Wall clock time and date at job start Mon Mar 30 2020 01:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47143 * 2 1 4 4 C 1.50700 * 109.47335 * 240.00241 * 2 1 3 5 5 H 1.08002 * 119.99771 * 240.00450 * 4 2 1 6 6 C 1.37878 * 119.99927 * 59.99908 * 4 2 1 7 7 N 1.31508 * 120.00100 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99600 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47572 * 59.99903 * 8 6 4 10 10 H 1.48508 * 109.46695 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47055 * 299.99633 * 8 6 4 12 12 C 1.53003 * 109.47424 * 120.00012 * 2 1 3 13 13 N 1.46896 * 109.46667 * 300.00290 * 12 2 1 14 14 C 1.46904 * 110.99714 * 179.97438 * 13 12 2 15 15 H 1.08995 * 109.72863 * 35.65336 * 14 13 12 16 16 C 1.53328 * 109.73707 * 274.99889 * 14 13 12 17 17 C 1.52600 * 108.41122 * 176.24885 * 16 14 13 18 18 C 1.53007 * 111.03760 * 62.35393 * 17 16 14 19 19 H 1.08996 * 112.05938 * 73.87203 * 18 17 16 20 20 C 1.55336 * 106.43686 * 197.04646 * 18 17 16 21 21 N 1.47589 * 106.93080 * 92.15285 * 20 18 17 22 22 C 1.48243 * 108.56227 * 1.01042 * 21 20 18 23 23 C 1.53911 * 104.02823 * 23.33044 * 22 21 20 24 24 H 1.08995 * 108.63750 * 77.03132 * 23 22 21 25 25 C 1.51226 * 112.52619 * 199.05274 * 23 22 21 26 26 H 1.08999 * 109.47154 * 300.00208 * 1 2 3 27 27 H 1.09004 * 109.47003 * 59.99745 * 1 2 3 28 28 H 1.09005 * 109.47096 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47537 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47379 * 300.00025 * 3 2 1 31 31 H 1.08999 * 109.47266 * 59.99860 * 3 2 1 32 32 H 0.96997 * 119.99984 * 180.02562 * 7 6 4 33 33 H 1.08993 * 109.47326 * 180.02562 * 12 2 1 34 34 H 1.08998 * 109.46482 * 59.99804 * 12 2 1 35 35 H 1.00899 * 111.00686 * 56.04658 * 13 12 2 36 36 H 1.08996 * 109.67349 * 56.52380 * 16 14 13 37 37 H 1.09000 * 109.67601 * 295.97791 * 16 14 13 38 38 H 1.09000 * 109.16460 * 301.95170 * 17 16 14 39 39 H 1.08995 * 109.16151 * 182.75684 * 17 16 14 40 40 H 1.09006 * 109.96561 * 332.78751 * 20 18 17 41 41 H 1.09000 * 109.97092 * 211.52561 * 20 18 17 42 42 H 1.00901 * 110.99858 * 123.27054 * 21 20 18 43 43 H 1.08999 * 110.51545 * 141.97099 * 22 21 20 44 44 H 1.09000 * 110.51534 * 264.69724 * 22 21 20 45 45 H 1.08999 * 109.03058 * 304.66700 * 25 23 22 46 46 H 1.09003 * 108.46722 * 186.07735 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3215 -1.1202 -4.0079 9 1 1.8261 -2.5201 -4.0078 10 1 1.8271 -0.4197 -5.2204 11 1 3.8065 -1.1207 -4.0081 12 6 2.0401 -0.7213 1.2492 13 7 1.5503 -0.0288 2.4486 14 6 2.0209 -0.6952 3.6703 15 1 3.0274 -1.0831 3.5134 16 6 1.0730 -1.8452 4.0307 17 6 1.6393 -2.5736 5.2462 18 6 1.7097 -1.6444 6.4598 19 1 0.7254 -1.4546 6.8877 20 6 2.6745 -2.3181 7.4738 21 7 4.0235 -1.7836 7.2037 22 6 3.9294 -0.8025 6.0964 23 6 2.4614 -0.3414 6.1302 24 1 2.3362 0.3627 6.9527 25 6 2.0251 0.2985 4.8313 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.7090 1.1615 -3.4844 33 1 3.1300 -0.7208 1.2495 34 1 1.6767 -1.7489 1.2492 35 1 0.5438 0.0413 2.4402 36 1 0.9982 -2.5360 3.1909 37 1 0.0865 -1.4470 4.2681 38 1 2.6411 -2.9340 5.0128 39 1 1.0003 -3.4242 5.4833 40 1 2.6673 -3.3989 7.3328 41 1 2.3742 -2.0732 8.4925 42 1 4.4164 -1.3592 8.0305 43 1 4.5985 0.0394 6.2742 44 1 4.1583 -1.2791 5.1432 45 1 2.7022 1.1192 4.5944 46 1 1.0184 0.6954 4.9630 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592470787.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:24 Heat of formation + Delta-G solvation = -34.175624 kcal Electronic energy + Delta-G solvation = -21489.863517 eV Core-core repulsion = 18605.229628 eV Total energy + Delta-G solvation = -2884.633889 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.15513 -38.69014 -36.62202 -34.15017 -32.76803 -32.06404 -29.59033 -27.82308 -27.49724 -27.22198 -25.24375 -23.58022 -22.95055 -21.68072 -20.44396 -19.53209 -18.06526 -17.67253 -16.85715 -16.39663 -15.90029 -15.42738 -15.29576 -14.83596 -14.69477 -14.46448 -14.27911 -14.00890 -13.82731 -13.49737 -13.20475 -13.07587 -12.94544 -12.74151 -12.55746 -12.48797 -12.43985 -12.13668 -12.07804 -12.02747 -11.85313 -11.41092 -11.34255 -11.15493 -11.04299 -10.76282 -10.59384 -10.33374 -9.35790 -9.04933 -7.96074 -6.12956 1.43271 1.43978 1.50892 2.46713 3.24791 3.25796 3.41876 3.66968 3.70368 3.90607 4.11592 4.18354 4.30203 4.41424 4.53004 4.55276 4.57665 4.61871 4.68467 4.73057 4.82070 4.88331 4.91643 4.98854 5.03094 5.06849 5.13236 5.17854 5.20931 5.24078 5.29514 5.34575 5.44158 5.46417 5.54198 5.56013 5.70286 5.78082 5.90331 6.20771 6.30400 6.36871 6.51463 6.54328 6.69977 6.96458 7.54433 9.01825 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.036567 B = 0.003980 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.531073 B = 7033.071072 C = 7146.940603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.058 3.942 3 C -0.104 4.104 4 C -0.528 4.528 5 H 0.042 0.958 6 C 0.023 3.977 7 N -0.903 5.903 8 Si 0.943 3.057 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.276 1.276 12 C 0.095 3.905 13 N -0.682 5.682 14 C 0.090 3.910 15 H 0.061 0.939 16 C -0.144 4.144 17 C -0.099 4.099 18 C -0.098 4.098 19 H 0.096 0.904 20 C 0.050 3.950 21 N -0.697 5.697 22 C 0.051 3.949 23 C -0.104 4.104 24 H 0.082 0.918 25 C -0.085 4.085 26 H 0.034 0.966 27 H 0.055 0.945 28 H 0.015 0.985 29 H 0.008 0.992 30 H 0.048 0.952 31 H 0.035 0.965 32 H 0.257 0.743 33 H 0.042 0.958 34 H 0.006 0.994 35 H 0.338 0.662 36 H 0.043 0.957 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.346 0.654 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.856 -3.190 20.262 20.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.058 3.942 3 C -0.162 4.162 4 C -0.567 4.567 5 H 0.060 0.940 6 C -0.176 4.176 7 N -0.542 5.542 8 Si 0.770 3.230 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.202 1.202 12 C -0.034 4.034 13 N -0.312 5.312 14 C -0.020 4.020 15 H 0.079 0.921 16 C -0.183 4.183 17 C -0.137 4.137 18 C -0.117 4.117 19 H 0.114 0.886 20 C -0.079 4.079 21 N -0.326 5.326 22 C -0.078 4.078 23 C -0.124 4.124 24 H 0.100 0.900 25 C -0.123 4.123 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.034 0.966 29 H 0.027 0.973 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.024 0.976 35 H 0.157 0.843 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.163 0.837 43 H 0.093 0.907 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.527 -3.161 19.718 20.028 hybrid contribution -0.607 -0.537 -0.923 1.228 sum 0.920 -3.698 18.795 19.177 Atomic orbital electron populations 1.21641 0.98085 0.97937 0.99982 1.18159 0.92467 0.92895 0.90720 1.21454 0.96926 0.98386 0.99388 1.21406 1.31304 1.11884 0.92071 0.93958 1.25517 0.95331 0.95630 1.01091 1.69952 1.37368 1.23526 1.23326 0.85855 0.78647 0.78826 0.79689 1.20130 1.20979 1.20202 1.21760 0.97747 0.93876 0.90053 1.60592 1.16294 1.53300 1.01063 1.21565 0.97729 0.92789 0.89893 0.92116 1.22192 0.99760 0.98286 0.98066 1.21383 1.00699 0.97807 0.93804 1.22352 0.99299 0.94304 0.95756 0.88576 1.22971 0.87046 0.99737 0.98184 1.61744 1.22660 1.37491 1.10703 1.22799 0.95663 0.94034 0.95344 1.21877 0.95891 0.96957 0.97653 0.89997 1.20796 1.01768 0.97563 0.92215 0.94716 0.92598 0.96609 0.97290 0.93330 0.94630 0.93309 0.93925 0.97592 0.84251 0.93784 0.91363 0.92905 0.91435 0.91157 0.91562 0.83741 0.90685 0.92234 0.92090 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.61 7.92 71.98 0.57 -5.04 16 2 C 0.06 2.84 0.57 -52.93 -0.03 2.81 16 3 C -0.10 -5.12 8.09 71.98 0.58 -4.53 16 4 C -0.53 -28.96 8.01 25.60 0.21 -28.75 16 5 H 0.04 2.33 7.74 -2.91 -0.02 2.31 16 6 C 0.02 1.28 5.15 84.66 0.44 1.72 16 7 N -0.90 -50.78 9.35 21.45 0.20 -50.58 16 8 Si 0.94 43.80 29.54 68.60 2.03 45.82 16 9 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 C 0.09 3.98 4.40 86.30 0.38 4.36 16 13 N -0.68 -23.56 5.48 -491.31 -2.69 -26.25 16 14 C 0.09 2.53 2.31 44.97 0.10 2.63 16 15 H 0.06 1.88 6.52 -2.39 -0.02 1.86 16 16 C -0.14 -3.62 5.21 30.57 0.16 -3.46 16 17 C -0.10 -2.07 4.63 30.46 0.14 -1.92 16 18 C -0.10 -1.69 3.56 -9.65 -0.03 -1.73 16 19 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 20 C 0.05 0.79 6.89 86.97 0.60 1.38 16 21 N -0.70 -12.35 7.41 -503.05 -3.73 -16.08 16 22 C 0.05 0.99 6.53 86.35 0.56 1.55 16 23 C -0.10 -1.91 2.88 -10.73 -0.03 -1.94 16 24 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 25 C -0.08 -1.95 4.96 29.96 0.15 -1.80 16 26 H 0.03 1.43 6.57 -2.39 -0.02 1.41 16 27 H 0.06 2.96 6.07 -2.39 -0.01 2.94 16 28 H 0.01 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 30 H 0.05 2.63 6.07 -2.39 -0.01 2.62 16 31 H 0.03 1.59 7.60 -2.39 -0.02 1.57 16 32 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 33 H 0.04 1.87 8.06 -2.39 -0.02 1.85 16 34 H 0.01 0.25 7.42 -2.39 -0.02 0.24 16 35 H 0.34 11.49 6.53 -89.69 -0.59 10.90 16 36 H 0.04 1.27 7.42 -2.39 -0.02 1.25 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.05 1.26 7.23 -2.39 -0.02 1.24 16 39 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.07 1.19 7.73 -2.38 -0.02 1.17 16 41 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.35 4.77 8.91 -89.69 -0.80 3.97 16 43 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.06 1.44 6.22 -2.39 -0.01 1.42 16 45 H 0.06 1.51 8.14 -2.39 -0.02 1.50 16 46 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -57.46 334.04 -0.83 -58.30 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: -0.44 Total: 23.50 kcal Atomic # 6 Polarization: -38.51 SS G_CDS: 3.79 Total: -34.71 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -6.22 Total: -92.91 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -57.46 -0.83 -58.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592470787.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.120 kcal (2) G-P(sol) polarization free energy of solvation -57.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds