Wall clock time and date at job start Mon Mar 30 2020 00:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46879 * 2 1 4 4 N 1.46501 * 109.46726 * 180.02562 * 3 2 1 5 5 C 1.35498 * 126.98162 * 270.15619 * 4 3 2 6 6 C 1.50699 * 126.34396 * 359.97438 * 5 4 3 7 7 N 1.30515 * 107.30639 * 180.23079 * 5 4 3 8 8 N 1.28598 * 109.67399 * 359.76632 * 7 5 4 9 9 C 1.30522 * 109.67471 * 0.02562 * 8 7 5 10 10 C 1.50701 * 126.34819 * 179.97438 * 9 8 7 11 11 N 1.46892 * 109.47029 * 90.02157 * 10 9 8 12 12 C 1.46906 * 110.99788 * 184.88201 * 11 10 9 13 13 H 1.08999 * 109.46909 * 12.77155 * 12 11 10 14 14 C 1.50709 * 109.46975 * 132.76940 * 12 11 10 15 15 H 1.07995 * 120.00023 * 3.86939 * 14 12 11 16 16 C 1.37874 * 119.99654 * 183.87367 * 14 12 11 17 17 N 1.31518 * 119.99480 * 197.93998 * 16 14 12 18 18 Si 1.86798 * 120.00174 * 17.93797 * 16 14 12 19 19 H 1.48500 * 109.46937 * 86.15702 * 18 16 14 20 20 H 1.48500 * 109.47047 * 206.15440 * 18 16 14 21 21 H 1.48501 * 109.47235 * 326.15519 * 18 16 14 22 22 C 1.53001 * 109.47071 * 252.76621 * 12 11 10 23 23 C 1.52998 * 109.46746 * 66.05579 * 22 12 11 24 24 H 1.09000 * 109.47293 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46952 * 300.00087 * 1 2 3 26 26 H 1.09002 * 109.47474 * 59.99630 * 1 2 3 27 27 H 1.08995 * 109.46684 * 239.99813 * 2 1 3 28 28 H 1.09000 * 109.47120 * 119.99485 * 2 1 3 29 29 H 1.08993 * 109.47114 * 60.00479 * 3 2 1 30 30 H 1.09000 * 109.46824 * 299.99666 * 3 2 1 31 31 H 1.09003 * 109.47485 * 270.25047 * 6 5 4 32 32 H 1.09000 * 109.47141 * 30.25550 * 6 5 4 33 33 H 1.08997 * 109.46548 * 150.25161 * 6 5 4 34 34 H 1.09007 * 109.46949 * 330.02145 * 10 9 8 35 35 H 1.08997 * 109.46679 * 210.02173 * 10 9 8 36 36 H 1.00902 * 111.00589 * 60.93231 * 11 10 9 37 37 H 0.97000 * 119.99406 * 179.97438 * 17 16 14 38 38 H 1.08997 * 109.47328 * 306.05730 * 22 12 11 39 39 H 1.09002 * 109.46672 * 186.05358 * 22 12 11 40 40 H 1.08998 * 109.47222 * 295.26245 * 23 22 12 41 41 H 1.09004 * 109.47171 * 175.26170 * 23 22 12 42 42 H 1.09006 * 109.47406 * 55.26771 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.3205 1.4394 1.0814 6 6 3.8887 1.4358 2.5252 7 7 5.5493 1.4456 0.6415 8 7 5.5487 1.4475 -0.6445 9 6 4.3195 1.4431 -1.0834 10 6 3.8865 1.4440 -2.5269 11 7 3.7512 0.0593 -2.9983 12 6 3.4426 0.0199 -4.4340 13 1 3.6064 1.0062 -4.8681 14 6 4.3393 -0.9831 -5.1132 15 1 5.0221 -1.5807 -4.5275 16 6 4.2880 -1.1376 -6.4823 17 7 4.7840 -2.2201 -7.0408 18 14 3.5138 0.1903 -7.5438 19 1 4.5317 1.2224 -7.8659 20 1 3.0070 -0.4145 -8.8018 21 1 2.3875 0.8185 -6.8076 22 6 1.9810 -0.3876 -4.6304 23 6 1.0675 0.7059 -4.0732 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8932 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.7807 2.4626 2.8748 32 1 2.9339 0.9181 2.6176 33 1 4.6393 0.9240 3.1275 34 1 4.6326 1.9618 -3.1297 35 1 2.9277 1.9542 -2.6182 36 1 3.0539 -0.4379 -2.4648 37 1 4.7476 -2.3290 -8.0040 38 1 1.7907 -1.3230 -4.1042 39 1 1.7809 -0.5215 -5.6935 40 1 1.2075 0.7818 -2.9950 41 1 0.0285 0.4558 -4.2880 42 1 1.3155 1.6593 -4.5399 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594006470.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:58 Heat of formation + Delta-G solvation = 67.772078 kcal Electronic energy + Delta-G solvation = -21205.114628 eV Core-core repulsion = 18221.361180 eV Total energy + Delta-G solvation = -2983.753449 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.96140 -37.13164 -36.25033 -33.26832 -32.81474 -32.05183 -31.08440 -28.48586 -27.13295 -26.81105 -24.67748 -22.51843 -22.39535 -21.10619 -20.30580 -20.02836 -17.06640 -16.67389 -16.19048 -15.68569 -15.14843 -14.97084 -14.16285 -14.06326 -13.88812 -13.74030 -13.28006 -12.94409 -12.85566 -12.73116 -12.52740 -12.38342 -12.12352 -11.88475 -11.82165 -11.61729 -11.20637 -11.15178 -10.95927 -10.77335 -10.50662 -10.07775 -10.03183 -10.01966 -9.61626 -9.38514 -8.80189 -8.38032 -7.49137 -6.06519 -3.97113 1.91558 2.50611 3.11053 3.26614 3.34573 3.38365 4.28071 4.34745 4.42500 4.43383 4.54069 4.79375 4.84060 4.94973 5.09454 5.10430 5.17205 5.24957 5.26316 5.37067 5.54389 5.59330 5.64525 5.70807 5.74253 5.80717 5.85790 5.94578 6.01961 6.12316 6.31995 6.37482 6.46404 6.61305 6.73487 6.99673 7.07490 7.69221 7.82420 8.13986 8.68915 9.01479 9.14759 9.59902 11.06997 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.022616 B = 0.005669 C = 0.004948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.758806 B = 4937.788886 C = 5656.924435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.143 4.143 3 C 0.104 3.896 4 N -0.472 5.472 5 C 0.159 3.841 6 C -0.062 4.062 7 N -0.297 5.297 8 N -0.278 5.278 9 C 0.196 3.804 10 C 0.143 3.857 11 N -0.660 5.660 12 C 0.196 3.804 13 H 0.023 0.977 14 C -0.501 4.501 15 H 0.082 0.918 16 C 0.074 3.926 17 N -0.890 5.890 18 Si 0.857 3.143 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.258 1.258 22 C -0.150 4.150 23 C -0.156 4.156 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.037 0.963 36 H 0.324 0.676 37 H 0.263 0.737 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.040 0.960 41 H 0.044 0.956 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.453 8.568 15.953 21.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C -0.020 4.020 4 N -0.164 5.164 5 C -0.108 4.108 6 C -0.121 4.121 7 N -0.138 5.138 8 N -0.117 5.117 9 C -0.071 4.071 10 C 0.011 3.989 11 N -0.291 5.291 12 C 0.088 3.912 13 H 0.041 0.959 14 C -0.539 4.539 15 H 0.100 0.900 16 C -0.128 4.128 17 N -0.528 5.528 18 Si 0.684 3.316 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.182 1.182 22 C -0.189 4.189 23 C -0.213 4.213 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.122 0.878 35 H 0.055 0.945 36 H 0.142 0.858 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.219 8.400 15.667 20.504 hybrid contribution -2.740 0.892 -0.785 2.987 sum -12.959 9.291 14.881 21.811 Atomic orbital electron populations 1.21692 0.93998 1.02830 1.02102 1.21964 0.97033 0.95087 1.04047 1.22010 0.75900 0.99284 1.04777 1.46193 1.08418 1.55241 1.06592 1.24702 0.87789 1.06022 0.92264 1.20143 1.02264 1.03481 0.86262 1.74255 1.17061 1.18726 1.03776 1.74301 1.17189 1.17872 1.02337 1.24967 0.87044 1.03113 0.92021 1.20414 0.99741 0.93690 0.85005 1.60599 1.53058 1.09668 1.05810 1.19594 0.91095 0.97020 0.83462 0.95886 1.20948 1.21369 1.20069 0.91554 0.89995 1.24887 0.95259 0.94816 0.97847 1.69994 1.46909 1.24860 1.10993 0.87336 0.80236 0.83644 0.80430 1.20447 1.21526 1.18210 1.22592 0.97348 0.97266 1.01679 1.21970 0.99616 1.00131 0.99579 0.91632 0.92484 0.92112 0.90410 0.91002 0.88734 0.88687 0.90102 0.90791 0.88891 0.87761 0.94524 0.85790 0.92744 0.92250 0.91549 0.94140 0.93644 0.93445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.14 -1.26 6.26 -26.73 -0.17 -1.43 16 3 C 0.10 0.93 5.68 -4.04 -0.02 0.91 16 4 N -0.47 -6.31 2.75 -110.66 -0.30 -6.62 16 5 C 0.16 2.21 8.03 -154.99 -1.24 0.97 16 6 C -0.06 -0.52 10.06 36.00 0.36 -0.16 16 7 N -0.30 -5.46 12.21 32.80 0.40 -5.06 16 8 N -0.28 -5.62 12.21 32.80 0.40 -5.21 16 9 C 0.20 3.36 7.59 -154.98 -1.18 2.18 16 10 C 0.14 2.45 5.52 -4.98 -0.03 2.42 16 11 N -0.66 -13.08 6.04 -109.22 -0.66 -13.74 16 12 C 0.20 4.37 1.73 -68.86 -0.12 4.25 16 13 H 0.02 0.53 6.23 -51.93 -0.32 0.20 16 14 C -0.50 -13.94 9.26 -34.44 -0.32 -14.26 16 15 H 0.08 2.58 8.06 -52.49 -0.42 2.16 16 16 C 0.07 2.09 5.28 -17.82 -0.09 2.00 16 17 N -0.89 -27.01 13.96 55.43 0.77 -26.24 16 18 Si 0.86 20.56 25.85 -169.99 -4.39 16.17 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.26 -5.65 5.62 56.52 0.32 -5.34 16 22 C -0.15 -2.94 4.54 -26.73 -0.12 -3.06 16 23 C -0.16 -2.35 9.04 37.16 0.34 -2.01 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.88 6.47 -51.93 -0.34 0.54 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.60 7.82 -51.93 -0.41 0.19 16 30 H 0.09 0.81 7.19 -51.93 -0.37 0.44 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.46 7.87 -51.93 -0.41 0.05 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.10 1.91 8.02 -51.93 -0.42 1.49 16 35 H 0.04 0.53 5.77 -51.93 -0.30 0.23 16 36 H 0.32 5.85 6.11 -39.29 -0.24 5.61 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.06 1.16 8.04 -51.93 -0.42 0.74 16 39 H 0.07 1.42 5.02 -51.93 -0.26 1.16 16 40 H 0.04 0.52 6.70 -51.93 -0.35 0.17 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 332.51 15.07 5.01 5.01 Total: -1.00 -33.76 332.51 -7.85 -41.62 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -6.85 Total: 2.90 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -2.23 Total: -8.83 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 0.61 Total: -56.86 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.39 Total: 16.17 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.76 -7.85 -41.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594006470.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.388 kcal (2) G-P(sol) polarization free energy of solvation -33.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds