 12 45 45 H 1.09004 * 109.50064 * 299.23136 * 22 21 13 46 46 H 1.09008 * 109.50192 * 179.12090 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4464 2.6527 0.7002 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2513 -2.4991 -0.0005 10 6 2.2456 -3.6620 -0.0005 11 6 1.4854 -4.9852 0.1252 12 6 2.4799 -6.1469 0.0649 13 7 3.2115 -6.1011 -1.2074 14 6 4.0758 -7.2789 -1.3604 15 6 4.6259 -7.3261 -2.7873 16 6 5.6237 -8.4807 -2.9132 17 6 6.1253 -8.5610 -4.3568 18 7 4.9874 -8.7740 -5.2604 19 6 4.0389 -7.6550 -5.1927 20 6 3.4752 -7.5476 -3.7741 21 6 3.9868 -4.8599 -1.3298 22 6 3.0374 -3.6599 -1.3110 23 1 -0.4850 0.8399 0.0004 24 1 0.6243 -2.5568 -0.8902 25 1 0.6249 -2.5571 0.8897 26 1 2.9316 -3.5547 0.8397 27 1 0.7718 -5.0742 -0.6938 28 1 0.9536 -5.0104 1.0764 29 1 1.9403 -7.0910 0.1399 30 1 3.1847 -6.0647 0.8924 31 1 3.4977 -8.1819 -1.1639 32 1 4.9035 -7.2165 -0.6538 33 1 5.1264 -6.3854 -3.0169 34 1 5.1330 -9.4165 -2.6458 35 1 6.4667 -8.3077 -2.2442 36 1 6.6280 -7.6300 -4.6190 37 1 6.8252 -9.3911 -4.4525 38 1 5.3011 -8.9252 -6.2075 39 1 4.5514 -6.7283 -5.4510 40 1 3.2237 -7.8270 -5.8954 41 1 2.7830 -6.7073 -3.7202 42 1 2.9499 -8.4685 -3.5204 43 1 4.6846 -4.7840 -0.4958 44 1 4.5418 -4.8694 -2.2678 45 1 2.3482 -3.7280 -2.1528 46 1 3.6144 -2.7381 -1.3862 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592397285.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:23 Heat of formation + Delta-G solvation = -28.385993 kcal Electronic energy + Delta-G solvation = -21037.949169 eV Core-core repulsion = 18153.566337 eV Total energy + Delta-G solvation = -2884.382832 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.41725 -38.05317 -34.83839 -32.87185 -31.60669 -30.86359 -30.30749 -28.10868 -25.73332 -23.62823 -23.03873 -22.74476 -21.50884 -20.49942 -19.53440 -18.85277 -16.76924 -16.22636 -15.64910 -14.87827 -14.76735 -14.58797 -14.45313 -14.02018 -13.69137 -13.40983 -13.19326 -13.11011 -12.52645 -12.46187 -12.10241 -11.98066 -11.69874 -11.59364 -11.28265 -11.10999 -10.78303 -10.74234 -10.61141 -10.53980 -10.35020 -10.30055 -10.17638 -9.88096 -9.48119 -8.99805 -8.84049 -8.65650 -8.30325 -8.00408 -5.95195 -3.96534 3.33481 3.39904 3.42820 4.04137 4.09937 4.49105 4.68326 4.75182 4.83364 5.11396 5.27461 5.31784 5.33538 5.35945 5.40214 5.45796 5.53652 5.58925 5.67592 5.69313 5.73004 5.83095 5.87745 5.91623 5.94796 6.03928 6.08348 6.19277 6.27081 6.30970 6.44522 6.50047 6.63185 6.72307 6.85549 7.02650 7.14841 7.16233 7.23835 7.42071 7.45736 7.73584 7.90697 8.06042 8.49268 9.10170 9.66760 11.16177 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.028846 B = 0.003743 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.451208 B = 7478.514605 C = 7856.324898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.028 3.972 10 C -0.081 4.081 11 C -0.111 4.111 12 C 0.060 3.940 13 N -0.533 5.533 14 C 0.062 3.938 15 C -0.085 4.085 16 C -0.113 4.113 17 C 0.059 3.941 18 N -0.692 5.692 19 C 0.055 3.945 20 C -0.102 4.102 21 C 0.054 3.946 22 C -0.099 4.099 23 H 0.259 0.741 24 H 0.016 0.984 25 H 0.013 0.987 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.026 0.974 31 H 0.070 0.930 32 H 0.027 0.973 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.028 0.972 37 H 0.071 0.929 38 H 0.338 0.662 39 H 0.028 0.972 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.024 0.976 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.216 -17.486 -7.087 21.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.100 4.100 11 C -0.149 4.149 12 C -0.068 4.068 13 N -0.258 5.258 14 C -0.067 4.067 15 C -0.104 4.104 16 C -0.151 4.151 17 C -0.070 4.070 18 N -0.323 5.323 19 C -0.074 4.074 20 C -0.139 4.139 21 C -0.073 4.073 22 C -0.137 4.137 23 H 0.069 0.931 24 H 0.035 0.965 25 H 0.032 0.968 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.046 0.954 37 H 0.089 0.911 38 H 0.156 0.844 39 H 0.046 0.954 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.043 0.957 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.367 -17.747 -6.994 21.251 hybrid contribution 1.577 1.705 0.200 2.331 sum 10.944 -16.042 -6.794 20.574 Atomic orbital electron populations 1.69962 1.06011 1.26427 1.51193 1.25017 0.94793 0.99101 0.95583 0.86662 0.79869 0.83828 0.78040 1.20735 1.21312 1.19979 1.21260 0.92902 0.91070 1.49974 0.92761 1.19113 0.93626 0.91055 0.97083 1.21229 0.97856 0.94789 0.96117 1.21684 0.97538 0.94282 1.01407 1.22086 0.96245 0.99301 0.89132 1.61918 1.27888 1.01687 1.34298 1.22097 0.95099 0.93953 0.95509 1.21236 0.96059 0.98128 0.94984 1.21621 0.98686 0.99312 0.95479 1.21886 0.92132 0.99534 0.93448 1.60314 1.16696 1.43571 1.11697 1.21997 0.95475 0.91348 0.98595 1.21523 0.97450 1.02699 0.92273 1.22239 0.95329 0.90158 0.99601 1.21534 0.97818 0.95490 0.98816 0.93113 0.96525 0.96815 0.93174 0.91623 0.92259 0.91753 0.95618 0.91148 0.95488 0.91343 0.91188 0.91939 0.95408 0.91102 0.84434 0.95383 0.90956 0.90081 0.91683 0.95739 0.91591 0.91929 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -14.44 8.45 -34.44 -0.29 -14.73 16 8 H 0.05 1.48 7.08 -52.49 -0.37 1.11 16 9 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 10 C -0.08 -1.68 2.20 -90.50 -0.20 -1.88 16 11 C -0.11 -1.96 5.38 -26.65 -0.14 -2.10 16 12 C 0.06 0.90 5.46 -3.84 -0.02 0.87 16 13 N -0.53 -7.70 4.18 -234.68 -0.98 -8.68 16 14 C 0.06 0.74 4.36 -3.83 -0.02 0.72 16 15 C -0.09 -0.93 2.18 -90.45 -0.20 -1.13 16 16 C -0.11 -1.06 5.38 -26.65 -0.14 -1.20 16 17 C 0.06 0.52 6.55 -3.83 -0.03 0.49 16 18 N -0.69 -6.35 6.85 -113.81 -0.78 -7.13 16 19 C 0.05 0.55 6.55 -3.84 -0.03 0.52 16 20 C -0.10 -1.14 5.24 -26.61 -0.14 -1.28 16 21 C 0.05 0.84 5.30 -3.83 -0.02 0.82 16 22 C -0.10 -1.87 5.15 -26.66 -0.14 -2.01 16 23 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.86 8.02 -51.93 -0.42 0.44 16 30 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.81 7.99 -51.93 -0.41 0.40 16 32 H 0.03 0.32 8.12 -51.93 -0.42 -0.10 16 33 H 0.07 0.82 6.22 -51.93 -0.32 0.49 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.34 2.51 8.90 -39.29 -0.35 2.16 16 39 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 1.04 7.84 -51.93 -0.41 0.63 16 42 H 0.06 0.76 8.14 -51.92 -0.42 0.33 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.95 6.12 -51.93 -0.32 0.63 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.07 1.43 7.06 -51.92 -0.37 1.06 16 LS Contribution 345.06 15.07 5.20 5.20 Total: -1.00 -29.54 345.06 -11.29 -40.83 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -8.87 Total: -1.78 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: -1.58 Total: -18.78 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: -1.02 Total: -42.22 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.54 -11.29 -40.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592397285.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.449 kcal (2) G-P(sol) polarization free energy of solvation -29.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds