Wall clock time and date at job start Mon Mar 30 2020 00:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99461 * 2 1 4 4 H 1.48501 * 109.47270 * 270.00344 * 3 2 1 5 5 H 1.48502 * 109.47204 * 30.00627 * 3 2 1 6 6 H 1.48507 * 109.46960 * 150.00281 * 3 2 1 7 7 C 1.37877 * 120.00469 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00134 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00068 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47327 * 180.02562 * 9 7 2 11 11 C 1.53122 * 109.52081 * 175.00106 * 10 9 7 12 12 C 1.53040 * 109.27414 * 177.62057 * 11 10 9 13 13 N 1.46841 * 109.52425 * 300.81820 * 12 11 10 14 14 C 1.46899 * 110.99999 * 185.83847 * 13 12 11 15 15 C 1.52996 * 109.47295 * 170.00176 * 14 13 12 16 16 C 1.53123 * 109.52445 * 175.00159 * 15 14 13 17 17 C 1.53039 * 109.31189 * 177.58234 * 16 15 14 18 18 N 1.46856 * 109.51787 * 300.79882 * 17 16 15 19 19 C 1.46846 * 111.19871 * 61.74404 * 18 17 16 20 20 C 1.53030 * 109.52435 * 298.25760 * 19 18 17 21 21 C 1.46853 * 111.19864 * 61.74441 * 13 12 11 22 22 C 1.53031 * 109.52053 * 298.26042 * 21 13 12 23 23 H 0.96991 * 120.00388 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47344 * 59.99839 * 9 7 2 25 25 H 1.09006 * 109.47090 * 300.00594 * 9 7 2 26 26 H 1.09000 * 109.52280 * 54.87509 * 10 9 7 27 27 H 1.08994 * 109.50403 * 57.68012 * 11 10 9 28 28 H 1.09002 * 109.50499 * 297.56049 * 11 10 9 29 29 H 1.08998 * 109.45690 * 180.80160 * 12 11 10 30 30 H 1.08999 * 109.45476 * 60.83529 * 12 11 10 31 31 H 1.09003 * 109.47230 * 50.00022 * 14 13 12 32 32 H 1.09004 * 109.47101 * 290.00329 * 14 13 12 33 33 H 1.08997 * 109.57360 * 54.84292 * 15 14 13 34 34 H 1.09002 * 109.50371 * 57.61784 * 16 15 14 35 35 H 1.09003 * 109.50070 * 297.53944 * 16 15 14 36 36 H 1.09000 * 109.46148 * 60.81334 * 17 16 15 37 37 H 1.09002 * 109.46208 * 180.79044 * 17 16 15 38 38 H 1.00903 * 110.99558 * 185.83726 * 18 17 16 39 39 H 1.09004 * 109.46012 * 58.27074 * 19 18 17 40 40 H 1.08994 * 109.46057 * 178.23653 * 19 18 17 41 41 H 1.08997 * 109.50569 * 179.12357 * 20 19 18 42 42 H 1.09007 * 109.50504 * 299.19535 * 20 19 18 43 43 H 1.08999 * 109.45965 * 58.27075 * 21 13 12 44 44 H 1.08996 * 109.46519 * 178.24102 * 21 13 12 45 45 H 1.09004 * 109.50064 * 299.23136 * 22 21 13 46 46 H 1.09008 * 109.50192 * 179.12090 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4464 2.6527 0.7002 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2513 -2.4991 -0.0005 10 6 2.2456 -3.6620 -0.0005 11 6 1.4854 -4.9852 0.1252 12 6 2.4799 -6.1469 0.0649 13 7 3.2115 -6.1011 -1.2074 14 6 4.0758 -7.2789 -1.3604 15 6 4.6259 -7.3261 -2.7873 16 6 5.6237 -8.4807 -2.9132 17 6 6.1253 -8.5610 -4.3568 18 7 4.9874 -8.7740 -5.2604 19 6 4.0389 -7.6550 -5.1927 20 6 3.4752 -7.5476 -3.7741 21 6 3.9868 -4.8599 -1.3298 22 6 3.0374 -3.6599 -1.3110 23 1 -0.4850 0.8399 0.0004 24 1 0.6243 -2.5568 -0.8902 25 1 0.6249 -2.5571 0.8897 26 1 2.9316 -3.5547 0.8397 27 1 0.7718 -5.0742 -0.6938 28 1 0.9536 -5.0104 1.0764 29 1 1.9403 -7.0910 0.1399 30 1 3.1847 -6.0647 0.8924 31 1 3.4977 -8.1819 -1.1639 32 1 4.9035 -7.2165 -0.6538 33 1 5.1264 -6.3854 -3.0169 34 1 5.1330 -9.4165 -2.6458 35 1 6.4667 -8.3077 -2.2442 36 1 6.6280 -7.6300 -4.6190 37 1 6.8252 -9.3911 -4.4525 38 1 5.3011 -8.9252 -6.2075 39 1 4.5514 -6.7283 -5.4510 40 1 3.2237 -7.8270 -5.8954 41 1 2.7830 -6.7073 -3.7202 42 1 2.9499 -8.4685 -3.5204 43 1 4.6846 -4.7840 -0.4958 44 1 4.5418 -4.8694 -2.2678 45 1 2.3482 -3.7280 -2.1528 46 1 3.6144 -2.7381 -1.3862 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592397285.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:23 Heat of formation + Delta-G solvation = -46.809087 kcal Electronic energy + Delta-G solvation = -21038.748054 eV Core-core repulsion = 18153.566337 eV Total energy + Delta-G solvation = -2885.181717 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.49535 -39.13358 -36.30800 -34.59037 -32.98507 -31.72586 -31.58216 -29.79388 -27.09261 -25.23818 -24.14596 -23.79898 -22.77299 -21.81809 -20.48285 -20.33036 -18.42648 -17.50788 -16.91747 -16.45603 -15.97470 -15.64891 -15.47727 -15.15086 -14.88541 -14.70009 -14.65154 -14.37612 -13.90509 -13.63502 -13.38208 -13.24601 -13.05460 -12.91869 -12.78962 -12.55721 -12.37060 -12.13603 -12.06142 -11.98953 -11.77040 -11.50051 -11.27055 -11.17171 -11.10714 -10.80192 -10.67098 -10.51589 -9.36954 -9.15297 -8.17410 -6.27179 1.38902 1.40108 1.50885 2.41394 2.98302 3.15580 3.35851 3.79334 3.93843 3.98706 4.08155 4.10408 4.14113 4.36120 4.38100 4.49482 4.50572 4.54759 4.61254 4.64433 4.71573 4.76697 4.83664 4.87116 4.90359 4.98305 5.00496 5.02344 5.11445 5.12875 5.18262 5.29402 5.38789 5.40591 5.44414 5.45830 5.56324 5.58544 5.81393 5.89698 6.12164 6.21632 6.27349 6.32429 6.54335 6.89009 7.41161 8.94575 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.028846 B = 0.003743 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.451208 B = 7478.514605 C = 7856.324898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.961 3.039 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.034 3.966 10 C -0.075 4.075 11 C -0.106 4.106 12 C 0.067 3.933 13 N -0.541 5.541 14 C 0.065 3.935 15 C -0.081 4.081 16 C -0.108 4.108 17 C 0.058 3.942 18 N -0.696 5.696 19 C 0.057 3.943 20 C -0.098 4.098 21 C 0.067 3.933 22 C -0.093 4.093 23 H 0.262 0.738 24 H -0.013 1.013 25 H -0.015 1.015 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.030 0.970 31 H 0.080 0.920 32 H 0.034 0.966 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.026 0.974 37 H 0.086 0.914 38 H 0.349 0.651 39 H 0.023 0.977 40 H 0.077 0.923 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.027 0.973 44 H 0.081 0.919 45 H 0.048 0.952 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.295 -18.654 -7.385 23.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.568 4.568 8 H 0.078 0.922 9 C -0.003 4.003 10 C -0.093 4.093 11 C -0.144 4.144 12 C -0.060 4.060 13 N -0.266 5.266 14 C -0.062 4.062 15 C -0.100 4.100 16 C -0.147 4.147 17 C -0.071 4.071 18 N -0.328 5.328 19 C -0.072 4.072 20 C -0.136 4.136 21 C -0.061 4.061 22 C -0.131 4.131 23 H 0.071 0.929 24 H 0.006 0.994 25 H 0.003 0.997 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.049 0.951 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.044 0.956 37 H 0.105 0.895 38 H 0.168 0.832 39 H 0.041 0.959 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.045 0.955 44 H 0.099 0.901 45 H 0.067 0.933 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.463 -18.937 -7.301 23.309 hybrid contribution 0.874 2.047 0.282 2.244 sum 12.337 -16.890 -7.018 22.062 Atomic orbital electron populations 1.70104 1.07796 1.27561 1.52177 1.25962 0.95701 1.03224 0.95072 0.85515 0.78715 0.78793 0.78445 1.19831 1.20888 1.18766 1.21649 0.93343 0.92164 1.49626 0.92242 1.19001 0.93992 0.93067 0.94212 1.21084 0.96884 0.94391 0.96976 1.21590 0.97854 0.93891 1.01078 1.22002 0.95782 0.98712 0.89545 1.61882 1.28530 1.02100 1.34087 1.22142 0.94963 0.92875 0.96268 1.21195 0.96166 0.98464 0.94179 1.21592 0.98505 0.98345 0.96231 1.21932 0.92136 1.00132 0.92888 1.60304 1.16908 1.42959 1.12655 1.21927 0.95858 0.91546 0.97854 1.21443 0.97267 1.01565 0.93323 1.22045 0.94342 0.89198 1.00524 1.21401 0.97804 0.96758 0.97102 0.92935 0.99428 0.99665 0.93596 0.92685 0.92132 0.89470 0.95127 0.90197 0.94820 0.92261 0.91249 0.90882 0.95602 0.89520 0.83217 0.95865 0.90502 0.92072 0.92068 0.95472 0.90123 0.93337 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.11 13.29 21.45 0.28 -57.83 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 3 Si 0.96 44.95 29.54 68.60 2.03 46.97 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.53 -30.47 8.45 25.60 0.22 -30.26 16 8 H 0.06 3.28 7.08 -2.91 -0.02 3.26 16 9 C 0.03 1.86 4.45 29.85 0.13 1.99 16 10 C -0.07 -3.15 2.20 -10.71 -0.02 -3.17 16 11 C -0.11 -3.75 5.38 30.65 0.16 -3.58 16 12 C 0.07 1.88 5.46 86.33 0.47 2.35 16 13 N -0.54 -14.73 4.18 -896.38 -3.75 -18.48 16 14 C 0.06 1.39 4.36 86.30 0.38 1.77 16 15 C -0.08 -1.60 2.18 -10.69 -0.02 -1.63 16 16 C -0.11 -1.74 5.38 30.65 0.16 -1.58 16 17 C 0.06 0.87 6.55 86.32 0.57 1.44 16 18 N -0.70 -11.30 6.85 -513.99 -3.52 -14.81 16 19 C 0.06 1.06 6.55 86.32 0.57 1.63 16 20 C -0.10 -2.07 5.24 30.67 0.16 -1.91 16 21 C 0.07 1.99 5.30 86.32 0.46 2.45 16 22 C -0.09 -3.55 5.15 30.64 0.16 -3.39 16 23 H 0.26 15.29 8.31 -92.72 -0.77 14.52 16 24 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 25 H -0.02 -0.88 8.14 -2.38 -0.02 -0.90 16 26 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.09 2.09 8.02 -2.39 -0.02 2.07 16 30 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 1.60 7.99 -2.39 -0.02 1.58 16 32 H 0.03 0.70 8.12 -2.38 -0.02 0.68 16 33 H 0.06 1.30 6.22 -2.39 -0.01 1.28 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.35 4.42 8.90 -89.69 -0.80 3.62 16 39 H 0.02 0.45 8.14 -2.38 -0.02 0.43 16 40 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.06 1.53 7.84 -2.39 -0.02 1.51 16 42 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 43 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.08 2.19 6.12 -2.39 -0.01 2.18 16 45 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.05 2.23 7.06 -2.38 -0.02 2.21 16 Total: -1.00 -64.26 345.06 -0.99 -65.25 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.12 Total: 12.47 kcal Atomic # 6 Polarization: -37.42 SS G_CDS: 3.85 Total: -33.58 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -6.98 Total: -91.12 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -64.26 -0.99 -65.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592397285.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.444 kcal (2) G-P(sol) polarization free energy of solvation -64.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds