Wall clock time and date at job start Mon Mar 30 2020 01:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46922 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00194 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.53001 * 109.46989 * 240.00202 * 2 1 3 13 13 N 1.46902 * 109.47217 * 60.00052 * 12 2 1 14 14 C 1.46901 * 110.99931 * 179.97438 * 13 12 2 15 15 H 1.09003 * 109.03263 * 33.95882 * 14 13 12 16 16 C 1.52528 * 109.04454 * 275.00129 * 14 13 12 17 17 C 1.53805 * 111.68977 * 185.35516 * 16 14 13 18 18 C 1.51628 * 107.03463 * 57.54910 * 17 16 14 19 19 H 1.09003 * 110.49412 * 56.34635 * 18 17 16 20 20 C 1.53077 * 116.62719 * 183.68030 * 18 17 16 21 21 N 1.49072 * 103.41544 * 155.97252 * 20 18 17 22 22 C 1.48647 * 108.29960 * 335.65002 * 21 20 18 23 23 C 1.52346 * 105.83658 * 356.79792 * 22 21 20 24 24 H 1.09000 * 109.87616 * 272.31575 * 23 22 21 25 25 C 1.51458 * 117.39113 * 145.39374 * 23 22 21 26 26 H 1.08997 * 109.47359 * 300.00345 * 1 2 3 27 27 H 1.09007 * 109.47356 * 59.99868 * 1 2 3 28 28 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47106 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47089 * 299.99981 * 3 2 1 31 31 H 1.08995 * 109.47131 * 60.00150 * 3 2 1 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.46926 * 179.97438 * 12 2 1 34 34 H 1.08998 * 109.46837 * 300.00010 * 12 2 1 35 35 H 1.00894 * 110.99798 * 56.04180 * 13 12 2 36 36 H 1.08998 * 109.03525 * 305.92342 * 16 14 13 37 37 H 1.08995 * 109.03843 * 64.78431 * 16 14 13 38 38 H 1.09000 * 109.94010 * 176.93104 * 17 16 14 39 39 H 1.09004 * 109.94142 * 298.08583 * 17 16 14 40 40 H 1.09004 * 110.63154 * 274.45572 * 20 18 17 41 41 H 1.08994 * 110.62830 * 37.49224 * 20 18 17 42 42 H 1.00902 * 110.99751 * 213.55783 * 21 20 18 43 43 H 1.08997 * 110.17793 * 115.89190 * 22 21 20 44 44 H 1.09006 * 110.17535 * 237.63360 * 22 21 20 45 45 H 1.09002 * 109.93829 * 61.79031 * 25 23 22 46 46 H 1.09004 * 109.93424 * 300.56814 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 1.8269 -0.4200 5.2204 10 1 1.8258 -2.5203 4.0076 11 1 3.8063 -1.1210 4.0081 12 6 2.0400 -0.7212 -1.2493 13 7 1.5503 -0.0287 -2.4487 14 6 2.0218 -0.6944 -3.6704 15 1 2.0765 -1.7683 -3.4915 16 6 3.4144 -0.1757 -4.0141 17 6 3.9137 -0.7347 -5.3571 18 6 2.8952 -0.3400 -6.4088 19 1 2.7564 0.7411 -6.4188 20 6 3.1351 -0.8640 -7.8269 21 7 1.7741 -0.8523 -8.4348 22 6 0.7729 -0.9380 -7.3394 23 6 1.5757 -1.0836 -6.0529 24 1 1.7830 -2.1367 -5.8626 25 6 1.0199 -0.4267 -4.8065 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.7089 1.1613 3.4844 33 1 3.1300 -0.7208 -1.2495 34 1 1.6766 -1.7488 -1.2493 35 1 1.8197 0.9436 -2.4401 36 1 3.3844 0.9124 -4.0710 37 1 4.1079 -0.4702 -3.2265 38 1 4.8853 -0.3046 -5.6006 39 1 3.9914 -1.8206 -5.3020 40 1 3.8056 -0.2005 -8.3733 41 1 3.5347 -1.8777 -7.7992 42 1 1.6627 -1.6142 -9.0869 43 1 0.1724 -0.0289 -7.3070 44 1 0.1310 -1.8071 -7.4838 45 1 0.0513 -0.8607 -4.5580 46 1 0.9172 0.6466 -4.9664 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592470786.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:22 Heat of formation + Delta-G solvation = -15.409005 kcal Electronic energy + Delta-G solvation = -21307.146760 eV Core-core repulsion = 18423.326653 eV Total energy + Delta-G solvation = -2883.820108 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.15287 -37.24220 -35.35975 -32.86555 -31.53985 -30.60536 -28.28988 -26.94334 -25.54790 -25.18940 -23.68509 -22.85777 -20.84257 -20.60243 -20.13302 -18.41305 -16.40944 -15.93718 -15.41721 -15.09333 -14.66068 -14.31964 -14.14540 -13.97436 -13.36270 -12.92043 -12.90880 -12.64805 -12.57199 -12.20819 -12.00395 -11.85863 -11.52641 -11.12201 -11.09949 -10.98716 -10.82243 -10.70931 -10.63955 -10.57203 -10.30437 -10.17638 -10.04077 -9.91065 -9.36756 -9.02682 -8.66918 -8.61520 -8.27557 -7.63324 -5.89921 -4.00378 3.32972 3.37828 3.40356 4.00141 4.23930 4.44931 4.54162 4.68239 4.91993 5.00017 5.14213 5.28593 5.35306 5.37508 5.40263 5.45552 5.51965 5.63170 5.63716 5.69948 5.84655 5.92923 6.01196 6.16661 6.18746 6.20934 6.35551 6.38563 6.45818 6.53518 6.59588 6.74341 6.91599 7.09800 7.11957 7.18855 7.40470 7.50007 7.77006 7.77722 7.85911 8.02291 8.23310 8.36677 8.57548 9.00991 9.64449 11.10503 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.043120 B = 0.003750 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.192189 B = 7465.478249 C = 7677.518337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.069 3.931 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.050 0.950 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.888 3.112 9 H -0.288 1.288 10 H -0.278 1.278 11 H -0.279 1.279 12 C 0.076 3.924 13 N -0.682 5.682 14 C 0.088 3.912 15 H 0.067 0.933 16 C -0.146 4.146 17 C -0.101 4.101 18 C -0.101 4.101 19 H 0.084 0.916 20 C 0.050 3.950 21 N -0.687 5.687 22 C 0.053 3.947 23 C -0.114 4.114 24 H 0.070 0.930 25 C -0.087 4.087 26 H 0.073 0.927 27 H 0.020 0.980 28 H 0.017 0.983 29 H 0.018 0.982 30 H 0.010 0.990 31 H 0.083 0.917 32 H 0.258 0.742 33 H 0.012 0.988 34 H 0.054 0.946 35 H 0.337 0.663 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.043 0.957 42 H 0.335 0.665 43 H 0.077 0.923 44 H 0.054 0.946 45 H 0.069 0.931 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.903 -2.630 -18.078 18.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.068 3.932 3 C -0.189 4.189 4 C -0.546 4.546 5 H 0.069 0.931 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.717 3.283 9 H -0.214 1.214 10 H -0.204 1.204 11 H -0.205 1.205 12 C -0.052 4.052 13 N -0.312 5.312 14 C -0.023 4.023 15 H 0.085 0.915 16 C -0.185 4.185 17 C -0.140 4.140 18 C -0.120 4.120 19 H 0.102 0.898 20 C -0.079 4.079 21 N -0.315 5.315 22 C -0.076 4.076 23 C -0.134 4.134 24 H 0.088 0.912 25 C -0.125 4.125 26 H 0.092 0.908 27 H 0.039 0.961 28 H 0.036 0.964 29 H 0.037 0.963 30 H 0.029 0.971 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.030 0.970 34 H 0.072 0.928 35 H 0.156 0.844 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.061 0.939 42 H 0.150 0.850 43 H 0.095 0.905 44 H 0.072 0.928 45 H 0.088 0.912 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.154 -2.123 -17.988 18.241 hybrid contribution 1.489 -1.260 1.193 2.286 sum 3.643 -3.383 -16.795 17.516 Atomic orbital electron populations 1.21632 0.97425 0.98503 1.00050 1.18087 0.93178 0.91942 0.89998 1.21825 0.97622 0.99209 1.00254 1.21081 1.31131 1.11844 0.90559 0.93139 1.24885 0.95041 0.94973 0.98658 1.69826 1.36761 1.22777 1.22988 0.86728 0.79081 0.79853 0.82686 1.21358 1.20413 1.20499 1.22167 0.95462 0.97623 0.89975 1.60732 1.63142 1.06335 1.01014 1.21584 0.91007 0.98751 0.90929 0.91469 1.22306 0.98526 1.00866 0.96840 1.21288 0.97742 1.00626 0.94305 1.22048 0.95904 1.00755 0.93252 0.89805 1.22622 0.90951 0.99586 0.94714 1.62619 1.02670 1.50010 1.16184 1.22344 0.94343 1.01457 0.89461 1.22100 0.96137 0.99897 0.95293 0.91187 1.21218 0.98754 1.00499 0.92059 0.90804 0.96099 0.96397 0.96315 0.97070 0.89867 0.93149 0.96971 0.92783 0.84360 0.92085 0.91925 0.92015 0.92007 0.90479 0.93863 0.85049 0.90473 0.92793 0.91225 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.90 8.09 37.16 0.30 -2.60 16 2 C 0.07 1.66 0.57 -155.66 -0.09 1.57 16 3 C -0.13 -3.11 7.92 37.16 0.29 -2.81 16 4 C -0.51 -13.72 8.01 -34.44 -0.28 -14.00 16 5 H 0.05 1.36 7.74 -52.49 -0.41 0.96 16 6 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 7 N -0.88 -24.61 9.35 55.43 0.52 -24.09 16 8 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.08 1.58 4.36 -3.82 -0.02 1.57 16 13 N -0.68 -11.95 5.44 -106.52 -0.58 -12.53 16 14 C 0.09 1.26 2.46 -67.52 -0.17 1.09 16 15 H 0.07 1.02 7.76 -51.93 -0.40 0.62 16 16 C -0.15 -1.87 5.09 -26.55 -0.14 -2.01 16 17 C -0.10 -1.06 5.71 -27.01 -0.15 -1.22 16 18 C -0.10 -1.04 2.47 -89.90 -0.22 -1.26 16 19 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 20 C 0.05 0.46 7.22 -2.58 -0.02 0.44 16 21 N -0.69 -6.56 7.48 -111.08 -0.83 -7.39 16 22 C 0.05 0.52 7.30 -3.19 -0.02 0.50 16 23 C -0.11 -1.22 2.29 -90.36 -0.21 -1.43 16 24 H 0.07 0.77 7.94 -51.93 -0.41 0.36 16 25 C -0.09 -1.08 5.30 -27.08 -0.14 -1.23 16 26 H 0.07 1.98 6.07 -51.93 -0.32 1.67 16 27 H 0.02 0.46 7.60 -51.93 -0.39 0.07 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 31 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 32 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.01 0.25 7.46 -51.93 -0.39 -0.13 16 34 H 0.05 1.16 8.04 -51.93 -0.42 0.74 16 35 H 0.34 5.92 6.39 -39.29 -0.25 5.67 16 36 H 0.06 0.79 7.98 -51.93 -0.41 0.37 16 37 H 0.06 0.88 7.50 -51.93 -0.39 0.49 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.65 7.99 -51.93 -0.41 0.23 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.33 2.63 8.93 -39.29 -0.35 2.28 16 43 H 0.08 0.80 8.08 -51.93 -0.42 0.39 16 44 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.06 0.83 8.07 -51.93 -0.42 0.41 16 LS Contribution 338.64 15.07 5.10 5.10 Total: -1.00 -27.05 338.64 -10.32 -37.37 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -8.57 Total: 5.07 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -0.95 Total: -19.70 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: -0.89 Total: -44.02 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.05 -10.32 -37.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592470786.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.962 kcal (2) G-P(sol) polarization free energy of solvation -27.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds