Wall clock time and date at job start Mon Mar 30 2020 00:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46879 * 2 1 4 4 N 1.46501 * 109.46726 * 180.02562 * 3 2 1 5 5 C 1.35498 * 126.98162 * 270.15619 * 4 3 2 6 6 C 1.50699 * 126.34396 * 359.97438 * 5 4 3 7 7 N 1.30515 * 107.30639 * 180.23079 * 5 4 3 8 8 N 1.28598 * 109.67399 * 359.76632 * 7 5 4 9 9 C 1.30522 * 109.67471 * 0.02562 * 8 7 5 10 10 C 1.50701 * 126.34819 * 179.97438 * 9 8 7 11 11 N 1.46892 * 109.47029 * 90.02157 * 10 9 8 12 12 C 1.46906 * 110.99788 * 184.88201 * 11 10 9 13 13 H 1.08999 * 109.46909 * 12.77155 * 12 11 10 14 14 C 1.50709 * 109.46975 * 132.76940 * 12 11 10 15 15 H 1.07995 * 120.00023 * 3.86939 * 14 12 11 16 16 C 1.37874 * 119.99654 * 183.87367 * 14 12 11 17 17 N 1.31518 * 119.99480 * 197.93998 * 16 14 12 18 18 Si 1.86798 * 120.00174 * 17.93797 * 16 14 12 19 19 H 1.48500 * 109.46937 * 86.15702 * 18 16 14 20 20 H 1.48500 * 109.47047 * 206.15440 * 18 16 14 21 21 H 1.48501 * 109.47235 * 326.15519 * 18 16 14 22 22 C 1.53001 * 109.47071 * 252.76621 * 12 11 10 23 23 C 1.52998 * 109.46746 * 66.05579 * 22 12 11 24 24 H 1.09000 * 109.47293 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46952 * 300.00087 * 1 2 3 26 26 H 1.09002 * 109.47474 * 59.99630 * 1 2 3 27 27 H 1.08995 * 109.46684 * 239.99813 * 2 1 3 28 28 H 1.09000 * 109.47120 * 119.99485 * 2 1 3 29 29 H 1.08993 * 109.47114 * 60.00479 * 3 2 1 30 30 H 1.09000 * 109.46824 * 299.99666 * 3 2 1 31 31 H 1.09003 * 109.47485 * 270.25047 * 6 5 4 32 32 H 1.09000 * 109.47141 * 30.25550 * 6 5 4 33 33 H 1.08997 * 109.46548 * 150.25161 * 6 5 4 34 34 H 1.09007 * 109.46949 * 330.02145 * 10 9 8 35 35 H 1.08997 * 109.46679 * 210.02173 * 10 9 8 36 36 H 1.00902 * 111.00589 * 60.93231 * 11 10 9 37 37 H 0.97000 * 119.99406 * 179.97438 * 17 16 14 38 38 H 1.08997 * 109.47328 * 306.05730 * 22 12 11 39 39 H 1.09002 * 109.46672 * 186.05358 * 22 12 11 40 40 H 1.08998 * 109.47222 * 295.26245 * 23 22 12 41 41 H 1.09004 * 109.47171 * 175.26170 * 23 22 12 42 42 H 1.09006 * 109.47406 * 55.26771 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.3205 1.4394 1.0814 6 6 3.8887 1.4358 2.5252 7 7 5.5493 1.4456 0.6415 8 7 5.5487 1.4475 -0.6445 9 6 4.3195 1.4431 -1.0834 10 6 3.8865 1.4440 -2.5269 11 7 3.7512 0.0593 -2.9983 12 6 3.4426 0.0199 -4.4340 13 1 3.6064 1.0062 -4.8681 14 6 4.3393 -0.9831 -5.1132 15 1 5.0221 -1.5807 -4.5275 16 6 4.2880 -1.1376 -6.4823 17 7 4.7840 -2.2201 -7.0408 18 14 3.5138 0.1903 -7.5438 19 1 4.5317 1.2224 -7.8659 20 1 3.0070 -0.4145 -8.8018 21 1 2.3875 0.8185 -6.8076 22 6 1.9810 -0.3876 -4.6304 23 6 1.0675 0.7059 -4.0732 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8932 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.7807 2.4626 2.8748 32 1 2.9339 0.9181 2.6176 33 1 4.6393 0.9240 3.1275 34 1 4.6326 1.9618 -3.1297 35 1 2.9277 1.9542 -2.6182 36 1 3.0539 -0.4379 -2.4648 37 1 4.7476 -2.3290 -8.0040 38 1 1.7907 -1.3230 -4.1042 39 1 1.7809 -0.5215 -5.6935 40 1 1.2075 0.7818 -2.9950 41 1 0.0285 0.4558 -4.2880 42 1 1.3155 1.6593 -4.5399 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594006470.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:57 Heat of formation + Delta-G solvation = 44.285576 kcal Electronic energy + Delta-G solvation = -21206.133079 eV Core-core repulsion = 18221.361180 eV Total energy + Delta-G solvation = -2984.771900 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.12865 -38.67281 -37.19845 -34.85045 -33.81849 -33.66500 -32.29397 -29.86411 -28.54374 -27.56870 -26.21958 -24.09951 -23.15706 -22.26470 -21.69853 -21.35886 -18.88015 -17.90796 -17.38340 -16.76456 -16.72712 -16.18255 -15.78500 -15.20531 -14.96699 -14.77247 -14.51262 -14.38024 -13.78888 -13.62471 -13.56163 -13.40088 -13.21745 -13.14038 -13.09615 -12.63877 -12.51975 -12.41103 -12.33218 -12.27887 -11.81489 -11.65562 -11.43030 -11.33220 -11.21840 -11.02329 -10.52970 -10.05028 -9.06734 -8.25842 -6.21622 0.79512 1.35237 1.40664 1.47789 1.52794 1.85315 2.38023 3.06494 3.22341 3.48661 3.59605 3.64515 3.83158 3.88321 4.16295 4.22572 4.29698 4.33189 4.38873 4.47925 4.49848 4.58513 4.69023 4.74447 4.80673 4.87591 4.95418 5.02571 5.06516 5.12535 5.16487 5.19477 5.22091 5.27405 5.40989 5.51147 5.74782 5.94692 6.03662 6.59071 6.73407 6.83821 7.39976 7.79446 8.92305 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.022616 B = 0.005669 C = 0.004948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.758806 B = 4937.788886 C = 5656.924435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.095 3.905 4 N -0.464 5.464 5 C 0.177 3.823 6 C -0.062 4.062 7 N -0.350 5.350 8 N -0.333 5.333 9 C 0.185 3.815 10 C 0.151 3.849 11 N -0.680 5.680 12 C 0.204 3.796 13 H 0.027 0.973 14 C -0.512 4.512 15 H 0.022 0.978 16 C 0.014 3.986 17 N -0.946 5.946 18 Si 0.928 3.072 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.218 1.218 22 C -0.146 4.146 23 C -0.147 4.147 24 H 0.060 0.940 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.133 0.867 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.334 0.666 37 H 0.264 0.736 38 H 0.052 0.948 39 H 0.049 0.951 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.346 11.089 17.697 26.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C -0.026 4.026 4 N -0.155 5.155 5 C -0.091 4.091 6 C -0.121 4.121 7 N -0.191 5.191 8 N -0.173 5.173 9 C -0.084 4.084 10 C 0.020 3.980 11 N -0.313 5.313 12 C 0.095 3.905 13 H 0.045 0.955 14 C -0.550 4.550 15 H 0.041 0.959 16 C -0.183 4.183 17 N -0.586 5.586 18 Si 0.752 3.248 19 H -0.206 1.206 20 H -0.215 1.215 21 H -0.140 1.140 22 C -0.185 4.185 23 C -0.205 4.205 24 H 0.079 0.921 25 H 0.098 0.902 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.151 0.849 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.113 0.887 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.154 0.846 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.148 10.936 17.453 24.987 hybrid contribution -1.475 0.004 -1.161 1.877 sum -15.623 10.940 16.291 25.083 Atomic orbital electron populations 1.21667 0.92005 1.03014 1.03400 1.21926 0.98596 0.94664 1.02607 1.22468 0.73017 0.99841 1.07279 1.46383 1.09953 1.53968 1.05171 1.25686 0.86760 1.02357 0.94346 1.20453 1.03655 1.05591 0.82365 1.74139 1.19967 1.21696 1.03258 1.74166 1.19572 1.19775 1.03766 1.24792 0.87139 1.03740 0.92776 1.20295 1.00911 0.91950 0.84846 1.60286 1.54073 1.12138 1.04836 1.19359 0.91628 0.95127 0.84400 0.95475 1.21267 1.21367 1.20538 0.91840 0.95944 1.25802 0.96223 0.96983 0.99320 1.70162 1.49629 1.27483 1.11352 0.86177 0.80372 0.80024 0.78239 1.20562 1.21544 1.14026 1.22394 0.96233 0.98967 1.00924 1.21884 0.99600 0.98162 1.00805 0.92074 0.90224 0.91765 0.93404 0.91031 0.84866 0.87623 0.87562 0.87717 0.88692 0.89685 0.90752 0.84625 0.92753 0.92956 0.93211 0.91912 0.91225 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.91 71.98 0.71 -0.63 16 2 C -0.14 -2.00 6.26 30.60 0.19 -1.81 16 3 C 0.09 1.30 5.68 86.38 0.49 1.79 16 4 N -0.46 -11.32 2.75 -504.02 -1.38 -12.70 16 5 C 0.18 4.59 8.03 137.98 1.11 5.70 16 6 C -0.06 -0.81 10.06 71.24 0.72 -0.09 16 7 N -0.35 -12.98 12.21 -50.16 -0.61 -13.59 16 8 N -0.33 -13.87 12.21 -50.15 -0.61 -14.48 16 9 C 0.18 6.26 7.59 137.98 1.05 7.31 16 10 C 0.15 5.03 5.52 85.56 0.47 5.50 16 11 N -0.68 -27.09 6.04 -499.45 -3.02 -30.11 16 12 C 0.20 9.00 1.73 44.17 0.08 9.08 16 13 H 0.03 1.19 6.23 -2.39 -0.01 1.18 16 14 C -0.51 -29.75 9.26 25.60 0.24 -29.52 16 15 H 0.02 1.52 8.06 -2.91 -0.02 1.50 16 16 C 0.01 0.81 5.28 84.65 0.45 1.26 16 17 N -0.95 -60.18 13.96 21.45 0.30 -59.88 16 18 Si 0.93 42.70 25.85 68.60 1.77 44.47 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 20 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 21 H -0.22 -8.56 5.62 99.48 0.56 -8.00 16 22 C -0.15 -5.45 4.54 30.59 0.14 -5.31 16 23 C -0.15 -3.77 9.04 71.98 0.65 -3.12 16 24 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 26 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.05 0.99 6.47 -2.39 -0.02 0.97 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.13 0.86 7.82 -2.39 -0.02 0.84 16 30 H 0.11 1.27 7.19 -2.39 -0.02 1.25 16 31 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.10 0.75 7.87 -2.39 -0.02 0.73 16 33 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 3.13 8.02 -2.38 -0.02 3.11 16 35 H 0.07 1.89 5.77 -2.39 -0.01 1.88 16 36 H 0.33 11.96 6.11 -89.69 -0.55 11.41 16 37 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 38 H 0.05 1.99 8.04 -2.39 -0.02 1.97 16 39 H 0.05 2.01 5.02 -2.39 -0.01 2.00 16 40 H 0.06 1.32 6.70 -2.39 -0.02 1.30 16 41 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 42 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -81.28 332.51 3.05 -78.23 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.31 Total: 17.90 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: 6.29 Total: -9.84 kcal Atomic # 7 Polarization: -125.44 SS G_CDS: -5.33 Total: -130.76 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.77 Total: 44.47 kcal Total: -81.28 3.05 -78.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594006470.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.518 kcal (2) G-P(sol) polarization free energy of solvation -81.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds