Wall clock time and date at job start Mon Mar 30 2020 00:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47237 * 2 1 4 4 N 1.46501 * 109.47134 * 180.02562 * 3 2 1 5 5 C 1.35492 * 126.98245 * 270.15714 * 4 3 2 6 6 C 1.50700 * 126.34461 * 359.97438 * 5 4 3 7 7 N 1.30523 * 107.30593 * 180.22716 * 5 4 3 8 8 N 1.28593 * 109.67286 * 359.77144 * 7 5 4 9 9 C 1.30512 * 109.67562 * 0.02562 * 8 7 5 10 10 C 1.50704 * 126.34960 * 179.97438 * 9 8 7 11 11 N 1.46903 * 109.46626 * 90.02103 * 10 9 8 12 12 C 1.46902 * 110.99443 * 174.85839 * 11 10 9 13 13 H 1.09001 * 109.47296 * 325.89006 * 12 11 10 14 14 C 1.50706 * 109.46909 * 205.89522 * 12 11 10 15 15 H 1.07995 * 119.99971 * 0.02562 * 14 12 11 16 16 C 1.37880 * 119.99693 * 180.02562 * 14 12 11 17 17 N 1.31508 * 120.00177 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99770 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47300 * 59.99505 * 18 16 14 20 20 H 1.48497 * 109.47318 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47036 * 299.99779 * 18 16 14 22 22 C 1.52995 * 109.47246 * 85.89554 * 12 11 10 23 23 C 1.53004 * 109.47357 * 65.15792 * 22 12 11 24 24 H 1.09001 * 109.47444 * 299.99997 * 1 2 3 25 25 H 1.09001 * 109.47547 * 59.99620 * 1 2 3 26 26 H 1.09001 * 109.47670 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47088 * 240.00228 * 2 1 3 28 28 H 1.09001 * 109.47547 * 120.00379 * 2 1 3 29 29 H 1.09004 * 109.47371 * 60.00261 * 3 2 1 30 30 H 1.09004 * 109.47516 * 300.00244 * 3 2 1 31 31 H 1.08995 * 109.47507 * 270.24706 * 6 5 4 32 32 H 1.09004 * 109.46955 * 30.25096 * 6 5 4 33 33 H 1.09007 * 109.46878 * 150.24705 * 6 5 4 34 34 H 1.08994 * 109.46817 * 330.02909 * 10 9 8 35 35 H 1.08994 * 109.47309 * 210.02359 * 10 9 8 36 36 H 1.00898 * 111.00523 * 298.80907 * 11 10 9 37 37 H 0.97009 * 119.99949 * 180.02562 * 17 16 14 38 38 H 1.09006 * 109.47030 * 305.15697 * 22 12 11 39 39 H 1.08999 * 109.47198 * 185.15531 * 22 12 11 40 40 H 1.08997 * 109.46865 * 54.84483 * 23 22 12 41 41 H 1.08998 * 109.46754 * 294.85099 * 23 22 12 42 42 H 1.08996 * 109.47055 * 174.84949 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.3205 1.4393 1.0814 6 6 3.8888 1.4356 2.5252 7 7 5.5494 1.4455 0.6414 8 7 5.5487 1.4474 -0.6445 9 6 4.3196 1.4431 -1.0834 10 6 3.8865 1.4441 -2.5268 11 7 3.7512 0.0594 -2.9983 12 6 3.2131 0.0188 -4.3646 13 1 2.5087 0.8392 -4.5022 14 6 2.5058 -1.2932 -4.5872 15 1 2.4602 -2.0236 -3.7929 16 6 1.9169 -1.5611 -5.8048 17 7 1.9720 -0.6714 -6.7717 18 14 1.0408 -3.1876 -6.0809 19 1 -0.0719 -3.3221 -5.1068 20 1 0.4968 -3.2286 -7.4620 21 1 2.0008 -4.3050 -5.8931 22 6 4.3593 0.1569 -5.3685 23 6 5.2792 -1.0611 -5.2631 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.7808 2.4623 2.8748 32 1 2.9339 0.9180 2.6176 33 1 4.6393 0.9238 3.1276 34 1 4.6326 1.9618 -3.1296 35 1 2.9278 1.9544 -2.6182 36 1 4.6319 -0.4296 -2.9419 37 1 1.5574 -0.8598 -7.6283 38 1 4.9272 1.0612 -5.1494 39 1 3.9528 0.2189 -6.3779 40 1 4.6933 -1.9711 -5.3918 41 1 5.7568 -1.0720 -4.2834 42 1 6.0429 -1.0079 -6.0390 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594006473.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:00 Heat of formation + Delta-G solvation = 59.066786 kcal Electronic energy + Delta-G solvation = -21060.106692 eV Core-core repulsion = 18075.975754 eV Total energy + Delta-G solvation = -2984.130938 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.87071 -36.72064 -36.08622 -33.32330 -32.58289 -31.83396 -30.51015 -28.05205 -26.61445 -26.40262 -24.51720 -23.22220 -22.08871 -20.90554 -20.24094 -19.34921 -16.94342 -16.15972 -16.02243 -15.29525 -14.85220 -14.66575 -14.35391 -13.78157 -13.61971 -13.14733 -13.07890 -12.87669 -12.65749 -12.44377 -12.35486 -12.22900 -11.93419 -11.66268 -11.46291 -11.13336 -10.94272 -10.80646 -10.76174 -10.53754 -10.08877 -10.05268 -9.89906 -9.82413 -9.58124 -9.08563 -8.73353 -8.39440 -7.38357 -6.02818 -4.04714 2.02313 2.67919 3.13023 3.30044 3.35231 3.38044 4.38876 4.44185 4.55697 4.66769 4.83833 4.96087 5.10162 5.28453 5.28989 5.32987 5.34806 5.43462 5.52838 5.62897 5.67645 5.92548 5.94960 6.05551 6.15742 6.29627 6.36884 6.38856 6.39773 6.46163 6.55892 6.91910 7.09934 7.16862 7.24005 7.50603 7.65700 7.81166 8.18906 8.40366 8.50856 8.99754 9.03762 9.58887 11.04001 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.020173 B = 0.005760 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.681805 B = 4860.359221 C = 5807.862520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.142 4.142 3 C 0.110 3.890 4 N -0.460 5.460 5 C 0.158 3.842 6 C -0.062 4.062 7 N -0.301 5.301 8 N -0.302 5.302 9 C 0.201 3.799 10 C 0.141 3.859 11 N -0.678 5.678 12 C 0.219 3.781 13 H 0.034 0.966 14 C -0.489 4.489 15 H 0.060 0.940 16 C 0.060 3.940 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.278 1.278 22 C -0.147 4.147 23 C -0.131 4.131 24 H 0.049 0.951 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.098 0.902 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.336 0.664 37 H 0.260 0.740 38 H 0.013 0.987 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.029 0.971 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.607 4.589 13.540 14.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.181 4.181 3 C -0.013 4.013 4 N -0.151 5.151 5 C -0.110 4.110 6 C -0.121 4.121 7 N -0.142 5.142 8 N -0.142 5.142 9 C -0.067 4.067 10 C 0.009 3.991 11 N -0.311 5.311 12 C 0.111 3.889 13 H 0.051 0.949 14 C -0.528 4.528 15 H 0.079 0.921 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.721 3.279 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.204 1.204 22 C -0.186 4.186 23 C -0.188 4.188 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.116 0.884 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.115 0.885 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.155 0.845 37 H 0.070 0.930 38 H 0.032 0.968 39 H 0.112 0.888 40 H 0.087 0.913 41 H 0.048 0.952 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -1.796 4.543 13.642 14.490 hybrid contribution -1.110 -0.568 -0.803 1.483 sum -2.906 3.974 12.839 13.751 Atomic orbital electron populations 1.21647 0.94419 1.02549 1.01693 1.21924 0.96687 0.94883 1.04568 1.21982 0.75230 0.99786 1.04309 1.46103 1.08813 1.53931 1.06225 1.24668 0.87740 1.06154 0.92393 1.20134 1.02303 1.03425 0.86277 1.74167 1.17250 1.19142 1.03601 1.74216 1.17482 1.19644 1.02844 1.25013 0.86784 1.02338 0.92540 1.20240 1.00335 0.94611 0.83931 1.60873 1.32509 1.09377 1.28327 1.19239 0.91659 0.97877 0.80101 0.94857 1.20950 1.32962 1.01228 0.97628 0.92136 1.24884 0.96452 0.96771 0.96041 1.69865 1.45023 1.34439 1.04046 0.86641 0.79977 0.84255 0.76987 1.20417 1.21493 1.20368 1.22116 0.97017 0.94111 1.05368 1.21598 0.98120 1.01196 0.97924 0.93159 0.91946 0.91937 0.88368 0.92035 0.89408 0.88451 0.90171 0.90675 0.89050 0.92582 0.90036 0.84529 0.92995 0.96849 0.88802 0.91289 0.95233 0.95667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 37.16 0.37 -1.10 16 2 C -0.14 -1.70 6.26 -26.74 -0.17 -1.86 16 3 C 0.11 1.23 5.68 -4.04 -0.02 1.21 16 4 N -0.46 -6.73 2.75 -110.66 -0.30 -7.03 16 5 C 0.16 2.31 8.03 -154.99 -1.24 1.06 16 6 C -0.06 -0.57 10.06 36.01 0.36 -0.21 16 7 N -0.30 -5.52 12.21 32.80 0.40 -5.12 16 8 N -0.30 -5.93 12.21 32.80 0.40 -5.53 16 9 C 0.20 3.53 7.59 -154.99 -1.18 2.35 16 10 C 0.14 2.49 5.86 -4.97 -0.03 2.46 16 11 N -0.68 -13.64 6.19 -109.22 -0.68 -14.32 16 12 C 0.22 5.06 2.33 -68.86 -0.16 4.89 16 13 H 0.03 0.84 7.70 -51.93 -0.40 0.44 16 14 C -0.49 -12.48 7.25 -34.44 -0.25 -12.73 16 15 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 16 C 0.06 1.55 5.28 -17.82 -0.09 1.46 16 17 N -0.89 -24.22 11.38 55.43 0.63 -23.59 16 18 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 C -0.15 -3.33 5.51 -26.73 -0.15 -3.48 16 23 C -0.13 -2.80 9.40 37.16 0.35 -2.45 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.10 1.55 8.14 -51.92 -0.42 1.12 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 0.73 7.82 -51.93 -0.41 0.32 16 30 H 0.10 1.09 7.19 -51.93 -0.37 0.72 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.56 7.87 -51.93 -0.41 0.15 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 1.01 7.53 -51.93 -0.39 0.62 16 35 H 0.08 1.34 6.99 -51.93 -0.36 0.98 16 36 H 0.34 7.01 6.69 -39.29 -0.26 6.75 16 37 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 38 H 0.01 0.28 7.50 -51.93 -0.39 -0.11 16 39 H 0.09 2.39 6.22 -51.93 -0.32 2.07 16 40 H 0.07 1.61 6.85 -51.93 -0.36 1.25 16 41 H 0.03 0.58 6.63 -51.93 -0.34 0.24 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 339.04 15.07 5.11 5.11 Total: -1.00 -29.43 339.04 -8.62 -38.04 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -6.95 Total: 5.24 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -2.21 Total: -8.41 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 0.45 Total: -55.59 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.43 -8.62 -38.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594006473.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.110 kcal (2) G-P(sol) polarization free energy of solvation -29.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds