Wall clock time and date at job start Mon Mar 30 2020 01:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46523 * 2 1 4 4 C 1.50697 * 109.47544 * 119.99949 * 2 1 3 5 5 H 1.07998 * 119.99903 * 119.82303 * 4 2 1 6 6 C 1.37882 * 120.00039 * 299.82700 * 4 2 1 7 7 N 1.31512 * 119.99563 * 1.45118 * 6 4 2 8 8 Si 1.86800 * 120.00016 * 181.44922 * 6 4 2 9 9 H 1.48492 * 109.47308 * 269.99947 * 8 6 4 10 10 H 1.48499 * 109.46708 * 30.00032 * 8 6 4 11 11 H 1.48500 * 109.46902 * 149.99883 * 8 6 4 12 12 C 1.52997 * 109.47381 * 240.00507 * 2 1 3 13 13 N 1.46901 * 109.47291 * 59.99233 * 12 2 1 14 14 C 1.46897 * 110.99952 * 180.02562 * 13 12 2 15 15 H 1.09003 * 109.67352 * 35.50615 * 14 13 12 16 16 C 1.53334 * 109.67862 * 275.00311 * 14 13 12 17 17 C 1.52823 * 108.10610 * 176.17526 * 16 14 13 18 18 C 1.50757 * 111.72755 * 58.92064 * 17 16 14 19 19 H 1.09008 * 109.25916 * 186.18691 * 18 17 16 20 20 C 1.53907 * 112.99928 * 65.10637 * 18 17 16 21 21 N 1.48232 * 104.02577 * 198.46398 * 20 18 17 22 22 C 1.47592 * 108.56558 * 23.32938 * 21 20 18 23 23 C 1.53985 * 113.91886 * 308.62014 * 18 17 16 24 24 H 1.09004 * 112.18460 * 280.81483 * 23 18 17 25 25 C 1.52598 * 109.67471 * 156.04523 * 14 13 12 26 26 H 1.08995 * 109.47071 * 292.73364 * 1 2 3 27 27 H 1.08997 * 109.47632 * 52.73874 * 1 2 3 28 28 H 1.09004 * 109.46395 * 172.73845 * 1 2 3 29 29 H 1.09005 * 109.46936 * 187.64366 * 3 2 1 30 30 H 1.08999 * 109.47133 * 307.64511 * 3 2 1 31 31 H 1.09003 * 109.47080 * 67.65130 * 3 2 1 32 32 H 0.97001 * 120.00607 * 357.01192 * 7 6 4 33 33 H 1.08995 * 109.47329 * 179.97438 * 12 2 1 34 34 H 1.09006 * 109.47151 * 299.99708 * 12 2 1 35 35 H 1.00906 * 110.99907 * 56.05163 * 13 12 2 36 36 H 1.09005 * 109.73062 * 295.82440 * 16 14 13 37 37 H 1.08995 * 109.73052 * 56.52028 * 16 14 13 38 38 H 1.08998 * 109.03048 * 179.49926 * 17 16 14 39 39 H 1.08996 * 109.02742 * 298.34576 * 17 16 14 40 40 H 1.09000 * 110.51520 * 317.09779 * 20 18 17 41 41 H 1.08997 * 110.51862 * 79.82777 * 20 18 17 42 42 H 1.00898 * 111.00584 * 145.59770 * 21 20 18 43 43 H 1.09006 * 109.96920 * 241.64891 * 22 21 20 44 44 H 1.08996 * 110.00359 * 120.40410 * 22 21 20 45 45 H 1.08999 * 109.15782 * 302.47456 * 25 14 13 46 46 H 1.08997 * 109.16530 * 61.67123 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6510 -1.5901 1.1313 6 6 1.7023 -0.2372 2.4827 7 7 0.9256 0.8171 2.6036 8 14 2.3583 -1.0938 4.0076 9 1 1.4060 -2.1524 4.4291 10 1 3.6762 -1.7065 3.7028 11 1 2.5142 -0.1036 5.1032 12 6 2.0400 -0.7211 -1.2493 13 7 1.5503 -0.0287 -2.4487 14 6 2.0208 -0.6950 -3.6703 15 1 2.0527 -1.7729 -3.5113 16 6 3.4213 -0.1846 -4.0301 17 6 3.9142 -0.9678 -5.2464 18 6 2.9897 -0.8063 -6.4262 19 1 3.3164 -1.4642 -7.2317 20 6 2.9408 0.6368 -6.9589 21 7 1.6943 0.6821 -7.7598 22 6 0.7880 -0.3789 -7.2790 23 6 1.5114 -1.0940 -6.1050 24 1 1.2970 -2.1623 -6.0752 25 6 1.0786 -0.3731 -4.8267 26 1 -0.3633 0.3971 0.9478 27 1 -0.3634 0.6222 -0.8179 28 1 -0.3632 -1.0195 -0.1299 29 1 3.1213 1.4457 -0.1367 30 1 1.5691 1.9943 -0.8137 31 1 1.7925 1.9154 0.9505 32 1 0.6202 1.2879 1.8123 33 1 3.1300 -0.7207 -1.2495 34 1 1.6767 -1.7489 -1.2493 35 1 1.8197 0.9437 -2.4402 36 1 3.3753 0.8776 -4.2702 37 1 4.0979 -0.3441 -3.1907 38 1 4.9066 -0.6102 -5.5210 39 1 3.9778 -2.0244 -4.9868 40 1 2.8908 1.3471 -6.1336 41 1 3.8069 0.8413 -7.5882 42 1 1.2559 1.5886 -7.6955 43 1 0.5882 -1.0895 -8.0811 44 1 -0.1465 0.0593 -6.9288 45 1 0.0686 -0.6873 -4.5632 46 1 1.0832 0.7024 -5.0033 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592470784.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:17 Heat of formation + Delta-G solvation = -29.665841 kcal Electronic energy + Delta-G solvation = -21565.016654 eV Core-core repulsion = 18680.578324 eV Total energy + Delta-G solvation = -2884.438330 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.24994 -39.03865 -36.89307 -34.39902 -32.79132 -31.78339 -29.45836 -28.07362 -27.81661 -27.37161 -25.11842 -24.03611 -22.54091 -21.73988 -20.64823 -19.73762 -18.73602 -17.18580 -16.93128 -16.46721 -15.97227 -15.70992 -15.60021 -15.06522 -14.87877 -14.45363 -14.11872 -13.98538 -13.67803 -13.45727 -13.37570 -13.24497 -12.99746 -12.94049 -12.66943 -12.50580 -12.44627 -12.36488 -12.12170 -11.92729 -11.86835 -11.57706 -11.43592 -11.28605 -11.10338 -11.04299 -10.36539 -10.26621 -9.37473 -9.16343 -8.34202 -6.20421 1.54522 1.61882 1.78931 2.61010 3.21273 3.28247 3.29485 3.56543 3.70928 3.91758 4.03234 4.12716 4.18755 4.33497 4.39574 4.43035 4.49401 4.50193 4.60214 4.62200 4.66537 4.73478 4.83293 4.87705 4.90154 4.93681 5.00969 5.04811 5.05784 5.16664 5.19097 5.22488 5.26385 5.27374 5.32239 5.39788 5.43799 5.72206 5.87635 5.90145 6.13889 6.25857 6.42305 6.43525 6.55143 6.81388 7.57890 8.92340 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.040017 B = 0.003992 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.539865 B = 7012.699038 C = 7228.121193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.042 3.958 3 C -0.133 4.133 4 C -0.602 4.602 5 H 0.036 0.964 6 C -0.021 4.021 7 N -0.944 5.944 8 Si 1.106 2.894 9 H -0.279 1.279 10 H -0.277 1.277 11 H -0.286 1.286 12 C 0.103 3.897 13 N -0.684 5.684 14 C 0.088 3.912 15 H 0.063 0.937 16 C -0.143 4.143 17 C -0.097 4.097 18 C -0.087 4.087 19 H 0.079 0.921 20 C 0.050 3.950 21 N -0.691 5.691 22 C 0.050 3.950 23 C -0.101 4.101 24 H 0.092 0.908 25 C -0.088 4.088 26 H 0.035 0.965 27 H 0.043 0.957 28 H 0.021 0.979 29 H 0.029 0.971 30 H 0.045 0.955 31 H 0.041 0.959 32 H 0.278 0.722 33 H 0.009 0.991 34 H 0.044 0.956 35 H 0.337 0.663 36 H 0.065 0.935 37 H 0.048 0.952 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.043 0.957 41 H 0.081 0.919 42 H 0.343 0.657 43 H 0.076 0.924 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.465 -1.551 -19.371 19.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.041 3.959 3 C -0.191 4.191 4 C -0.640 4.640 5 H 0.054 0.946 6 C -0.220 4.220 7 N -0.586 5.586 8 Si 0.930 3.070 9 H -0.205 1.205 10 H -0.202 1.202 11 H -0.212 1.212 12 C -0.027 4.027 13 N -0.314 5.314 14 C -0.022 4.022 15 H 0.082 0.918 16 C -0.182 4.182 17 C -0.136 4.136 18 C -0.106 4.106 19 H 0.098 0.902 20 C -0.078 4.078 21 N -0.320 5.320 22 C -0.079 4.079 23 C -0.120 4.120 24 H 0.110 0.890 25 C -0.126 4.126 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.040 0.960 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.027 0.973 34 H 0.062 0.938 35 H 0.156 0.844 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.061 0.939 41 H 0.099 0.901 42 H 0.159 0.841 43 H 0.094 0.906 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.047 -2.201 -18.295 18.678 hybrid contribution 0.588 0.625 -0.421 0.956 sum 3.635 -1.577 -18.717 19.132 Atomic orbital electron populations 1.21688 0.98042 0.98595 0.99175 1.18346 0.92573 0.92541 0.92452 1.21879 0.98541 0.98626 1.00054 1.22232 1.34685 1.13693 0.93405 0.94596 1.26806 0.94685 0.96706 1.03843 1.70879 1.32937 1.19880 1.34869 0.83063 0.76088 0.74985 0.72845 1.20535 1.20206 1.21155 1.21647 0.94961 0.96656 0.89392 1.60597 1.63424 1.06200 1.01155 1.21578 0.92884 0.98058 0.89714 0.91827 1.22239 0.97285 1.00453 0.98191 1.20797 0.98914 1.00402 0.93455 1.21362 0.94578 0.97146 0.97491 0.90225 1.22773 0.93426 0.96322 0.95306 1.62021 1.06197 1.08238 1.55584 1.22915 0.94892 0.94371 0.95740 1.22393 0.95141 1.00269 0.94244 0.89013 1.21398 0.98657 0.99736 0.92817 0.94628 0.93844 0.96026 0.95220 0.93648 0.94049 0.90618 0.97305 0.93757 0.84421 0.91599 0.93345 0.90889 0.91826 0.93854 0.90100 0.84137 0.90602 0.92387 0.92316 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.64 7.90 71.98 0.57 -5.08 16 2 C 0.04 2.00 0.57 -52.93 -0.03 1.97 16 3 C -0.13 -6.11 7.61 71.98 0.55 -5.56 16 4 C -0.60 -33.20 8.01 25.60 0.21 -32.99 16 5 H 0.04 2.00 7.74 -2.91 -0.02 1.98 16 6 C -0.02 -1.20 5.10 84.66 0.43 -0.77 16 7 N -0.94 -55.80 12.12 21.45 0.26 -55.54 16 8 Si 1.11 50.41 29.90 68.60 2.05 52.46 16 9 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 10 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 12 C 0.10 4.21 4.38 86.30 0.38 4.59 16 13 N -0.68 -22.85 5.62 -491.69 -2.76 -25.62 16 14 C 0.09 2.35 2.44 44.89 0.11 2.46 16 15 H 0.06 1.85 7.82 -2.39 -0.02 1.83 16 16 C -0.14 -3.36 5.09 30.65 0.16 -3.20 16 17 C -0.10 -1.83 5.37 29.81 0.16 -1.67 16 18 C -0.09 -1.53 2.81 -10.88 -0.03 -1.56 16 19 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 20 C 0.05 0.87 6.52 86.35 0.56 1.43 16 21 N -0.69 -12.01 7.41 -503.09 -3.73 -15.74 16 22 C 0.05 0.86 6.88 86.97 0.60 1.45 16 23 C -0.10 -1.87 3.60 -9.66 -0.03 -1.90 16 24 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 25 C -0.09 -1.99 4.24 30.46 0.13 -1.86 16 26 H 0.03 1.89 5.19 -2.39 -0.01 1.88 16 27 H 0.04 1.89 7.80 -2.39 -0.02 1.87 16 28 H 0.02 1.01 8.14 -2.38 -0.02 1.00 16 29 H 0.03 1.30 8.13 -2.38 -0.02 1.28 16 30 H 0.04 1.81 6.94 -2.39 -0.02 1.80 16 31 H 0.04 2.13 5.25 -2.39 -0.01 2.12 16 32 H 0.28 16.18 3.56 -92.71 -0.33 15.85 16 33 H 0.01 0.37 7.42 -2.39 -0.02 0.35 16 34 H 0.04 1.91 8.06 -2.38 -0.02 1.89 16 35 H 0.34 11.08 6.71 -89.69 -0.60 10.48 16 36 H 0.07 1.50 6.80 -2.38 -0.02 1.49 16 37 H 0.05 1.30 7.42 -2.39 -0.02 1.29 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.04 0.79 6.14 -2.39 -0.01 0.78 16 41 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 42 H 0.34 5.27 8.91 -89.70 -0.80 4.48 16 43 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 44 H 0.06 0.97 7.74 -2.39 -0.02 0.95 16 45 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.05 1.24 7.15 -2.39 -0.02 1.22 16 Total: -1.00 -59.73 330.82 -0.43 -60.16 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: -0.01 Total: 26.95 kcal Atomic # 6 Polarization: -46.44 SS G_CDS: 3.75 Total: -42.69 kcal Atomic # 7 Polarization: -90.66 SS G_CDS: -6.23 Total: -96.89 kcal Atomic # 14 Polarization: 50.41 SS G_CDS: 2.05 Total: 52.46 kcal Total: -59.73 -0.43 -60.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592470784.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.495 kcal (2) G-P(sol) polarization free energy of solvation -59.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds