Wall clock time and date at job start Mon Mar 30 2020 01:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46922 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00194 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.53001 * 109.46989 * 240.00202 * 2 1 3 13 13 N 1.46902 * 109.47217 * 60.00052 * 12 2 1 14 14 C 1.46901 * 110.99931 * 179.97438 * 13 12 2 15 15 H 1.09003 * 109.03263 * 33.95882 * 14 13 12 16 16 C 1.52528 * 109.04454 * 275.00129 * 14 13 12 17 17 C 1.53805 * 111.68977 * 185.35516 * 16 14 13 18 18 C 1.51628 * 107.03463 * 57.54910 * 17 16 14 19 19 H 1.09003 * 110.49412 * 56.34635 * 18 17 16 20 20 C 1.53077 * 116.62719 * 183.68030 * 18 17 16 21 21 N 1.49072 * 103.41544 * 155.97252 * 20 18 17 22 22 C 1.48647 * 108.29960 * 335.65002 * 21 20 18 23 23 C 1.52346 * 105.83658 * 356.79792 * 22 21 20 24 24 H 1.09000 * 109.87616 * 272.31575 * 23 22 21 25 25 C 1.51458 * 117.39113 * 145.39374 * 23 22 21 26 26 H 1.08997 * 109.47359 * 300.00345 * 1 2 3 27 27 H 1.09007 * 109.47356 * 59.99868 * 1 2 3 28 28 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47106 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47089 * 299.99981 * 3 2 1 31 31 H 1.08995 * 109.47131 * 60.00150 * 3 2 1 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.46926 * 179.97438 * 12 2 1 34 34 H 1.08998 * 109.46837 * 300.00010 * 12 2 1 35 35 H 1.00894 * 110.99798 * 56.04180 * 13 12 2 36 36 H 1.08998 * 109.03525 * 305.92342 * 16 14 13 37 37 H 1.08995 * 109.03843 * 64.78431 * 16 14 13 38 38 H 1.09000 * 109.94010 * 176.93104 * 17 16 14 39 39 H 1.09004 * 109.94142 * 298.08583 * 17 16 14 40 40 H 1.09004 * 110.63154 * 274.45572 * 20 18 17 41 41 H 1.08994 * 110.62830 * 37.49224 * 20 18 17 42 42 H 1.00902 * 110.99751 * 213.55783 * 21 20 18 43 43 H 1.08997 * 110.17793 * 115.89190 * 22 21 20 44 44 H 1.09006 * 110.17535 * 237.63360 * 22 21 20 45 45 H 1.09002 * 109.93829 * 61.79031 * 25 23 22 46 46 H 1.09004 * 109.93424 * 300.56814 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 1.8269 -0.4200 5.2204 10 1 1.8258 -2.5203 4.0076 11 1 3.8063 -1.1210 4.0081 12 6 2.0400 -0.7212 -1.2493 13 7 1.5503 -0.0287 -2.4487 14 6 2.0218 -0.6944 -3.6704 15 1 2.0765 -1.7683 -3.4915 16 6 3.4144 -0.1757 -4.0141 17 6 3.9137 -0.7347 -5.3571 18 6 2.8952 -0.3400 -6.4088 19 1 2.7564 0.7411 -6.4188 20 6 3.1351 -0.8640 -7.8269 21 7 1.7741 -0.8523 -8.4348 22 6 0.7729 -0.9380 -7.3394 23 6 1.5757 -1.0836 -6.0529 24 1 1.7830 -2.1367 -5.8626 25 6 1.0199 -0.4267 -4.8065 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.7089 1.1613 3.4844 33 1 3.1300 -0.7208 -1.2495 34 1 1.6766 -1.7488 -1.2493 35 1 1.8197 0.9436 -2.4401 36 1 3.3844 0.9124 -4.0710 37 1 4.1079 -0.4702 -3.2265 38 1 4.8853 -0.3046 -5.6006 39 1 3.9914 -1.8206 -5.3020 40 1 3.8056 -0.2005 -8.3733 41 1 3.5347 -1.8777 -7.7992 42 1 1.6627 -1.6142 -9.0869 43 1 0.1724 -0.0289 -7.3070 44 1 0.1310 -1.8071 -7.4838 45 1 0.0513 -0.8607 -4.5580 46 1 0.9172 0.6466 -4.9664 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592470786.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:21 Heat of formation + Delta-G solvation = -31.741161 kcal Electronic energy + Delta-G solvation = -21307.854976 eV Core-core repulsion = 18423.326653 eV Total energy + Delta-G solvation = -2884.528323 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.07415 -38.73409 -36.76745 -34.32373 -32.80013 -32.00843 -29.33764 -27.97375 -27.50840 -27.23736 -25.26898 -23.82710 -21.71427 -21.63784 -21.10846 -20.25592 -17.91193 -17.21582 -16.86821 -16.27694 -16.09183 -15.54972 -15.32500 -15.26548 -14.63369 -14.42699 -14.10322 -13.93669 -13.62493 -13.48362 -13.40344 -13.12123 -12.93776 -12.87786 -12.59005 -12.47891 -12.35646 -12.12911 -12.08802 -11.97237 -11.74033 -11.59408 -11.40595 -11.32361 -10.86791 -10.81804 -10.60141 -10.34183 -9.39236 -9.07926 -7.96779 -6.13910 1.42896 1.43481 1.50447 2.46030 3.23444 3.25060 3.28749 3.61020 3.78664 3.80832 4.03648 4.27192 4.36002 4.44689 4.50131 4.53382 4.55872 4.61550 4.62427 4.74560 4.75752 4.86695 4.87993 4.98579 5.03117 5.06103 5.10519 5.16731 5.20728 5.25668 5.28617 5.31158 5.43225 5.44209 5.51828 5.55277 5.69477 5.77276 5.82582 6.19396 6.29048 6.35772 6.48631 6.50500 6.67750 6.95811 7.53599 9.01124 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.043120 B = 0.003750 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.192189 B = 7465.478249 C = 7677.518337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.059 3.941 3 C -0.119 4.119 4 C -0.529 4.529 5 H 0.043 0.957 6 C 0.022 3.978 7 N -0.903 5.903 8 Si 0.944 3.056 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.275 1.275 12 C 0.093 3.907 13 N -0.684 5.684 14 C 0.089 3.911 15 H 0.058 0.942 16 C -0.141 4.141 17 C -0.093 4.093 18 C -0.097 4.097 19 H 0.075 0.925 20 C 0.053 3.947 21 N -0.694 5.694 22 C 0.055 3.945 23 C -0.110 4.110 24 H 0.070 0.930 25 C -0.078 4.078 26 H 0.048 0.952 27 H 0.034 0.966 28 H 0.008 0.992 29 H 0.015 0.985 30 H 0.033 0.967 31 H 0.055 0.945 32 H 0.257 0.743 33 H 0.008 0.992 34 H 0.044 0.956 35 H 0.338 0.662 36 H 0.060 0.940 37 H 0.048 0.952 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.053 0.947 42 H 0.346 0.654 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.543 -3.128 -19.608 20.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.058 3.942 3 C -0.177 4.177 4 C -0.567 4.567 5 H 0.062 0.938 6 C -0.177 4.177 7 N -0.542 5.542 8 Si 0.771 3.229 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.201 1.201 12 C -0.036 4.036 13 N -0.315 5.315 14 C -0.021 4.021 15 H 0.077 0.923 16 C -0.180 4.180 17 C -0.132 4.132 18 C -0.116 4.116 19 H 0.093 0.907 20 C -0.075 4.075 21 N -0.323 5.323 22 C -0.074 4.074 23 C -0.130 4.130 24 H 0.088 0.912 25 C -0.117 4.117 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.027 0.973 29 H 0.035 0.965 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.026 0.974 34 H 0.062 0.938 35 H 0.157 0.843 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.072 0.928 42 H 0.162 0.838 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.797 -2.628 -19.541 19.914 hybrid contribution 1.269 -1.097 1.640 2.346 sum 4.067 -3.725 -17.901 18.731 Atomic orbital electron populations 1.21460 0.97758 0.97637 0.99368 1.18148 0.92881 0.92382 0.90763 1.21647 0.97296 0.98814 0.99952 1.21417 1.31284 1.11968 0.92053 0.93834 1.25540 0.95309 0.95661 1.01161 1.69961 1.37320 1.23600 1.23341 0.85840 0.78640 0.78833 0.79617 1.21053 1.20143 1.20080 1.21796 0.94932 0.96822 0.90041 1.60671 1.63391 1.06300 1.01099 1.21644 0.92477 0.97936 0.90013 0.92317 1.22209 0.97111 1.00845 0.97850 1.21224 0.98331 1.00790 0.92845 1.21991 0.95437 1.00166 0.93988 0.90703 1.22611 0.90934 1.00244 0.93733 1.62593 1.02694 1.50820 1.16238 1.22291 0.94414 1.01655 0.88996 1.22022 0.96515 0.99657 0.94788 0.91152 1.21103 0.97837 1.00507 0.92256 0.93353 0.94689 0.97252 0.96550 0.94808 0.92609 0.93309 0.97404 0.93790 0.84282 0.92112 0.93328 0.90742 0.91613 0.89927 0.92827 0.83837 0.91209 0.91645 0.92060 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.14 8.09 71.98 0.58 -4.56 16 2 C 0.06 2.86 0.57 -52.93 -0.03 2.83 16 3 C -0.12 -5.63 7.92 71.98 0.57 -5.06 16 4 C -0.53 -28.80 8.01 25.60 0.21 -28.59 16 5 H 0.04 2.37 7.74 -2.91 -0.02 2.35 16 6 C 0.02 1.22 5.15 84.66 0.44 1.66 16 7 N -0.90 -50.77 9.35 21.45 0.20 -50.57 16 8 Si 0.94 43.55 29.54 68.60 2.03 45.57 16 9 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 C 0.09 3.86 4.36 86.30 0.38 4.24 16 13 N -0.68 -23.49 5.44 -490.92 -2.67 -26.16 16 14 C 0.09 2.46 2.46 45.04 0.11 2.57 16 15 H 0.06 1.73 7.76 -2.39 -0.02 1.71 16 16 C -0.14 -3.43 5.09 30.71 0.16 -3.27 16 17 C -0.09 -1.77 5.71 30.42 0.17 -1.60 16 18 C -0.10 -1.78 2.47 -10.33 -0.03 -1.81 16 19 H 0.07 1.54 8.07 -2.39 -0.02 1.53 16 20 C 0.05 0.84 7.22 85.91 0.62 1.46 16 21 N -0.69 -11.56 7.48 -505.35 -3.78 -15.33 16 22 C 0.06 0.97 7.30 85.75 0.63 1.60 16 23 C -0.11 -2.13 2.29 -10.62 -0.02 -2.16 16 24 H 0.07 1.39 7.94 -2.39 -0.02 1.37 16 25 C -0.08 -1.86 5.30 30.37 0.16 -1.70 16 26 H 0.05 2.62 6.07 -2.39 -0.01 2.61 16 27 H 0.03 1.57 7.60 -2.38 -0.02 1.55 16 28 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.03 1.39 6.57 -2.39 -0.02 1.38 16 31 H 0.06 2.95 6.07 -2.39 -0.01 2.94 16 32 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 33 H 0.01 0.33 7.46 -2.39 -0.02 0.31 16 34 H 0.04 1.89 8.04 -2.39 -0.02 1.87 16 35 H 0.34 11.50 6.39 -89.70 -0.57 10.93 16 36 H 0.06 1.48 7.98 -2.39 -0.02 1.46 16 37 H 0.05 1.32 7.50 -2.39 -0.02 1.30 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.07 1.22 7.99 -2.38 -0.02 1.20 16 40 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.35 4.51 8.93 -89.69 -0.80 3.71 16 43 H 0.07 1.34 8.08 -2.39 -0.02 1.32 16 44 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 45 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.06 1.52 8.07 -2.38 -0.02 1.50 16 Total: -1.00 -56.90 338.64 -0.72 -57.62 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: -0.43 Total: 23.26 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: 3.94 Total: -34.40 kcal Atomic # 7 Polarization: -85.81 SS G_CDS: -6.25 Total: -92.06 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -56.90 -0.72 -57.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592470786.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.877 kcal (2) G-P(sol) polarization free energy of solvation -56.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds