Wall clock time and date at job start Mon Mar 30 2020 00:55:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86802 * 119.99461 * 2 1
4 4 H 1.48501 * 109.47270 * 270.00344 * 3 2 1
5 5 H 1.48502 * 109.47204 * 30.00627 * 3 2 1
6 6 H 1.48507 * 109.46960 * 150.00281 * 3 2 1
7 7 C 1.37877 * 120.00469 * 180.02562 * 2 1 3
8 8 H 1.07995 * 120.00134 * 179.97438 * 7 2 1
9 9 C 1.50697 * 120.00068 * 359.97438 * 7 2 1
10 10 C 1.53001 * 109.47327 * 180.02562 * 9 7 2
11 11 C 1.53122 * 109.52081 * 175.00106 * 10 9 7
12 12 C 1.53040 * 109.27414 * 177.62057 * 11 10 9
13 13 N 1.46841 * 109.52425 * 300.81820 * 12 11 10
14 14 C 1.46899 * 110.99999 * 185.83847 * 13 12 11
15 15 C 1.52996 * 109.47295 * 170.00176 * 14 13 12
16 16 C 1.53123 * 109.52445 * 175.00159 * 15 14 13
17 17 C 1.53039 * 109.31189 * 177.58234 * 16 15 14
18 18 N 1.46856 * 109.51787 * 300.79882 * 17 16 15
19 19 C 1.46846 * 111.19871 * 61.74404 * 18 17 16
20 20 C 1.53030 * 109.52435 * 298.25760 * 19 18 17
21 21 C 1.46853 * 111.19864 * 61.74441 * 13 12 11
22 22 C 1.53031 * 109.52053 * 298.26042 * 21 13 12
23 23 H 0.96991 * 120.00388 * 359.97438 * 1 2 3
24 24 H 1.08997 * 109.47344 * 59.99839 * 9 7 2
25 25 H 1.09006 * 109.47090 * 300.00594 * 9 7 2
26 26 H 1.09000 * 109.52280 * 54.87509 * 10 9 7
27 27 H 1.08994 * 109.50403 * 57.68012 * 11 10 9
28 28 H 1.09002 * 109.50499 * 297.56049 * 11 10 9
29 29 H 1.08998 * 109.45690 * 180.80160 * 12 11 10
30 30 H 1.08999 * 109.45476 * 60.83529 * 12 11 10
31 31 H 1.09003 * 109.47230 * 50.00022 * 14 13 12
32 32 H 1.09004 * 109.47101 * 290.00329 * 14 13 12
33 33 H 1.08997 * 109.57360 * 54.84292 * 15 14 13
34 34 H 1.09002 * 109.50371 * 57.61784 * 16 15 14
35 35 H 1.09003 * 109.50070 * 297.53944 * 16 15 14
36 36 H 1.09000 * 109.46148 * 60.81334 * 17 16 15
37 37 H 1.09002 * 109.46208 * 180.79044 * 17 16 15
38 38 H 1.00903 * 110.99558 * 185.83726 * 18 17 16
39 39 H 1.09004 * 109.46012 * 58.27074 * 19 18 17
40 40 H 1.08994 * 109.46057 * 178.23653 * 19 18 17
41 41 H 1.08997 * 109.50569 * 179.12357 * 20 19 18
42 42 H 1.09007 * 109.50504 * 299.19535 * 20 19 18
43 43 H 1.08999 * 109.45965 * 58.27075 * 21 13 12
44 44 H 1.08996 * 109.46519 * 178.24102 * 21 13 12
45 45 H 1.09004 * 109.50064 * 299.23136 * 22 21 13
46 46 H 1.09008 * 109.50192 * 179.12090 * 22 21 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 2.4964 2.0466 -1.4001
5 1 1.4464 2.6527 0.7002
6 1 3.5467 1.4403 0.7000
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1939 -0.0010
9 6 1.2513 -2.4991 -0.0005
10 6 2.2456 -3.6620 -0.0005
11 6 1.4854 -4.9852 0.1252
12 6 2.4799 -6.1469 0.0649
13 7 3.2115 -6.1011 -1.2074
14 6 4.0758 -7.2789 -1.3604
15 6 4.6259 -7.3261 -2.7873
16 6 5.6237 -8.4807 -2.9132
17 6 6.1253 -8.5610 -4.3568
18 7 4.9874 -8.7740 -5.2604
19 6 4.0389 -7.6550 -5.1927
20 6 3.4752 -7.5476 -3.7741
21 6 3.9868 -4.8599 -1.3298
22 6 3.0374 -3.6599 -1.3110
23 1 -0.4850 0.8399 0.0004
24 1 0.6243 -2.5568 -0.8902
25 1 0.6249 -2.5571 0.8897
26 1 2.9316 -3.5547 0.8397
27 1 0.7718 -5.0742 -0.6938
28 1 0.9536 -5.0104 1.0764
29 1 1.9403 -7.0910 0.1399
30 1 3.1847 -6.0647 0.8924
31 1 3.4977 -8.1819 -1.1639
32 1 4.9035 -7.2165 -0.6538
33 1 5.1264 -6.3854 -3.0169
34 1 5.1330 -9.4165 -2.6458
35 1 6.4667 -8.3077 -2.2442
36 1 6.6280 -7.6300 -4.6190
37 1 6.8252 -9.3911 -4.4525
38 1 5.3011 -8.9252 -6.2075
39 1 4.5514 -6.7283 -5.4510
40 1 3.2237 -7.8270 -5.8954
41 1 2.7830 -6.7073 -3.7202
42 1 2.9499 -8.4685 -3.5204
43 1 4.6846 -4.7840 -0.4958
44 1 4.5418 -4.8694 -2.2678
45 1 2.3482 -3.7280 -2.1528
46 1 3.6144 -2.7381 -1.3862
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000592397285.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:55:23
Heat of formation + Delta-G solvation = -46.809087 kcal
Electronic energy + Delta-G solvation = -21038.748054 eV
Core-core repulsion = 18153.566337 eV
Total energy + Delta-G solvation = -2885.181717 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 266.205 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-40.49535 -39.13358 -36.30800 -34.59037 -32.98507 -31.72586 -31.58216 -29.79388
-27.09261 -25.23818 -24.14596 -23.79898 -22.77299 -21.81809 -20.48285 -20.33036
-18.42648 -17.50788 -16.91747 -16.45603 -15.97470 -15.64891 -15.47727 -15.15086
-14.88541 -14.70009 -14.65154 -14.37612 -13.90509 -13.63502 -13.38208 -13.24601
-13.05460 -12.91869 -12.78962 -12.55721 -12.37060 -12.13603 -12.06142 -11.98953
-11.77040 -11.50051 -11.27055 -11.17171 -11.10714 -10.80192 -10.67098 -10.51589
-9.36954 -9.15297 -8.17410 -6.27179 1.38902 1.40108 1.50885 2.41394
2.98302 3.15580 3.35851 3.79334 3.93843 3.98706 4.08155 4.10408
4.14113 4.36120 4.38100 4.49482 4.50572 4.54759 4.61254 4.64433
4.71573 4.76697 4.83664 4.87116 4.90359 4.98305 5.00496 5.02344
5.11445 5.12875 5.18262 5.29402 5.38789 5.40591 5.44414 5.45830
5.56324 5.58544 5.81393 5.89698 6.12164 6.21632 6.27349 6.32429
6.54335 6.89009 7.41161 8.94575
Molecular weight = 266.21amu
Principal moments of inertia in cm(-1)
A = 0.028846 B = 0.003743 C = 0.003563
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 970.451208 B = 7478.514605 C = 7856.324898
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.936 5.936
2 C -0.002 4.002
3 Si 0.961 3.039
4 H -0.273 1.273
5 H -0.283 1.283
6 H -0.263 1.263
7 C -0.530 4.530
8 H 0.059 0.941
9 C 0.034 3.966
10 C -0.075 4.075
11 C -0.106 4.106
12 C 0.067 3.933
13 N -0.541 5.541
14 C 0.065 3.935
15 C -0.081 4.081
16 C -0.108 4.108
17 C 0.058 3.942
18 N -0.696 5.696
19 C 0.057 3.943
20 C -0.098 4.098
21 C 0.067 3.933
22 C -0.093 4.093
23 H 0.262 0.738
24 H -0.013 1.013
25 H -0.015 1.015
26 H 0.046 0.954
27 H 0.054 0.946
28 H 0.060 0.940
29 H 0.087 0.913
30 H 0.030 0.970
31 H 0.080 0.920
32 H 0.034 0.966
33 H 0.059 0.941
34 H 0.069 0.931
35 H 0.073 0.927
36 H 0.026 0.974
37 H 0.086 0.914
38 H 0.349 0.651
39 H 0.023 0.977
40 H 0.077 0.923
41 H 0.061 0.939
42 H 0.061 0.939
43 H 0.027 0.973
44 H 0.081 0.919
45 H 0.048 0.952
46 H 0.054 0.946
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.295 -18.654 -7.385 23.530
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.576 5.576
2 C -0.200 4.200
3 Si 0.785 3.215
4 H -0.198 1.198
5 H -0.209 1.209
6 H -0.188 1.188
7 C -0.568 4.568
8 H 0.078 0.922
9 C -0.003 4.003
10 C -0.093 4.093
11 C -0.144 4.144
12 C -0.060 4.060
13 N -0.266 5.266
14 C -0.062 4.062
15 C -0.100 4.100
16 C -0.147 4.147
17 C -0.071 4.071
18 N -0.328 5.328
19 C -0.072 4.072
20 C -0.136 4.136
21 C -0.061 4.061
22 C -0.131 4.131
23 H 0.071 0.929
24 H 0.006 0.994
25 H 0.003 0.997
26 H 0.064 0.936
27 H 0.073 0.927
28 H 0.079 0.921
29 H 0.105 0.895
30 H 0.049 0.951
31 H 0.098 0.902
32 H 0.052 0.948
33 H 0.077 0.923
34 H 0.088 0.912
35 H 0.091 0.909
36 H 0.044 0.956
37 H 0.105 0.895
38 H 0.168 0.832
39 H 0.041 0.959
40 H 0.095 0.905
41 H 0.079 0.921
42 H 0.079 0.921
43 H 0.045 0.955
44 H 0.099 0.901
45 H 0.067 0.933
46 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 11.463 -18.937 -7.301 23.309
hybrid contribution 0.874 2.047 0.282 2.244
sum 12.337 -16.890 -7.018 22.062
Atomic orbital electron populations
1.70104 1.07796 1.27561 1.52177 1.25962 0.95701 1.03224 0.95072
0.85515 0.78715 0.78793 0.78445 1.19831 1.20888 1.18766 1.21649
0.93343 0.92164 1.49626 0.92242 1.19001 0.93992 0.93067 0.94212
1.21084 0.96884 0.94391 0.96976 1.21590 0.97854 0.93891 1.01078
1.22002 0.95782 0.98712 0.89545 1.61882 1.28530 1.02100 1.34087
1.22142 0.94963 0.92875 0.96268 1.21195 0.96166 0.98464 0.94179
1.21592 0.98505 0.98345 0.96231 1.21932 0.92136 1.00132 0.92888
1.60304 1.16908 1.42959 1.12655 1.21927 0.95858 0.91546 0.97854
1.21443 0.97267 1.01565 0.93323 1.22045 0.94342 0.89198 1.00524
1.21401 0.97804 0.96758 0.97102 0.92935 0.99428 0.99665 0.93596
0.92685 0.92132 0.89470 0.95127 0.90197 0.94820 0.92261 0.91249
0.90882 0.95602 0.89520 0.83217 0.95865 0.90502 0.92072 0.92068
0.95472 0.90123 0.93337 0.92749
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -58.11 13.29 21.45 0.28 -57.83 16
2 C 0.00 -0.14 5.46 84.65 0.46 0.32 16
3 Si 0.96 44.95 29.54 68.60 2.03 46.97 16
4 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16
5 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16
6 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16
7 C -0.53 -30.47 8.45 25.60 0.22 -30.26 16
8 H 0.06 3.28 7.08 -2.91 -0.02 3.26 16
9 C 0.03 1.86 4.45 29.85 0.13 1.99 16
10 C -0.07 -3.15 2.20 -10.71 -0.02 -3.17 16
11 C -0.11 -3.75 5.38 30.65 0.16 -3.58 16
12 C 0.07 1.88 5.46 86.33 0.47 2.35 16
13 N -0.54 -14.73 4.18 -896.38 -3.75 -18.48 16
14 C 0.06 1.39 4.36 86.30 0.38 1.77 16
15 C -0.08 -1.60 2.18 -10.69 -0.02 -1.63 16
16 C -0.11 -1.74 5.38 30.65 0.16 -1.58 16
17 C 0.06 0.87 6.55 86.32 0.57 1.44 16
18 N -0.70 -11.30 6.85 -513.99 -3.52 -14.81 16
19 C 0.06 1.06 6.55 86.32 0.57 1.63 16
20 C -0.10 -2.07 5.24 30.67 0.16 -1.91 16
21 C 0.07 1.99 5.30 86.32 0.46 2.45 16
22 C -0.09 -3.55 5.15 30.64 0.16 -3.39 16
23 H 0.26 15.29 8.31 -92.72 -0.77 14.52 16
24 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16
25 H -0.02 -0.88 8.14 -2.38 -0.02 -0.90 16
26 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16
27 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16
28 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16
29 H 0.09 2.09 8.02 -2.39 -0.02 2.07 16
30 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16
31 H 0.08 1.60 7.99 -2.39 -0.02 1.58 16
32 H 0.03 0.70 8.12 -2.38 -0.02 0.68 16
33 H 0.06 1.30 6.22 -2.39 -0.01 1.28 16
34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16
35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16
36 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16
37 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16
38 H 0.35 4.42 8.90 -89.69 -0.80 3.62 16
39 H 0.02 0.45 8.14 -2.38 -0.02 0.43 16
40 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16
41 H 0.06 1.53 7.84 -2.39 -0.02 1.51 16
42 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16
43 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16
44 H 0.08 2.19 6.12 -2.39 -0.01 2.18 16
45 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16
46 H 0.05 2.23 7.06 -2.38 -0.02 2.21 16
Total: -1.00 -64.26 345.06 -0.99 -65.25
By element:
Atomic # 1 Polarization: 12.35 SS G_CDS: 0.12 Total: 12.47 kcal
Atomic # 6 Polarization: -37.42 SS G_CDS: 3.85 Total: -33.58 kcal
Atomic # 7 Polarization: -84.14 SS G_CDS: -6.98 Total: -91.12 kcal
Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal
Total: -64.26 -0.99 -65.25 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000592397285.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.444 kcal
(2) G-P(sol) polarization free energy of solvation -64.263 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.818 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.991 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.253 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.809 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds