Wall clock time and date at job start Mon Mar 30 2020 00:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47237 * 2 1 4 4 N 1.46501 * 109.47134 * 180.02562 * 3 2 1 5 5 C 1.35492 * 126.98245 * 270.15714 * 4 3 2 6 6 C 1.50700 * 126.34461 * 359.97438 * 5 4 3 7 7 N 1.30523 * 107.30593 * 180.22716 * 5 4 3 8 8 N 1.28593 * 109.67286 * 359.77144 * 7 5 4 9 9 C 1.30512 * 109.67562 * 0.02562 * 8 7 5 10 10 C 1.50704 * 126.34960 * 179.97438 * 9 8 7 11 11 N 1.46903 * 109.46626 * 90.02103 * 10 9 8 12 12 C 1.46902 * 110.99443 * 174.85839 * 11 10 9 13 13 H 1.09001 * 109.47296 * 325.89006 * 12 11 10 14 14 C 1.50706 * 109.46909 * 205.89522 * 12 11 10 15 15 H 1.07995 * 119.99971 * 0.02562 * 14 12 11 16 16 C 1.37880 * 119.99693 * 180.02562 * 14 12 11 17 17 N 1.31508 * 120.00177 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99770 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47300 * 59.99505 * 18 16 14 20 20 H 1.48497 * 109.47318 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47036 * 299.99779 * 18 16 14 22 22 C 1.52995 * 109.47246 * 85.89554 * 12 11 10 23 23 C 1.53004 * 109.47357 * 65.15792 * 22 12 11 24 24 H 1.09001 * 109.47444 * 299.99997 * 1 2 3 25 25 H 1.09001 * 109.47547 * 59.99620 * 1 2 3 26 26 H 1.09001 * 109.47670 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47088 * 240.00228 * 2 1 3 28 28 H 1.09001 * 109.47547 * 120.00379 * 2 1 3 29 29 H 1.09004 * 109.47371 * 60.00261 * 3 2 1 30 30 H 1.09004 * 109.47516 * 300.00244 * 3 2 1 31 31 H 1.08995 * 109.47507 * 270.24706 * 6 5 4 32 32 H 1.09004 * 109.46955 * 30.25096 * 6 5 4 33 33 H 1.09007 * 109.46878 * 150.24705 * 6 5 4 34 34 H 1.08994 * 109.46817 * 330.02909 * 10 9 8 35 35 H 1.08994 * 109.47309 * 210.02359 * 10 9 8 36 36 H 1.00898 * 111.00523 * 298.80907 * 11 10 9 37 37 H 0.97009 * 119.99949 * 180.02562 * 17 16 14 38 38 H 1.09006 * 109.47030 * 305.15697 * 22 12 11 39 39 H 1.08999 * 109.47198 * 185.15531 * 22 12 11 40 40 H 1.08997 * 109.46865 * 54.84483 * 23 22 12 41 41 H 1.08998 * 109.46754 * 294.85099 * 23 22 12 42 42 H 1.08996 * 109.47055 * 174.84949 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.3205 1.4393 1.0814 6 6 3.8888 1.4356 2.5252 7 7 5.5494 1.4455 0.6414 8 7 5.5487 1.4474 -0.6445 9 6 4.3196 1.4431 -1.0834 10 6 3.8865 1.4441 -2.5268 11 7 3.7512 0.0594 -2.9983 12 6 3.2131 0.0188 -4.3646 13 1 2.5087 0.8392 -4.5022 14 6 2.5058 -1.2932 -4.5872 15 1 2.4602 -2.0236 -3.7929 16 6 1.9169 -1.5611 -5.8048 17 7 1.9720 -0.6714 -6.7717 18 14 1.0408 -3.1876 -6.0809 19 1 -0.0719 -3.3221 -5.1068 20 1 0.4968 -3.2286 -7.4620 21 1 2.0008 -4.3050 -5.8931 22 6 4.3593 0.1569 -5.3685 23 6 5.2792 -1.0611 -5.2631 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.7808 2.4623 2.8748 32 1 2.9339 0.9180 2.6176 33 1 4.6393 0.9238 3.1276 34 1 4.6326 1.9618 -3.1296 35 1 2.9278 1.9544 -2.6182 36 1 4.6319 -0.4296 -2.9419 37 1 1.5574 -0.8598 -7.6283 38 1 4.9272 1.0612 -5.1494 39 1 3.9528 0.2189 -6.3779 40 1 4.6933 -1.9711 -5.3918 41 1 5.7568 -1.0720 -4.2834 42 1 6.0429 -1.0079 -6.0390 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594006473.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:00 Heat of formation + Delta-G solvation = 42.123164 kcal Electronic energy + Delta-G solvation = -21060.841423 eV Core-core repulsion = 18075.975754 eV Total energy + Delta-G solvation = -2984.865669 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.10553 -38.44485 -37.16922 -34.95140 -33.63014 -33.37695 -32.04817 -29.39781 -28.05904 -27.54870 -26.13197 -25.03355 -23.06258 -22.12923 -21.43088 -21.15240 -18.40417 -17.73412 -17.28681 -16.77088 -16.45510 -15.98917 -15.73917 -15.20032 -14.72096 -14.53922 -14.48120 -14.21251 -13.87719 -13.65167 -13.52524 -13.47811 -13.08550 -12.99060 -12.79941 -12.64617 -12.44862 -12.42541 -12.31634 -11.92452 -11.77958 -11.66096 -11.44269 -11.25268 -11.02308 -10.97635 -10.40924 -10.02949 -9.06919 -8.03839 -6.11188 0.82235 1.45145 1.46627 1.53085 1.58588 1.83218 2.47121 3.25618 3.26836 3.53608 3.68816 3.76316 3.92137 3.99634 4.19997 4.28742 4.41053 4.51651 4.55419 4.58740 4.62513 4.70315 4.73692 4.81155 4.90534 4.98187 5.03222 5.11969 5.15870 5.25196 5.32336 5.36872 5.41452 5.43866 5.68261 5.74501 5.80953 6.01242 6.29419 6.60255 6.66792 6.97522 7.55626 7.76268 9.01341 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.020173 B = 0.005760 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.681805 B = 4860.359221 C = 5807.862520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.136 4.136 3 C 0.105 3.895 4 N -0.457 5.457 5 C 0.175 3.825 6 C -0.062 4.062 7 N -0.345 5.345 8 N -0.337 5.337 9 C 0.188 3.812 10 C 0.149 3.851 11 N -0.673 5.673 12 C 0.227 3.773 13 H 0.011 0.989 14 C -0.495 4.495 15 H 0.050 0.950 16 C 0.020 3.980 17 N -0.917 5.917 18 Si 0.946 3.054 19 H -0.274 1.274 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.141 4.141 23 C -0.122 4.122 24 H 0.081 0.919 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.131 0.869 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.092 0.908 36 H 0.332 0.668 37 H 0.259 0.741 38 H 0.025 0.975 39 H 0.067 0.933 40 H 0.047 0.953 41 H 0.041 0.959 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.671 4.731 15.678 16.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.174 4.174 3 C -0.016 4.016 4 N -0.147 5.147 5 C -0.094 4.094 6 C -0.121 4.121 7 N -0.185 5.185 8 N -0.177 5.177 9 C -0.081 4.081 10 C 0.017 3.983 11 N -0.305 5.305 12 C 0.119 3.881 13 H 0.029 0.971 14 C -0.533 4.533 15 H 0.068 0.932 16 C -0.179 4.179 17 N -0.558 5.558 18 Si 0.773 3.227 19 H -0.199 1.199 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.181 4.181 23 C -0.179 4.179 24 H 0.100 0.900 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.149 0.851 30 H 0.113 0.887 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.069 0.931 35 H 0.110 0.890 36 H 0.150 0.850 37 H 0.068 0.932 38 H 0.044 0.956 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.869 4.686 15.796 16.724 hybrid contribution -0.792 -0.582 -1.376 1.691 sum -3.661 4.104 14.420 15.433 Atomic orbital electron populations 1.21615 0.92874 1.02569 1.02754 1.21814 0.97920 0.94926 1.02742 1.22286 0.73217 0.99713 1.06361 1.46292 1.09947 1.53088 1.05392 1.25653 0.86739 1.02674 0.94290 1.20447 1.03636 1.05539 0.82498 1.74086 1.19591 1.21721 1.03149 1.74106 1.18882 1.20724 1.03973 1.24750 0.87036 1.03430 0.92883 1.20128 1.00718 0.92980 0.84431 1.60744 1.32175 1.11122 1.26490 1.18978 0.91370 0.95993 0.81737 0.97065 1.21120 1.33069 1.01843 0.97315 0.93164 1.25486 0.97164 0.99342 0.95921 1.69983 1.45759 1.35792 1.04233 0.85794 0.79045 0.81027 0.76811 1.19900 1.21390 1.20265 1.21996 0.97162 0.95352 1.03573 1.21483 0.97908 0.99351 0.99207 0.90007 0.92931 0.92492 0.92858 0.91185 0.85141 0.88650 0.87645 0.88058 0.88383 0.93101 0.89022 0.85019 0.93189 0.95609 0.91487 0.93430 0.94036 0.94053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.91 71.98 0.71 -1.80 16 2 C -0.14 -2.99 6.26 30.59 0.19 -2.80 16 3 C 0.11 2.10 5.68 86.38 0.49 2.59 16 4 N -0.46 -12.61 2.75 -504.01 -1.38 -14.00 16 5 C 0.17 4.74 8.03 137.98 1.11 5.85 16 6 C -0.06 -0.90 10.06 71.24 0.72 -0.19 16 7 N -0.35 -12.46 12.21 -50.15 -0.61 -13.08 16 8 N -0.34 -13.31 12.21 -50.15 -0.61 -13.92 16 9 C 0.19 6.56 7.59 137.98 1.05 7.61 16 10 C 0.15 5.31 5.86 85.56 0.50 5.82 16 11 N -0.67 -27.51 6.19 -499.46 -3.09 -30.60 16 12 C 0.23 10.72 2.33 44.17 0.10 10.82 16 13 H 0.01 0.59 7.70 -2.39 -0.02 0.57 16 14 C -0.49 -25.64 7.25 25.60 0.19 -25.45 16 15 H 0.05 2.67 7.81 -2.91 -0.02 2.64 16 16 C 0.02 1.03 5.28 84.66 0.45 1.47 16 17 N -0.92 -50.38 11.38 21.45 0.24 -50.14 16 18 Si 0.95 42.45 29.54 68.60 2.03 44.47 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 C -0.14 -6.49 5.51 30.59 0.17 -6.32 16 23 C -0.12 -5.21 9.40 71.98 0.68 -4.54 16 24 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 26 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 28 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.13 1.53 7.82 -2.38 -0.02 1.51 16 30 H 0.10 1.97 7.19 -2.38 -0.02 1.95 16 31 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.10 0.98 7.87 -2.38 -0.02 0.96 16 33 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.05 1.86 7.53 -2.39 -0.02 1.84 16 35 H 0.09 3.03 6.99 -2.39 -0.02 3.01 16 36 H 0.33 14.02 6.69 -89.70 -0.60 13.42 16 37 H 0.26 13.76 8.31 -92.70 -0.77 12.99 16 38 H 0.03 1.09 7.50 -2.38 -0.02 1.07 16 39 H 0.07 3.47 6.22 -2.39 -0.01 3.46 16 40 H 0.05 2.22 6.85 -2.39 -0.02 2.20 16 41 H 0.04 1.64 6.63 -2.39 -0.02 1.63 16 42 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -65.20 339.04 3.32 -61.89 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: 0.40 Total: 22.33 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: 6.35 Total: -6.95 kcal Atomic # 7 Polarization: -116.28 SS G_CDS: -5.46 Total: -121.74 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -65.20 3.32 -61.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594006473.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.008 kcal (2) G-P(sol) polarization free energy of solvation -65.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds