Wall clock time and date at job start Mon Mar 30 2020 01:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46523 * 2 1 4 4 C 1.50697 * 109.47544 * 119.99949 * 2 1 3 5 5 H 1.07998 * 119.99903 * 119.82303 * 4 2 1 6 6 C 1.37882 * 120.00039 * 299.82700 * 4 2 1 7 7 N 1.31512 * 119.99563 * 1.45118 * 6 4 2 8 8 Si 1.86800 * 120.00016 * 181.44922 * 6 4 2 9 9 H 1.48492 * 109.47308 * 269.99947 * 8 6 4 10 10 H 1.48499 * 109.46708 * 30.00032 * 8 6 4 11 11 H 1.48500 * 109.46902 * 149.99883 * 8 6 4 12 12 C 1.52997 * 109.47381 * 240.00507 * 2 1 3 13 13 N 1.46901 * 109.47291 * 59.99233 * 12 2 1 14 14 C 1.46897 * 110.99952 * 180.02562 * 13 12 2 15 15 H 1.09003 * 109.67352 * 35.50615 * 14 13 12 16 16 C 1.53334 * 109.67862 * 275.00311 * 14 13 12 17 17 C 1.52823 * 108.10610 * 176.17526 * 16 14 13 18 18 C 1.50757 * 111.72755 * 58.92064 * 17 16 14 19 19 H 1.09008 * 109.25916 * 186.18691 * 18 17 16 20 20 C 1.53907 * 112.99928 * 65.10637 * 18 17 16 21 21 N 1.48232 * 104.02577 * 198.46398 * 20 18 17 22 22 C 1.47592 * 108.56558 * 23.32938 * 21 20 18 23 23 C 1.53985 * 113.91886 * 308.62014 * 18 17 16 24 24 H 1.09004 * 112.18460 * 280.81483 * 23 18 17 25 25 C 1.52598 * 109.67471 * 156.04523 * 14 13 12 26 26 H 1.08995 * 109.47071 * 292.73364 * 1 2 3 27 27 H 1.08997 * 109.47632 * 52.73874 * 1 2 3 28 28 H 1.09004 * 109.46395 * 172.73845 * 1 2 3 29 29 H 1.09005 * 109.46936 * 187.64366 * 3 2 1 30 30 H 1.08999 * 109.47133 * 307.64511 * 3 2 1 31 31 H 1.09003 * 109.47080 * 67.65130 * 3 2 1 32 32 H 0.97001 * 120.00607 * 357.01192 * 7 6 4 33 33 H 1.08995 * 109.47329 * 179.97438 * 12 2 1 34 34 H 1.09006 * 109.47151 * 299.99708 * 12 2 1 35 35 H 1.00906 * 110.99907 * 56.05163 * 13 12 2 36 36 H 1.09005 * 109.73062 * 295.82440 * 16 14 13 37 37 H 1.08995 * 109.73052 * 56.52028 * 16 14 13 38 38 H 1.08998 * 109.03048 * 179.49926 * 17 16 14 39 39 H 1.08996 * 109.02742 * 298.34576 * 17 16 14 40 40 H 1.09000 * 110.51520 * 317.09779 * 20 18 17 41 41 H 1.08997 * 110.51862 * 79.82777 * 20 18 17 42 42 H 1.00898 * 111.00584 * 145.59770 * 21 20 18 43 43 H 1.09006 * 109.96920 * 241.64891 * 22 21 20 44 44 H 1.08996 * 110.00359 * 120.40410 * 22 21 20 45 45 H 1.08999 * 109.15782 * 302.47456 * 25 14 13 46 46 H 1.08997 * 109.16530 * 61.67123 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6510 -1.5901 1.1313 6 6 1.7023 -0.2372 2.4827 7 7 0.9256 0.8171 2.6036 8 14 2.3583 -1.0938 4.0076 9 1 1.4060 -2.1524 4.4291 10 1 3.6762 -1.7065 3.7028 11 1 2.5142 -0.1036 5.1032 12 6 2.0400 -0.7211 -1.2493 13 7 1.5503 -0.0287 -2.4487 14 6 2.0208 -0.6950 -3.6703 15 1 2.0527 -1.7729 -3.5113 16 6 3.4213 -0.1846 -4.0301 17 6 3.9142 -0.9678 -5.2464 18 6 2.9897 -0.8063 -6.4262 19 1 3.3164 -1.4642 -7.2317 20 6 2.9408 0.6368 -6.9589 21 7 1.6943 0.6821 -7.7598 22 6 0.7880 -0.3789 -7.2790 23 6 1.5114 -1.0940 -6.1050 24 1 1.2970 -2.1623 -6.0752 25 6 1.0786 -0.3731 -4.8267 26 1 -0.3633 0.3971 0.9478 27 1 -0.3634 0.6222 -0.8179 28 1 -0.3632 -1.0195 -0.1299 29 1 3.1213 1.4457 -0.1367 30 1 1.5691 1.9943 -0.8137 31 1 1.7925 1.9154 0.9505 32 1 0.6202 1.2879 1.8123 33 1 3.1300 -0.7207 -1.2495 34 1 1.6767 -1.7489 -1.2493 35 1 1.8197 0.9437 -2.4402 36 1 3.3753 0.8776 -4.2702 37 1 4.0979 -0.3441 -3.1907 38 1 4.9066 -0.6102 -5.5210 39 1 3.9778 -2.0244 -4.9868 40 1 2.8908 1.3471 -6.1336 41 1 3.8069 0.8413 -7.5882 42 1 1.2559 1.5886 -7.6955 43 1 0.5882 -1.0895 -8.0811 44 1 -0.1465 0.0593 -6.9288 45 1 0.0686 -0.6873 -4.5632 46 1 1.0832 0.7024 -5.0033 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592470784.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:18 Heat of formation + Delta-G solvation = -12.096842 kcal Electronic energy + Delta-G solvation = -21564.254805 eV Core-core repulsion = 18680.578324 eV Total energy + Delta-G solvation = -2883.676482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.33656 -37.40525 -35.52904 -33.09155 -31.53198 -30.40016 -28.28774 -27.11182 -25.88963 -25.39839 -23.43944 -23.11991 -21.52402 -20.79268 -19.01457 -18.48891 -16.81576 -16.37453 -16.08301 -15.07556 -14.63299 -14.58364 -13.73491 -13.70434 -13.39728 -13.17500 -12.92012 -12.75892 -12.50139 -12.31512 -12.08155 -12.02074 -11.76429 -11.28501 -11.22189 -11.13112 -10.90246 -10.72802 -10.55393 -10.45575 -10.37252 -10.28373 -10.15358 -10.04901 -9.64010 -9.31304 -8.60938 -8.30339 -8.20352 -7.75297 -6.16166 -4.00659 3.45065 3.47823 3.63347 4.03962 4.29448 4.41191 4.55716 4.66025 4.89914 5.01365 5.01891 5.16065 5.27236 5.37453 5.40139 5.42712 5.48440 5.59327 5.63764 5.72324 5.73012 5.89287 5.92188 6.07711 6.10788 6.14415 6.20289 6.25186 6.36972 6.41698 6.49360 6.63994 6.65391 6.81368 6.92848 7.10773 7.13863 7.21072 7.27408 7.65112 7.68551 7.80626 7.98182 8.36927 8.49880 8.94589 9.70756 11.09538 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.040017 B = 0.003992 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.539865 B = 7012.699038 C = 7228.121193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.053 3.947 3 C -0.145 4.145 4 C -0.586 4.586 5 H 0.046 0.954 6 C 0.024 3.976 7 N -0.921 5.921 8 Si 1.065 2.935 9 H -0.289 1.289 10 H -0.291 1.291 11 H -0.286 1.286 12 C 0.085 3.915 13 N -0.684 5.684 14 C 0.088 3.912 15 H 0.073 0.927 16 C -0.149 4.149 17 C -0.102 4.102 18 C -0.090 4.090 19 H 0.073 0.927 20 C 0.049 3.951 21 N -0.686 5.686 22 C 0.047 3.953 23 C -0.103 4.103 24 H 0.087 0.913 25 C -0.099 4.099 26 H 0.061 0.939 27 H 0.025 0.975 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.020 0.980 31 H 0.068 0.932 32 H 0.283 0.717 33 H 0.015 0.985 34 H 0.056 0.944 35 H 0.335 0.665 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.075 0.925 42 H 0.337 0.663 43 H 0.070 0.930 44 H 0.055 0.945 45 H 0.069 0.931 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.918 -1.322 -17.797 18.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.052 3.948 3 C -0.203 4.203 4 C -0.625 4.625 5 H 0.064 0.936 6 C -0.180 4.180 7 N -0.562 5.562 8 Si 0.894 3.106 9 H -0.216 1.216 10 H -0.217 1.217 11 H -0.211 1.211 12 C -0.044 4.044 13 N -0.313 5.313 14 C -0.022 4.022 15 H 0.091 0.909 16 C -0.189 4.189 17 C -0.141 4.141 18 C -0.109 4.109 19 H 0.091 0.909 20 C -0.080 4.080 21 N -0.315 5.315 22 C -0.082 4.082 23 C -0.123 4.123 24 H 0.105 0.895 25 C -0.137 4.137 26 H 0.079 0.921 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.039 0.961 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.154 0.846 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.152 0.848 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.087 0.913 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.502 -1.972 -16.691 16.992 hybrid contribution 0.776 0.547 -0.855 1.278 sum 3.277 -1.424 -17.546 17.906 Atomic orbital electron populations 1.21854 0.97990 0.99012 1.00022 1.18271 0.92650 0.91906 0.91950 1.22053 0.98371 0.99247 1.00671 1.21881 1.34993 1.13848 0.91800 0.93613 1.25611 0.94887 0.96628 1.00869 1.70807 1.31646 1.18887 1.34829 0.83609 0.75756 0.75547 0.75652 1.21593 1.21705 1.21138 1.22031 0.95608 0.97526 0.89186 1.60660 1.63267 1.06201 1.01200 1.21513 0.91319 0.98877 0.90526 0.90876 1.22347 0.98810 0.99916 0.97793 1.20842 0.98206 1.00770 0.94285 1.21389 0.95104 0.96782 0.97642 0.90904 1.22778 0.93143 0.96705 0.95340 1.62002 1.06087 1.07786 1.55606 1.22935 0.94924 0.94339 0.95994 1.22413 0.94652 1.00131 0.95088 0.89473 1.21511 0.99804 0.99545 0.92827 0.92068 0.95573 0.95291 0.95326 0.96104 0.91320 0.90090 0.96701 0.92544 0.84624 0.92038 0.91720 0.92138 0.91808 0.93393 0.90716 0.84808 0.91122 0.92629 0.91278 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 7.90 37.16 0.29 -2.86 16 2 C 0.05 1.27 0.57 -155.66 -0.09 1.18 16 3 C -0.15 -3.36 7.61 37.16 0.28 -3.08 16 4 C -0.59 -16.06 8.01 -34.44 -0.28 -16.34 16 5 H 0.05 1.26 7.74 -52.49 -0.41 0.86 16 6 C 0.02 0.66 5.10 -17.82 -0.09 0.57 16 7 N -0.92 -26.89 12.12 55.43 0.67 -26.22 16 8 Si 1.07 25.04 29.90 -169.99 -5.08 19.96 16 9 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.08 1.75 4.38 -3.82 -0.02 1.74 16 13 N -0.68 -11.76 5.62 -106.76 -0.60 -12.36 16 14 C 0.09 1.24 2.44 -67.75 -0.16 1.07 16 15 H 0.07 1.09 7.82 -51.93 -0.41 0.69 16 16 C -0.15 -1.87 5.09 -26.65 -0.14 -2.01 16 17 C -0.10 -1.08 5.37 -27.95 -0.15 -1.23 16 18 C -0.09 -0.91 2.81 -90.76 -0.25 -1.16 16 19 H 0.07 0.73 8.14 -51.92 -0.42 0.30 16 20 C 0.05 0.49 6.52 -2.62 -0.02 0.47 16 21 N -0.69 -6.79 7.41 -110.37 -0.82 -7.60 16 22 C 0.05 0.46 6.88 -2.21 -0.02 0.44 16 23 C -0.10 -1.07 3.60 -88.86 -0.32 -1.39 16 24 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 25 C -0.10 -1.20 4.24 -26.93 -0.11 -1.31 16 26 H 0.06 1.61 5.19 -51.93 -0.27 1.34 16 27 H 0.03 0.57 7.80 -51.93 -0.41 0.17 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 30 H 0.02 0.42 6.94 -51.93 -0.36 0.06 16 31 H 0.07 1.76 5.25 -51.93 -0.27 1.49 16 32 H 0.28 8.06 3.56 -40.82 -0.15 7.92 16 33 H 0.01 0.31 7.42 -51.93 -0.39 -0.07 16 34 H 0.06 1.21 8.06 -51.93 -0.42 0.80 16 35 H 0.34 5.76 6.71 -39.29 -0.26 5.49 16 36 H 0.06 0.76 6.80 -51.93 -0.35 0.41 16 37 H 0.06 0.90 7.42 -51.93 -0.39 0.52 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.49 6.14 -51.93 -0.32 0.18 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.34 2.97 8.91 -39.29 -0.35 2.62 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.52 7.74 -51.93 -0.40 0.12 16 45 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.05 0.67 7.15 -51.93 -0.37 0.30 16 LS Contribution 330.82 15.07 4.99 4.99 Total: -1.00 -28.25 330.82 -10.02 -38.28 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -8.11 Total: 6.86 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: -1.07 Total: -23.89 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: -0.75 Total: -46.19 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.08 Total: 19.96 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.25 -10.02 -38.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592470784.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.181 kcal (2) G-P(sol) polarization free energy of solvation -28.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds