Wall clock time and date at job start Mon Mar 30 2020 01:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47143 * 2 1 4 4 C 1.50700 * 109.47335 * 240.00241 * 2 1 3 5 5 H 1.08002 * 119.99771 * 240.00450 * 4 2 1 6 6 C 1.37878 * 119.99927 * 59.99908 * 4 2 1 7 7 N 1.31508 * 120.00100 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99600 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47572 * 59.99903 * 8 6 4 10 10 H 1.48508 * 109.46695 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47055 * 299.99633 * 8 6 4 12 12 C 1.53003 * 109.47424 * 120.00012 * 2 1 3 13 13 N 1.46896 * 109.46667 * 300.00290 * 12 2 1 14 14 C 1.46904 * 110.99714 * 179.97438 * 13 12 2 15 15 H 1.08995 * 109.72863 * 35.65336 * 14 13 12 16 16 C 1.53328 * 109.73707 * 274.99889 * 14 13 12 17 17 C 1.52600 * 108.41122 * 176.24885 * 16 14 13 18 18 C 1.53007 * 111.03760 * 62.35393 * 17 16 14 19 19 H 1.08996 * 112.05938 * 73.87203 * 18 17 16 20 20 C 1.55336 * 106.43686 * 197.04646 * 18 17 16 21 21 N 1.47589 * 106.93080 * 92.15285 * 20 18 17 22 22 C 1.48243 * 108.56227 * 1.01042 * 21 20 18 23 23 C 1.53911 * 104.02823 * 23.33044 * 22 21 20 24 24 H 1.08995 * 108.63750 * 77.03132 * 23 22 21 25 25 C 1.51226 * 112.52619 * 199.05274 * 23 22 21 26 26 H 1.08999 * 109.47154 * 300.00208 * 1 2 3 27 27 H 1.09004 * 109.47003 * 59.99745 * 1 2 3 28 28 H 1.09005 * 109.47096 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47537 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47379 * 300.00025 * 3 2 1 31 31 H 1.08999 * 109.47266 * 59.99860 * 3 2 1 32 32 H 0.96997 * 119.99984 * 180.02562 * 7 6 4 33 33 H 1.08993 * 109.47326 * 180.02562 * 12 2 1 34 34 H 1.08998 * 109.46482 * 59.99804 * 12 2 1 35 35 H 1.00899 * 111.00686 * 56.04658 * 13 12 2 36 36 H 1.08996 * 109.67349 * 56.52380 * 16 14 13 37 37 H 1.09000 * 109.67601 * 295.97791 * 16 14 13 38 38 H 1.09000 * 109.16460 * 301.95170 * 17 16 14 39 39 H 1.08995 * 109.16151 * 182.75684 * 17 16 14 40 40 H 1.09006 * 109.96561 * 332.78751 * 20 18 17 41 41 H 1.09000 * 109.97092 * 211.52561 * 20 18 17 42 42 H 1.00901 * 110.99858 * 123.27054 * 21 20 18 43 43 H 1.08999 * 110.51545 * 141.97099 * 22 21 20 44 44 H 1.09000 * 110.51534 * 264.69724 * 22 21 20 45 45 H 1.08999 * 109.03058 * 304.66700 * 25 23 22 46 46 H 1.09003 * 108.46722 * 186.07735 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3215 -1.1202 -4.0079 9 1 1.8261 -2.5201 -4.0078 10 1 1.8271 -0.4197 -5.2204 11 1 3.8065 -1.1207 -4.0081 12 6 2.0401 -0.7213 1.2492 13 7 1.5503 -0.0288 2.4486 14 6 2.0209 -0.6952 3.6703 15 1 3.0274 -1.0831 3.5134 16 6 1.0730 -1.8452 4.0307 17 6 1.6393 -2.5736 5.2462 18 6 1.7097 -1.6444 6.4598 19 1 0.7254 -1.4546 6.8877 20 6 2.6745 -2.3181 7.4738 21 7 4.0235 -1.7836 7.2037 22 6 3.9294 -0.8025 6.0964 23 6 2.4614 -0.3414 6.1302 24 1 2.3362 0.3627 6.9527 25 6 2.0251 0.2985 4.8313 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.7090 1.1615 -3.4844 33 1 3.1300 -0.7208 1.2495 34 1 1.6767 -1.7489 1.2492 35 1 0.5438 0.0413 2.4402 36 1 0.9982 -2.5360 3.1909 37 1 0.0865 -1.4470 4.2681 38 1 2.6411 -2.9340 5.0128 39 1 1.0003 -3.4242 5.4833 40 1 2.6673 -3.3989 7.3328 41 1 2.3742 -2.0732 8.4925 42 1 4.4164 -1.3592 8.0305 43 1 4.5985 0.0394 6.2742 44 1 4.1583 -1.2791 5.1432 45 1 2.7022 1.1192 4.5944 46 1 1.0184 0.6954 4.9630 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592470787.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:24 Heat of formation + Delta-G solvation = -17.593476 kcal Electronic energy + Delta-G solvation = -21489.144461 eV Core-core repulsion = 18605.229628 eV Total energy + Delta-G solvation = -2883.914833 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.23748 -37.14836 -35.18954 -32.65071 -31.62829 -30.59555 -28.53066 -26.77045 -25.53225 -25.16950 -23.65454 -22.60046 -21.95206 -20.74752 -18.90174 -18.22667 -17.00951 -15.97591 -15.42073 -14.83817 -14.45593 -14.27420 -14.16666 -13.67610 -13.38982 -13.36592 -12.84205 -12.68048 -12.52336 -12.11629 -11.89827 -11.74249 -11.54974 -11.16129 -11.07527 -11.02354 -10.91038 -10.66903 -10.60953 -10.44127 -10.24497 -10.09819 -10.02458 -9.97255 -9.34978 -9.00523 -8.60491 -8.59736 -8.25944 -7.59315 -5.88334 -3.98614 3.34601 3.39222 3.42091 4.05681 4.37963 4.47120 4.55479 4.66724 4.93199 5.03198 5.10573 5.22825 5.37011 5.39056 5.40384 5.43827 5.56477 5.61656 5.74418 5.78552 5.93310 5.95485 6.07965 6.11957 6.20185 6.26151 6.37430 6.42069 6.49953 6.57698 6.67091 6.76276 6.93552 7.11317 7.19256 7.20485 7.41728 7.51676 7.78503 7.79939 7.87981 8.04704 8.24837 8.38215 8.59347 9.02753 9.66203 11.12113 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.036567 B = 0.003980 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.531073 B = 7033.071072 C = 7146.940603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.068 3.932 3 C -0.118 4.118 4 C -0.506 4.506 5 H 0.051 0.949 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.888 3.112 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.077 3.923 13 N -0.682 5.682 14 C 0.090 3.910 15 H 0.074 0.926 16 C -0.150 4.150 17 C -0.105 4.105 18 C -0.101 4.101 19 H 0.082 0.918 20 C 0.047 3.953 21 N -0.687 5.687 22 C 0.050 3.950 23 C -0.109 4.109 24 H 0.065 0.935 25 C -0.093 4.093 26 H 0.010 0.990 27 H 0.082 0.918 28 H 0.018 0.982 29 H 0.017 0.983 30 H 0.073 0.927 31 H 0.019 0.981 32 H 0.258 0.742 33 H 0.054 0.946 34 H 0.012 0.988 35 H 0.337 0.663 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.046 0.954 42 H 0.335 0.665 43 H 0.066 0.934 44 H 0.082 0.918 45 H 0.069 0.931 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.074 -2.946 18.394 18.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.067 3.933 3 C -0.176 4.176 4 C -0.545 4.545 5 H 0.069 0.931 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.716 3.284 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.204 1.204 12 C -0.051 4.051 13 N -0.312 5.312 14 C -0.021 4.021 15 H 0.092 0.908 16 C -0.189 4.189 17 C -0.143 4.143 18 C -0.120 4.120 19 H 0.100 0.900 20 C -0.082 4.082 21 N -0.315 5.315 22 C -0.079 4.079 23 C -0.129 4.129 24 H 0.084 0.916 25 C -0.132 4.132 26 H 0.029 0.971 27 H 0.101 0.899 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.092 0.908 31 H 0.039 0.961 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.031 0.969 35 H 0.156 0.844 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.150 0.850 43 H 0.084 0.916 44 H 0.100 0.900 45 H 0.087 0.913 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.740 -2.914 17.828 18.148 hybrid contribution -0.694 -0.611 -0.364 0.993 sum 1.046 -3.525 17.464 17.847 Atomic orbital electron populations 1.21823 0.98576 0.98280 1.00208 1.18094 0.92057 0.93055 0.90047 1.21630 0.97727 0.98223 1.00004 1.21081 1.31121 1.11777 0.90533 0.93110 1.24878 0.95073 0.94942 0.98647 1.69822 1.36865 1.22756 1.22960 0.86733 0.79204 0.79757 0.82687 1.20495 1.21383 1.20404 1.22141 0.98679 0.94449 0.89839 1.60651 1.16281 1.53188 1.01057 1.21529 0.98249 0.91753 0.90540 0.90806 1.22289 0.99691 0.99127 0.97820 1.21440 1.01508 0.97283 0.94043 1.22342 0.98413 0.94987 0.96270 0.89978 1.22990 0.87688 1.00102 0.97413 1.61817 1.21994 1.37440 1.10269 1.22892 0.95256 0.93815 0.95966 1.21932 0.96054 0.96475 0.98457 0.91643 1.20895 1.01660 0.98392 0.92206 0.97097 0.89903 0.96303 0.96375 0.90823 0.96148 0.93178 0.92741 0.96928 0.84420 0.91855 0.92141 0.91489 0.92534 0.90712 0.93543 0.85037 0.91585 0.89968 0.91259 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 7.92 37.16 0.29 -2.81 16 2 C 0.07 1.65 0.57 -155.66 -0.09 1.56 16 3 C -0.12 -2.90 8.09 37.16 0.30 -2.60 16 4 C -0.51 -13.72 8.01 -34.44 -0.28 -14.00 16 5 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 6 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 7 N -0.89 -24.64 9.35 55.43 0.52 -24.12 16 8 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.08 1.61 4.40 -3.82 -0.02 1.60 16 13 N -0.68 -11.99 5.48 -106.64 -0.58 -12.57 16 14 C 0.09 1.29 2.31 -67.63 -0.16 1.14 16 15 H 0.07 1.13 6.52 -51.93 -0.34 0.80 16 16 C -0.15 -1.97 5.21 -26.77 -0.14 -2.11 16 17 C -0.10 -1.18 4.63 -26.93 -0.12 -1.30 16 18 C -0.10 -1.01 3.56 -88.86 -0.32 -1.32 16 19 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 20 C 0.05 0.44 6.89 -2.21 -0.02 0.42 16 21 N -0.69 -6.82 7.41 -110.35 -0.82 -7.64 16 22 C 0.05 0.52 6.53 -2.61 -0.02 0.50 16 23 C -0.11 -1.13 2.88 -90.52 -0.26 -1.39 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 C -0.09 -1.15 4.96 -27.71 -0.14 -1.29 16 26 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 27 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 1.98 6.07 -51.93 -0.32 1.66 16 31 H 0.02 0.45 7.60 -51.93 -0.39 0.06 16 32 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.05 1.18 8.06 -51.93 -0.42 0.76 16 34 H 0.01 0.26 7.42 -51.93 -0.39 -0.12 16 35 H 0.34 5.93 6.53 -39.29 -0.26 5.67 16 36 H 0.06 0.92 7.42 -51.93 -0.39 0.54 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.83 7.23 -51.93 -0.38 0.45 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.72 7.73 -51.93 -0.40 0.32 16 41 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.33 2.73 8.91 -39.29 -0.35 2.38 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.08 1.01 6.22 -51.93 -0.32 0.68 16 45 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 334.04 15.07 5.03 5.03 Total: -1.00 -27.06 334.04 -10.29 -37.34 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -8.37 Total: 5.62 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: -1.05 Total: -19.90 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: -0.88 Total: -44.33 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.06 -10.29 -37.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592470787.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.748 kcal (2) G-P(sol) polarization free energy of solvation -27.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds